tg (LOC106573164)


Basic Information

Item Value
gene id tg
gene name LOC106573164
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5348252 ~ 5447200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961549.1
ATGGGACTTGTGGATGAAAAGTACCAGTGTAACACAGTGAAGATGATGAGCCTGGTTCAGATCTCCTCCATACTGCTGtgttacctctgtctgtctgaggggaaGATTTCAGAATATCAACTGGAGTCTGAGACCCTGAGTCAGTGTGAGTCTCTACGTGGTGGTAGTTCTGCCCGGCAACAAGACCATGTCCCCCAGTGCTCAGAGGACGGGCGATTCAGACACGTCCAGTGCAGCCGTGCTGGTGGTGAGTGCTGGTGTGTGAACGCAGAGGGAGCTGAGATCTCTGGATCCAGACAGAACGGATCAGCTGTGTACTgTCTGACGTCCTGCCAGCTCCACAGACAGCAGGCCCTGCTGAGTGGCGATGCCCCCCTGGTGCCCCAGTGCCAGGCCTCTGGGGAGTACCAGGCGGTGCAGTGTGACAGCGCCCGGGGACAGTGCTGGTGTGTAGACCTGGAAGGCATGGAGCTCTACGGGACCCGGCAGAACGGAAAGCCCTCTCAGTGCCCAGGCAGCTGTGAGGTGAGGTCGAGGCGTCTCCTCCACGGCGTCGGGGAGCGCTCCCCCCCTCAGTGCTCGGCCGACGGCTCCTTCCTGTCCGTGCAGTGCAAGTTTGTCAACACCACTGACAGGATGGTCTTGGACCTGCTGCACACGTTCAACAGGTTCCCTAAAGTATTCCAGACGTTCAGCAGCTTCAGACAGATGTTCCCAGAGGTGTCCAGTTACTGTTTCTGTGCTGACAGCAGAGGCAGGGAGCTCCCCAGCACAGGTGTGGAGCTGCTGCTAGATGAGGTGTACGACACAGCCTTCTCAGGTCTGGAACCAGGCCGCTCCTTCTCCCAGACCAACATGTACCGTATCCTACAGAGGAGGTTCCTGGCCGTCCAGCTGGCGATGAGTGGCAGGTTCAGATGCCCCAGCCCTTGTGAGAGCGAGCGATCCGCTGGTGCCCAAGCTGGCAATGTGTTTGTGGCGTCCTGTGCTTCCGACGGGGGTTACGTGCCAACCCAGTGCCAGGCGGGTGGACAGTGCTGGTGTGTCGACCCCACAGGGAAGGAGATCTTTGGGACACGACAACATGGAGGACACCCTGACTGTGGTGCTGGAGTGAAGGACTGCACCTCTGAGCGTCGCCAGGCCCTCTCCAGGCTCTTCTCCAGCCCCTCAGATCAGGTGCCATCAGCCAAGGACTCACAGACACACCCAGTCCCAAGCCCCCTGTCTCCATGCAGCCCCCAACTCCAACAGCTCCTGTTGGGGACTCTTGGAGAGTCTCTTTCCGAGCGATCCGATTTAGGAGACATCCTGGCTGAGACGATCCAGGGGATGTTCCCTAGCGGGGCCATGGCCCTCAAGGCCCTATCTCTAGCCTCCAACCCCAAGAGACTCCAGGAGAACCTGTTCGGAGGAAAGTTCTTAGGAAACGCTGGGATGTTTAACTTCACTGGGGCCGTCGGTGTCAGCGGCACGTTGAGTTTCAGTCAAGCCAGTCTGGCAAACAACCAAGATCTGGTTCAACTCATCAGCGCCACCCTGGAAAACGGAGACTTCCTCTCCACCCTACGCCAAACCATCCTCTTATCCAAAGCCGAGGACAGCACCCAGCTAGGtgagctgttcagggtcctgtttgaGAGCGCCCAGTCCGGTGGTGCTGGATGTGAGAGGGAGCCTTCTGCCCTGTACGTGCCCAGCTGTGATGACAGCGGCCAGTATCAGGAGATCCAGTGCCAAGGCTCGGAGTGTTGGTGTGCTGACCCCCAGGGTCAGGAGGTCACGGGGTCACGTTTCAATGGTCAAAGGCCAAGGTGTCCGTCACGATGCGAGAGGGAGCGAGCGGCTGCTCAGAAGGTGAAGTCAGGCCAGGCTGCTGGGGTAGAGGTGTTCATGCCGAAGTGTGCGGAGGACGGGAGCTACGTGGCGTTGCAGTGTCTGGGAAAGAGTTGCTTCTGTCTGGACCTCCTGGGAGAGAGACACGCCACTGTCCCCGTAGGACAGACTGTTCAGTgtcctccccctccctctccccttccctccccagGGTCAGCTCCAGGCTCCTGTTCCCTGGCGGTGGCTGAGGTGGACCAATTCCAGGAGGAGGCTGAGCGTCTGGTCCTCCTCTCCAACAGCTCCCACATCCCTCTGGGCTACAGCTACCTGCTGGCTGAAGGTCTCCGTCTGACCTCTGACGAGCTACTCCacgccctctcctcctcctccgaccAGACCACGCTGCTCTCTGATAGGCTGCTGAGCCACTCACACTCTACTCTACGACTTGCTGCCCACTCCACTCTGCGGTTCTATTGGCAGAGCCAGCAGGCAGCATCTGTGGAGGAGAGACAGTCTCTACTGCTGGGCTACCAGCCCTACAGGCCCCAGTGTGATGCCCACAGACAGTGGCTGCCCACCCAGTGCCACCCCAGCACAGGTCAGTGTTGGTGTGTGGATGAGGAAGGAGGATACATCCCAGCTTCCCTGACCAGTCGCTCCCTCCAGAGACCACAGTGCCAGACCCGGTGTCAGAGAGGTTATGCTCAGGCTCTGCTCTCTGATTGGACACAGTCCTCCTACGACCCAACTTGTGAAGTGaGTGGCCAGTTCTCTGTGCTCCAGAAGGGGTCTTCAGGTGGAGGTGTAGCCTGGTGTGTCAGTCCTGTTTCTGGGGAAACCATCCAGCCTGCTACCCTGAGTCCCAGTGGAGACCTCACATGTCCTAGCTGGTGTCAGTTGTTGACAGACAGAGGTCAGTCTGTGGTGGGTTATGAGCCGGAGTGTCAGGTGGATGGAAGGCTGTTCTCCCCGCTGCAGTGTGACCAGACAGACTGCTGGTGTGTGTCTCAGACAGATGGACAGGAGCTGCCTGGAACCAGGACGCCACGCGCCACCGGGAAGACCCCAGCCTGTGACAgtccCCAGTGTCCCTCACCGTTCTCTGACATCACCGTTACCTACGGTGATGTGGTCTGTCGCTCTGACGTGATTGGTGGCCAGCAGAACTGTGACCTCATCTGTCACCTGGGTTACGAAAGCACACTTCCTGTAAACATGCAGTTACTGTGTGACGTGGAGACCAGAGCCTGGGTGACAGAGGCCCCACTTCCTCAAGCCTGCCAGAgACTTCAGGTGCTGCAGACCGTCCAGACCTCTGTGGTGCTCCAGCTCACCCTGCCTCCAGGCCAGGGACCCTGCagctcctccctccactccagcCTGCAGACCTCTCTACTCCACGACATGAGGGCCCAGGGTCTCTGCAGCCtgcagCTgacgtctgtctctgtgtccgtGTGTGATGAGTCGTCCGTCTCTgtagagtgtgtgagtgaggaaAGCGTCAGTGTTCAGGTCAGCTGGAGGGCTCTTCTCTCAGACCTTCCTATCTCTGTTCTGCCTGATCTGCATGACGTCGATGTAGCGCTCAGTGAGGACAGGCTGTTGGATGGGGTGCTAGGCCTGATGGGTAGTGACCCCTACCGCTCCATCTTGACCTCTGAACCCAGAGTCCTCTCTACCTCAGCACCCAACTTTGGCTGTTCCCATGGCTACCAGCGTGTTGGAACAGGATGTGTGGTGTGTCCTGCGGGTATGTTTTCCAGTGGAGGTGTGTGTTCTCCCTGTCCTCAGGGCTCCTACCAAGACCAGGAGGGGTCAGACTTCTGTACCATGTGTCCTAAAGGCACGTCCACTAACGGAGCTTCCACTGCCACACACTGTTTGACAGAGTGCCAGCGCAGTGGCCTGAGGTGTTCAGAGGGAGGGGACGTCCTGTCGGCCCAGCAGGACATCCAGACCAGGAGGTGGCGCTGTGTCACATCCAGCGGAGAACAGCTGGAGTGGACAACCACTGGCCAGCCTCTGTCTGAGGGAGAATGTTCAGTTCTGGAGAGATTTGAGACAGTTCCCAGATCAGCGTTTTCTCTAGCAGCAGAAGACTATGTCGTCCTCAGCTCAGAGGCGTCAGACACGACCACGGAGAAACAACTCAGGACGTGTGTCTCAGCTTGTGCCCAGGTCCAGACTTGTCTTTACGTCGTCCTTTACGCTGAAGAAGGACAAAGTCACTGTGAACTCTACAGCACCGACGCTGCTAACATCCGATGCCAAACCTCTGAGCTAACCAAAGGGTTCCTGGGAAATGCCGGTGCTGATATGTTCCAGAACCTGAGCTGTTCTCTGAAGGTGAACGGGGCTGACAGACAGAACGTCACGGTCATCAGGAAGAAAGgTCATGAATTCACCACTAAGGCCCAGAAGACCTTTGAAAGGTTGAGTTTCCGTAAGGCCAGTTCCGGTGTGTATCGTACCATGGTGTTTGCAGCTGAAGGAACCACTCTGACCGACGTCCATCGTTTCTGTCAGGACGAGTGTACCCAGAACACCTGCTGTGACGGCTTCATCCTCAACCAGAACGTTCTCAGCGGAGgTACCATTATGTGTGGTCTGCTGAGCTACCCAGACATGTTGCTATGCAGTGAGGCAGACTGGGACGTGTCTGGCCTGGCCAAGGCGAACAGGATCTGTGGGGCTGGAGTCACCTACAATAAACTGCAGAAACAGTTCATCTTTAACTTTGGAGGACAAGACTTCACCATCACTGATACAGCTCTGCCAACATCAAGCAAGAACAAAACTGACTACCAGGCCACCATTATTGGGTTCCAAGGCATTTACCTCTGGAAAGAGTCTGATATGACCACTCGTCCCAAGACCTCCCCAGCCTGTAGCAGTGTCCTCCCACAACAAGCCCCCCGAGTCGTTCTGTCGGATGCAGTGAAGGAGACGTTTGTGGCCCTGGACAGTAGTGCTGTTGTTGTGGACTCTGAACGGGACATCCCCAGCCTGCAATACTGGATCTTTAAACATCAGTTCTCTGCACAGGAGGCTCAGCTGTGGTGTCTGAAACactgtgaggaggaggagctgtGCCACTTGGCTGATGTGAGAGATGAGAGCTCAGTGTACTTTACCTGCGCCCTGTACCCAGACACCCAGGTGTGTGGGGCCTACGACAAACCCCTGAGACAGGCCTGCAGCCCTGTGCTCCCCCAGCAACCCCACACCGCTCACACCAAGAAGGTTGATCTGACTGGAAGTGTGGAGAGTTTTTACAGCCGTGTTCCCTTTAAGAAGATGGTGTCTTATTCCGTCCGTAGCCGTGTCAACCTGAGTGCCAAGCCTATCACGGAGGGGTTCCGTGAGTGTGAACGGAGATGTGATGAAGACCCGTGTTGCCGTGGAATCGGATACGTCAGGGACACACAGTCACCTGGATCAGACGTTCTCTGCCTGACTCTGAACAGCTTTGGTATCCAGACGTGTGGTGAAGGAGAACGGACAACCTGGAGAGTCCAGGACTGCACCCCCTCCAGAGTAGAAACCGGAGTGTATCCGCTTGGCTGGTACgagaaaccagTGAACCAGTGGACTAAATCACCACGGTTGTGCCCCAGTTTCCAACTACGTGTTCCTTCAAAGAACGTGAGTTTGAGTGAGTGGAGACTCCTGGATGTGTCCTCTACTCTGGTGGATCCGTCCGTCTCCACGTTTGACATTATTCACATCAGTAAAGACATCGCTGAGGACCTGGACAGGACCAGAGACTGGTGTCTGTCTGCCTGTGAGGAGGCTGAGTCCTGTGTTGTGGTGTCAGTGGGGCGGACCGACTCGGCTGTCCGCTGTGTCCTCTACCCAGACACCCTGGCCTGTGGcccctccactaccaccaccgGAGGTCAGGACTGTCGGCTGGTCATCAGAGAGTCAGCTCTCCAGGTCTACCTCCACAAAGAACCCAAGGCGGCGTTGACGTCAGTGTTTATCCCGGCTCACGGAACGCTCCAGGGATCGTCCGTGACAACGCTGCTCGAGTCAGACAGGAAGACAGTCAGACAGTTCTTGGGAGTTCCGTACGCTCGTCCTCCTATCAGAGCCCTCCGTTTCGTACCCCCCCAGCCTGCTGAATGGAGTGGCACATGGAACGCCACGGTTACCAGACCCAGTTGTCTGCAGCCTGGAGCTGTGGAGTCATCAGCCAGCAGTGAGGACTGTCTGTACCTCAACATCTTCATCCCCAGCGGCATCAGAGGGAGTGCAGCGGTCCTGGTGTTCTTCCATAACCCGTCTGGAGCAGCCGGCGATGACACAGCATCTCTACTGGACGGCTCCTACCTGGCTGCCGTCGGCAACATCGTCGTGGTTACCGTCAACACCAGGGTTGCAGCGTTCGGATTCCTCAGCACAGGGTCCACAGCCCTGCCAGGTAACGCCGGCTTCCAGGACCAGGTAGCCGCTCTGAAGTGGGTCCAGGAGAACATTGAGGCGTTCGGAGGTGACCCCAGGCTGGTGACGGTGGGGGCAGAGCGGAGTGGAGCCGACGTGGCCAGCCTACATCTGACCTCCCCCTCCTCGCGTGGTCTCTTCGACAGGATGCTGCTCATGggtgGCTCTGTGTTCTCCCCTGCCTCAGTGCTGAGTGTATCTAAAGCCCAGGGGCAGGCTGAGGCTCTGGCCAGGGAGCTGGGCTGTTCCTCCTCTGACCCAGAACAGCTGGGCTCCTGCCTGAGAGCAGCTCCAGCACAGGACCTCAACGCTGCCCAGACCAAGTTGCTGTCAGTCAGTGGGCCCCTGCAGGCTTGGGGTCCAGTGGTGGATGGGGTCTCTGTCCAGGGGAAACCCTCCATGGCCCTGATGAATGCAGGCTTCCACAGAGCTGACCTCCTGCTGGGCTCCTCCGCAGAGGATGGACTCATCAGCAGGGCCAAGAGGATCAAGAACTTTGAGGAGCTCCAGGGGCGAGCTGACAGTAAAACAGCATTCTACGAAGccctgtccaactctctgggTGGAGACGATGCCAATGCGTTTGTCAAGGCTGCAGCCACCTGGTTCTACTCCATGCAGCACTCTCCCTCTCCAGCTGGCTACAACCTCTTCTCTCAGGCTCTTAACAGTGCAACCAGagATCTCTTCATTGTGTGTCCCACCATAAAGATGGCCAACTTCTGGGCAGCTAACACCAGATCCAATGTGTTCATGTACTACCTGCCTGAGGACACCGCCCAGACCAGTGCTGACCTGTCAGTACCCCTGGATGTCCACTATGCCTTTGGCCTCCCCCACAGCCCCCTGACCTATGACCTGTTCACCAACACAGAGAGACGCCTCTCCCTACAGATGATGACCTACATGGCCAACTTCATCAAGTCcggAAATCCCAACCAGGCTCACAGTGTGTCCCGCGTGGCCTTCAGCGAGGCGGCGCTGCCCCTCTGGCATGCCTTCCAGTCTCACCCTGAGGGGGACAGCTATATGGAGGTGGAGCCAGGCCTCAGCAACCACAGGGGCCTCCGCAGGGCCCAGTGCTCCTTCTGGGCCGACTACGTCCCCTCTCTGACCGCCTCCATTGGCAAACTTTCATCTGCTGTGTCGGAAGGGGAATCTGCTGGTTTGGGGGCTGGAACTCCAACACCAGAAACCAAGTTATTTGTTGATTTCTTGACAACTGTCACCCAGAGCAAACCCAAGTCAGAGAAGGATGCTTATAATTAGAAAGAACATCCACACTACGTATCGTCTAATCTGCATTTAGGGTTTATCACTCACACATAGTGAGAAATGACATGTTGTTTCAACTGCCAAAGTAGTCGGTAAATTAAGTCGTGTCATTTAAGTGCCTGTTTAGTTTCCACAcaaatgaaataaaacaataaaacaattGCATTACATAATA
>TU123399
tgtgtcagtgtgtgatgAGTCTGTACAGGTTGTCTGACTACTGGGATGTTCATCTCTGTGTCAGTATGTGATGAGTCTGTACAGGTTGTCTGACTACTGTGTCTCTCCTGTTCTAGCTgacgtctgtctctgtgtccgtGTGTGATGAGTCGTCCGTCTCTgtagagtgtgtgagtgaggaaAGCGTCAGTGTTCAGGTCAGCTGGAGGGCTCTTCTCTCAGACCTTCCTATCTCTGTTCTGCCTGATCTGCATGACGTCGGTAAGGAGCACAGACAACATTTCAGAAATATTTCTCAATGAAAAACACCAAAAAATACTGTCTCACACCCTTTAAAT
>TU123395
ATTATTTACCAGAATAATACATTAGCCTCTAAAACGTCATCAACTTATCTCCATTAAAACAGCTGAAGGAAGCACACACAGTTTTTCTACAGAAAATAATAACCTTTTCTATTATTTCAGGAGCTCATTTGTGTTGTTCTGTCTGTTGTGTTTTAACAGTTGATCTGACTGGAAGTGTGGAGAGTTTTTACAGCCGTGTTCCCTTTAAGAAGATGGTGTCTTATTCCGTCCGTAGCCGTGTCAACCTGAGTGCCAAGCCTATCACGGAGGGGTAAGAGACTTTAGGGTGGTGTCAACCTGAGTGACAAGCCTATCACTGAGGGGTAAGAGGCCTTAGGGCGGTGTCAACCTGAGTGCCAAGCCTATCACTGAGGGGTAAGAGACTTTAGGGCGGTGTCAACCTGAGTGACAAGCCTATCACTGAGGGGGTAAGAGGCCTTAGGGCGGTGTTACC

Function

NR:

description
PREDICTED: thyroglobulin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961549.1 False 7738 mRNA 0.57 51 5348252 5447200
TU123399 False 338 lncRNA 0.46 2 5375508 5376125
TU123395 True 454 lncRNA 0.38 1 5398911 5399364

Neighbor

gene id symbol gene type direction distance location
ccdc127a cc127 coding upstream 38217 5306276 ~ 5310035 (+)
LOC118937366 NA coding upstream 62511 5283628 ~ 5285741 (+)
mrpl32 LOC106595598 coding upstream 72668 5274156 ~ 5275584 (+)
LOC110520809 LOC106598492 coding upstream 112358 5228057 ~ 5235894 (+)
tbc1d31 tbc1d31 coding upstream 121211 5195931 ~ 5227041 (+)
ccn4b wisp1 coding downstream 4299 5451499 ~ 5457130 (+)
ptp4a3b LOC106596188 coding downstream 33775 5480975 ~ 5542867 (+)
dync1i1 LOC105016552 coding downstream 95794 5542994 ~ 5572618 (+)
LOC110506279 LOC106595015 coding downstream 128166 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 168796 5615996 ~ 5753847 (+)
G108361 NA non-coding upstream 13767 5333753 ~ 5334485 (+)
G108333 LOC100380869 non-coding upstream 94220 5249713 ~ 5254032 (+)
G108336 NA non-coding upstream 106569 5240611 ~ 5241683 (+)
G108334 NA non-coding upstream 107902 5238227 ~ 5240350 (+)
G108567 NA non-coding downstream 12306 5459506 ~ 5460437 (+)
G108598 NA non-coding downstream 44791 5491991 ~ 5492744 (+)
G108608 NA non-coding downstream 61238 5508438 ~ 5509164 (+)
G108613 NA non-coding downstream 79504 5526704 ~ 5529066 (+)
G108615 NA non-coding downstream 82762 5529962 ~ 5532458 (+)
G108354 LOC106573122 other upstream 48319 5296179 ~ 5299933 (+)
G108280 NA other upstream 211260 5136356 ~ 5136992 (+)
G108048 NA other upstream 489978 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 536677 4808739 ~ 4811575 (+)
G107922 NA other upstream 602666 4744168 ~ 4745586 (+)
G108682 NA other downstream 272765 5719965 ~ 5725579 (+)
G108702 NA other downstream 333014 5780214 ~ 5782921 (+)
G108733 NA other downstream 453311 5900511 ~ 5900950 (+)
phf20l1 LOC100196869 coding upstream 25836 5321554 ~ 5349672 (+)
G108529 NA non-coding upstream 8978 5365831 ~ 5366530 (+)
G108554 NA non-coding downstream 2192 5401556 ~ 5401846 (+)
G108543 NA non-coding downstream 19034 5418398 ~ 5419781 (+)

Expression


Co-expression Network