ndrg1b (LOC106606139)


Basic Information

Item Value
gene id ndrg1b
gene name LOC106606139
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5457853 ~ 5477974 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935840.1
GAGGATGACGTGGAGACTCAGTTTGGATGGGTCCACTGCACCATGAAGGGGGTTCCCAAGGGTAGCCGCCCCGTCATCATGACCTTCCACGATATTGGACTGAACTACAAGTCGTGCTTCAACCTCCTGTTCAGCCACGAGGACATGCAGGAGATCATGAGGCACTTTGCCGTGTGCCACGTTGATGCCCCTGGGCAGCATGAGGGTGCCTCCACTCTCTCCACAGAGTACACCTACCCCTCTATGGACCAGCTCTCTGAGACTCTCCCTCAGGTCCTCAAGCACTTTCGGTTTAAGAGTGTCATTGGACTGGGCAGCGGTGCTGGTGCCTACATCCTCGCTACATTTGCTCTGAACCATCCAGATAAGGTTGAGGGACTTGTcctcatcaacatcaatgctcgCGCAGAGAGCGTGATTGATTCACTTACACACAAGatGACTGGCTGGATCCAAGCACTTCCTGATCATGTTCTAAACCACCTGTTTGGAAAGGAGGAGATCCAAAACAACCCTGATCTGATCGCCACATACCGCAACCACATCACCAATGATGTCAACCAGTCCAACCTGGCCCAGTTCTTCAAGTCCTACCAGAGCCGCAGGGGCCTGGAGATCGAGAGGCCTGTCCCAGGGAGAAACAATAACGCCAGAACTCTGCAGTGTCCTGCTCTGTTGGTGGTGGGAGACAGCTCCCCTGCAGTCGAGGCTGTGGTCGAGAGCAACGCAAAGCTCAACCCAACACAGACCACACTGCTCAAGATGGCTGACTGTGGAGGACTTCCCCAGGTGAGTCAGCCTGGCAAACTGACAGAGGCCTTCAAGTACTTCATCCAGGGCATGGGTTACATGTCCTCAGCCAGCATGACCAGACTGGTGAGGTCCCGCACCGCCTCAGGCTCCAGCATCGCCTCCTGCGACAGCAGCAGGAGCCGCTCTCACGCCAACGACCACCAGCCCGTCCGGGAGCACACCGACGTGTCCATGGAGAATGTCTCCAACAGCACCGTAGATCAGACCATTGTCGTGTCCAGCAGCAAGACTGAGGACGTCTGCTAGTGCCCTGGTCACTGAAAGGTCATAGGTTGTCTCCTAAATGGCTCCccatttcctttatagtgcactacttttgactatgtGGGAAATAGGGaaacatttgggacacaacccgtGTCCCTAAACCCTGACCTCATAATCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCAtaacccctgtcctgtcctgtctacccTACTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCCCATAACCCCTGTCCTGTCCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCAtaacccctgtcctgtcctgcctacTGCCTGTGTTGCTGCTGACAACAAACCTCAtaacccctgtcctgtcctgtctacccTACTGCCTGTGTTGCTGCTGACAACAAACCTCAtaacccctgtcctgtcctgtctacccTACTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCCCATAACCCCTGTCCTGTCCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCCCATAACCTCTGTCCTGTCCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCAtaacccctgtcctgtcctgcctacTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCAtaacccctgtcctgtcctgtcctgcctacTGCCTGTGTTGCTGCTGACAACAAACCTCAtaacccctgtcctgtcctccctactgcctgtgTTGCTGCTGACAACAAACCTCATAACCCCTGGcctgtcctccctactgcctgtgTTGCTGCTGACAACAAACCCCATAACCCCTGTCTTTTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAATAAACCACAACATACGGCTATGATAGACTGTCCTCTACCTATGCTCTGTTCTCACTGCATTGTGGGTAATAAGAGTTTATACCCAACGGTTGTCATACTGTACGTCATTTGGGTGATGTGTAATCTGTATGGATGTTCCTCTGTGGAAATAGTATCTCTGATATGTTAGAATGTAACAATGCTGGGGGGATTTTCCACCAGTAACACGTAATGGACAGTTGTGGTGTTGAAGCCATCTGTGACTATTGTCTGGCTTTTTATATGTGATGGATCAAATTGACGACtccctattttatttatttttataacatGAGACGTCTGTAATACATAAAGACTGTAGCTATCAGTGATCCTAGGAAGACGCTTAAATAAGATGTATTAATGTTTGGTCAAATCTTTCAAATGATGAAAAACTGATTATATTAAGATTTAAATGATATAGAAATGCAATGTACGTATAGTACCACTTTGTATCAAAGAAATAGCAAAAAATTATGACGAAATTATTTTtacaaaatgtatttgaaaagaTTTGTCACGACCCAAATCTTAAttctttgtatttattttaacCAATCAAATGTGACTTCCTGGATGAGTTTGTTTGTTGTTTATGATGACATGGATATGATACATGGTTTACTAGAGTATTGACCAATGAAATAAATGACAACACTTATTGAGCCGATCTCAATCAAACTTCAATCAATAAAAAGTTGATACACTTTTAACCTCGTAGAGCTCAAATAACAACTGCCTTGACAATGCAGACATTGAGACAAACACTATTATTGTTCACTTAAGAGTCAATGGAAATCAATGCAAAACTGAGAAAATGCGAGAGAATCTTGTCTGATATACTGTACACTTTGCAGTGAACTACAAAATACTTGACTAAATGTTTTGAGCACAACAGTACATACACAGTAAGCTTAATGACATGACACAAAAAGAGGGAAACATAAGAGTACACAACAGGATCACCACTCAAGTGGTTAATGCCCTAACTTGGTAGAAGATTATCCCCATATGAATATGATGCATAATTACAATAGGTTGGACGCCTGTGTCCTACTATGGTATCATCACAAATACATGATCAACTTCCGCtaatatactgagtgtacaaaacattccatgacagactgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcactttgttaaatccacttcaatcagtgtagatgaaggggaggagacctggttaaagaatgatttttaagccttgagacatggattgtgtgtgtgtgccattcttatggtgaatgggtaagacaaaatatgtcagtgcctttgaacagggtatggtagtaggtgccaggagcaccggtttgtatcaagaactgcaacgctgctgggtttttcacgctcaacagtttcctgtgtgtatcaaga
>TU124239
ACCAGAGCCGCAGGGGCCTGGAGATCGAGAGGCCTGTCCCAGGGAGAAACAATAACGCCAGAACTCTGCAGTGTCCTGCTCTGTTGGTGGTGGGAGACAGCTCCCCTGCAGTCGAGGCTGTGGTCGAGAGCAACGCAAAGCTCAACCCAACACAGACCACACTGCTCAAGATGGCTGACTGTGGAGGACTTCCCCAGTGTCCTCAGCCAGCATGACCAGACTGGTGAGGTCCCGCACCGCCTCAGGCTCCAGCATCGCCTCCTGCGACAGCAGCAGGAGCCGCTCTCACGCCAACGACCACCAGCCCGTCCGGGAGCACACCGACGTGTCCATGGAGAATGTCTCCAACAGCACCGTAGATCAGACCATTGTCGTGTCCAGCAGCAAGACTGAGGACGTCTGCTAGTGCCCTGGTCACTGAAAGGTCATAGGTTGTCTCCTAAATGGCTCCccatttcctttatagtgcactacttttgactatgtGGGAAATAGGGaaacatttgggacacaacccgtGTCCCTAAACCCTGACCTCATAATCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCAtaacccctgtcctgtcctgtctacccTACTGCCTGTGTTGCTGCTGACAACAAACCTCAtaacccctgtcctgtcctgcctacTGCCTGTGTTGCTGCTGACAACAAACCTCAtaacccctgtcctgtcctgtctacccTACTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAACCTCATAACCCCTGTCCTGTCTACCCTACTGCCTGTGTTGCTGCTGACAACAAAC
>TU124240
cattattaaagtggcattattaaagtgtctttTGGAATGTTCTTTTGTTTGTACACATCtacactgttctgtactgtacagaCACAGCCTGTGTGATGGTTATCATCGAGTTAGACGAACCCCTGAAACAATGAAGCTCATAGTAGATATCACAACAAAGTTCATCTTGTTGTGATAAGTGTTTGTGTCATTTCCTACTCTCTGAATCCTACATATGTCCCAAATGGGTTGTGCTATGTTCTTCATGTCTTTATTCTTCCTGTCTTTATTCTTCCTGTCTACAGCTGAACCATCCAGATAAGGTTGAGGGACTTGTcctcatcaacatcaatgctcgCGCAGAGAGCGTGATTGATTCACTTACACACAAGGTAGCATAACTAACACAAGATAACAT

Function

NR:

description
PREDICTED: protein NDRG1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935840.1 False 3765 mRNA 0.47 10 5457853 5472467
TU124239 False 923 lncRNA 0.55 6 5459770 5465827
TU124240 True 397 lncRNA 0.39 2 5468664 5477974

Neighbor

gene id symbol gene type direction distance location
LOC110520858 LOC106606136 coding downstream 27068 5422229 ~ 5430785 (-)
LOC110507177 NA coding downstream 135205 5309738 ~ 5322648 (-)
LOC110520756 LOC106573122 coding downstream 151788 5296155 ~ 5306065 (-)
LOC110520755 LOC106595600 coding downstream 161955 5275623 ~ 5295898 (-)
LOC110507251 LOC106595421 coding downstream 183656 5268132 ~ 5274197 (-)
rbfa LOC106573367 coding upstream 119787 5592254 ~ 5594852 (-)
adnp2a LOC106573358 coding upstream 122812 5595279 ~ 5600029 (-)
pard6ga LOC106573343 coding upstream 128155 5600622 ~ 5604727 (-)
zgc:136493 NA coding upstream 132496 5604963 ~ 5611339 (-)
dtnbp1a dtbp1 coding upstream 281538 5754005 ~ 5812038 (-)
G109130 NA non-coding downstream 37680 5418425 ~ 5420173 (-)
G109106 NA non-coding downstream 57335 5399539 ~ 5400518 (-)
G109105 NA non-coding downstream 58684 5398922 ~ 5399169 (-)
G109101 LOC106606138 non-coding downstream 72402 5385162 ~ 5385451 (-)
G109100 NA non-coding downstream 73382 5382671 ~ 5384471 (-)
G109155 NA non-coding upstream 7801 5480268 ~ 5480492 (-)
G109173 NA non-coding upstream 36949 5509416 ~ 5510006 (-)
G109177 NA non-coding upstream 51522 5523989 ~ 5528740 (-)
G109178 NA non-coding upstream 53862 5526329 ~ 5530518 (-)
G109179 NA non-coding upstream 62257 5534724 ~ 5535977 (-)
G108477 NA other downstream 216189 5240618 ~ 5241664 (-)
G108033 NA other downstream 613762 4843061 ~ 4844091 (-)
G107849 NA other downstream 905888 4550313 ~ 4551965 (-)
G107843 NA other downstream 918230 4539235 ~ 4539623 (-)
G109302 NA other upstream 365210 5837677 ~ 5840273 (-)
atxn1b LOC106597954 other upstream 389102 5860711 ~ 5875088 (-)
G109273 LOC106606171 other upstream 410515 5882982 ~ 5886155 (-)
G109430 NA other upstream 901443 6373910 ~ 6374361 (-)
G109469 LOC106590995 other upstream 913836 6386303 ~ 6389236 (-)

Expression


Co-expression Network