ccn4b (wisp1)


Basic Information

Item Value
gene id ccn4b
gene name wisp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5451499 ~ 5457130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598289.2
GACGTCAGACAGAAGGACTCACTTGTAGCGAGCGTTGACCGGCGCTGGCTGTCATTTGCACGGCGCGGTTTTACAACAATTTTAGCTCGTGGAataaattctttttttttttttttacaagaatcTCATTCTGGGTTCAATGAAGTTGATATTGGAATCTCGTAATGAGGTGGCTTCTGCCGTGGATTCTAATAGTAGCCAGCACTCATCAGGTCTTTTcccaacattccacagccatgCCTCCCTTGACGGCGACCATAGAGCTGTATAACCGTACAGCGTACTGCAAATGGCCGTGCAAGTGTGCCAAGAGCGCCCCCCTGTGTCCGCCAGGGGTCAGTGTGCTGATGGACGGCTGTGACTGCTGTAAGGCCTGTTCCAAACAGGTGGGGGAGACCTGCAACGAGGCAGACGTCTGTGACTACCATAAGGGACTGTACTGTGACTACAGCGTGGACAAGCCGAGGTACGAAAAAGGAGTATGTGCCTACATGGTGGGCACAGGCTGCGAGTACGACGGAGTGATCTACCGCAACGGTCAGAGCTTCCAACCCAGCTGTAAGTACCGCTGTCTGTGTGTAAACGGCGCCATCGGTTGTGTGCCGCTCTGCACAGACTCCCAACCGCCCCGGGTGTGGTGCCAGACGCCCAGGCGGGTCAAACTGCAGGGCCGATGCTGTGAGCAGTGGATCTGTGACGAGCCCAGGAAGACGCGCAAGGCAGACACCAGGCATGAGGAGATAGTGCGCGCCAGCCACAATGAGGTCTGGCATAAGAACTGCATTACCCAGACAACCTCCTGGTCCCCGTGTTCCAAGACCTGTGGACGTGGCCTGTCCCTGAGGATCTCCAATGCCAACGACCAGTGTGAGTTGATCAAGGAGTCACGCCTCTGCAACATCCGGCCCTGTGACGTGGACATCACCAAGCACATCAAGCCAGGGAAGAAGTGTCTGAACATTTACAGGGAGGAGCAGAGCCAGAACTTCACAATCTCAGGCTGCAACAGCAAGAAGCCCTACCGTCCAAAATACTGTGGTGTCTGCGTGGCCACAGACGATCGCTGCTGCATCCCTTACAAGTCCAGGACTATCGAGGTGGAGTTCGAGTGTCCCAACGGAGCCACTCTGACATGGCAGGTGATGTGGATCAACGCCTGCTTCTGTAACCTCAGCTGCAGGAACCCCAACGACATCTTCTCTGAGCTGGAGCACTACTACGACCACAATGAGGTCATCAACTGACAACTGAGCAGCCTTGTCCGAGCCTGAACGTACGGCCCACAGGGCAGGAGACCATCTCttgtttctgtagcatgaggtAGTTTAGTGTACAAGTACAACCCCTGGGTAAGACGCTAGTCTGCCGCGGGACCTTTTACCCAAATACATCTCCTTAatgctgaatgccaagcgtttCTAGAGTCTTTGGTATGATTCCACTGGGGAGAACTGAGCAGAGGACAGGTTCATTTAGGTTATTATTGACTCCAAGCTTTACATTCCTTGGAATAAAGGGATTGATGATTTGTTGGTTAGTTGAATTAGATGTTCAAGTACCAGGCTGGAACAAAGCCTGCACACAACTAAGGTCCCCAGGAGTAGGATTGAAGAACATTGCAGTTGAACCCTGCCCAAACTCTTCATTATGATCttgataaaaaaa

Function

symbol description
wisp1 CCN family member 4

NR:

description
WNT1-inducible-signaling pathway protein 1-like

GO: NA

KEGG:

id description
K22471 CCN4, WISP1; CCN family member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598289.2 True 1665 mRNA 0.52 5 5451499 5457130

Neighbor

gene id symbol gene type direction distance location
tg LOC106573164 coding upstream 4299 5348252 ~ 5447200 (+)
phf20l1 LOC100196869 coding upstream 101827 5321554 ~ 5349672 (+)
ccdc127a cc127 coding upstream 141464 5306276 ~ 5310035 (+)
LOC118937366 NA coding upstream 165758 5283628 ~ 5285741 (+)
mrpl32 LOC106595598 coding upstream 175915 5274156 ~ 5275584 (+)
ptp4a3b LOC106596188 coding downstream 23845 5480975 ~ 5542867 (+)
dync1i1 LOC105016552 coding downstream 85864 5542994 ~ 5572618 (+)
LOC110506279 LOC106595015 coding downstream 118236 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 158866 5615996 ~ 5753847 (+)
mylipb LOC106596795 coding downstream 355117 5812247 ~ 5839646 (+)
G108543 NA non-coding upstream 31718 5418398 ~ 5419781 (+)
G108554 NA non-coding upstream 49653 5401556 ~ 5401846 (+)
G108551 NA non-coding upstream 52905 5398337 ~ 5398594 (+)
G108549 NA non-coding upstream 59833 5391422 ~ 5391666 (+)
G108567 NA non-coding downstream 2376 5459506 ~ 5460437 (+)
G108598 NA non-coding downstream 34861 5491991 ~ 5492744 (+)
G108608 NA non-coding downstream 51308 5508438 ~ 5509164 (+)
G108613 NA non-coding downstream 69574 5526704 ~ 5529066 (+)
G108615 NA non-coding downstream 72832 5529962 ~ 5532458 (+)
G108354 LOC106573122 other upstream 151566 5296179 ~ 5299933 (+)
G108280 NA other upstream 314507 5136356 ~ 5136992 (+)
G108048 NA other upstream 593225 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 639924 4808739 ~ 4811575 (+)
G107922 NA other upstream 705913 4744168 ~ 4745586 (+)
G108682 NA other downstream 262835 5719965 ~ 5725579 (+)
G108702 NA other downstream 323084 5780214 ~ 5782921 (+)
G108733 NA other downstream 443381 5900511 ~ 5900950 (+)

Expression


Co-expression Network