ccdc127a (cc127)


Basic Information

Item Value
gene id ccdc127a
gene name cc127
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5306276 ~ 5310035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595380.2
GTACAAAACAAGTGGTCTCTTTGTAATTGTCTTGCGTAAAAGCGTATAATCGCTCTTTCCCATCGGTACAGGGACAAATGTATAGCTACTTGACCTAGACACATTTTGTCAAGGGCACCTCCATGAACAACTTGAATGACCCCCCTAGATGGAACATGGGGCCAGACCCACAAGAAGGTGCTGCTGCTGACGGGAACAAATGGAATTATGCCCTCCTCGTGCCAATGCTGGGGCTGGCTGCCTTTCGCTGGATCTGGACCAGAGAGTCTCAGACAGAGATCATAAAGGTCAAGGCCCGGTACGACCAGGACATGTCTGCCGTGACCTCCAACCTTGAGATGAAGTACAGAGACACCCTGACGGAGAACCGGCGGGCAGCGGCCATCTTAGAGCTggagctggagaaggagaggcagagggtCCAGGGGTACCGCCAGGCCCTCATCTCACAGAGCCAGCAGGTCATGGAGGAACGCAAACAGCTACAGGTGGAACGAGAGGCTCTGGAGCAAGAGAAGATTAAGCTTTTAGAATCCGGCGCCGCTGGGGCCGTCCTCCAACACGCTCTGGCCAGAGAGAGCGACTGGCACCAGAGGGCCTCAGCCATGCTGAAGGATCTGGAGGAGGACCTTGTGGAGAGACAGGGGGCCTACTGCAACCTGCTCCTCCCCAGGGAACATAGGCTGGAGATGGAGAAGAACCTGCTCCTCAAGGTGGTGAAGGAACCGTTGGGAACGGATACAGatctggagggagacctgaagGATATCTTTAAGAACGACCGCTACTGTGCCAAAGGCAACAATCGCCTCCTCAACGTGAAGAAAATGGACAAGAGGAAGAATGGTAGCTTGATGTGGCTCTACCTCAGATATTGGCAGCTTCAGGTTACCATGGAGACGCATAAACGGGCAGAGGACTCAATACTGGGAGTTACACCAGATAAGAACGACCTCAAGTGACCTTGATAGAGTTGACCTTGATAGGGTTGACCTTGATAGGGTTGACCTTGAGTATATAGTAACAGTCTTCTTGACtgcacaaatgttttattttttcacTAAATGGTGAATTAGTTTGTATATTTCATTTCCTCTACATCGTTTTATGACTCCTGACAAATGTAAACGCTTACTTTGTTACTAGTGAAACACAGTAAATGCCAATGGAATTGTCATTGAATGTCAGGGATATTTTCACAACTATAGTTTTGTCTTCGCACTCCAAACCCAATGTTGGATGATATGATACAGTATCATGAATTCTAGAGGAATATTTCCTTTTGATAAAATCATGTATATCCACATTGGACATCACAGCTGTTTGGTCAGTCATGTAGAAAAGAATAGTGatatacttttattttgacaGAATATACAAAGTTATAACAGACTGTGGTTGTGTCATACGATCGTGTAATGACATGTAATAACATACTGACATCTCTGACTAGATACTTTGTGTGGGTTATTTAATTAGAGGTATTGGTTGAGTAAAGCCCAGGACTGACAAGCATTGCTGACCATAGCTTCCACAGGCTCCATAAAGTTTGAACTAATGTAAACTGAATCAAAGAAATAGACCTGagcaaacatttacattttattcaTGTAGCGGACACTCTCGTCCAGAGATGAAGTTTtgtag

Function

NR:

description
coiled-coil domain-containing protein 127-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595380.2 True 1647 mRNA 0.46 4 5306276 5310035

Neighbor

gene id symbol gene type direction distance location
LOC118937366 NA coding upstream 20535 5283628 ~ 5285741 (+)
mrpl32 LOC106595598 coding upstream 30692 5274156 ~ 5275584 (+)
LOC110520809 LOC106598492 coding upstream 70382 5228057 ~ 5235894 (+)
tbc1d31 tbc1d31 coding upstream 79235 5195931 ~ 5227041 (+)
LOC110506140 LOC106606110 coding upstream 129289 5148101 ~ 5176987 (+)
phf20l1 LOC100196869 coding downstream 11519 5321554 ~ 5349672 (+)
tg LOC106573164 coding downstream 38217 5348252 ~ 5447200 (+)
ccn4b wisp1 coding downstream 141464 5451499 ~ 5457130 (+)
ptp4a3b LOC106596188 coding downstream 170940 5480975 ~ 5542867 (+)
dync1i1 LOC105016552 coding downstream 232959 5542994 ~ 5572618 (+)
G108333 LOC100380869 non-coding upstream 52244 5249713 ~ 5254032 (+)
G108336 NA non-coding upstream 64593 5240611 ~ 5241683 (+)
G108334 NA non-coding upstream 65926 5238227 ~ 5240350 (+)
G108332 NA non-coding upstream 80146 5225206 ~ 5226130 (+)
G108361 NA non-coding downstream 23718 5333753 ~ 5334485 (+)
G108529 NA non-coding downstream 55796 5365831 ~ 5366530 (+)
G108547 NA non-coding downstream 70043 5380078 ~ 5380438 (+)
G108549 NA non-coding downstream 81387 5391422 ~ 5391666 (+)
G108354 LOC106573122 other upstream 6343 5296179 ~ 5299933 (+)
G108280 NA other upstream 169284 5136356 ~ 5136992 (+)
G108048 NA other upstream 448002 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 494701 4808739 ~ 4811575 (+)
G107922 NA other upstream 560690 4744168 ~ 4745586 (+)
LOC110506279 LOC106595015 other downstream 271258 5575366 ~ 5592253 (+)
G108682 NA other downstream 409930 5719965 ~ 5725579 (+)
G108702 NA other downstream 470179 5780214 ~ 5782921 (+)
G108733 NA other downstream 590476 5900511 ~ 5900950 (+)

Expression


Co-expression Network