LOC110505637 (LOC106573538)


Basic Information

Item Value
gene id LOC110505637
gene name LOC106573538
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5953886 ~ 5958813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936052.1
AGGAGAGCAAACATTAGATCATATAAAGACTGGAACTATCCTTCGCATCACTGAAACATCAACAGGCAGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGGGAGTGAGACAGACTTACTGTACAGAGACACAGGGGGATTCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCGTTATAGTGAGTGAGACATATTGAGATATGATGCTGGCTGTGTGTGTCACTGTTGTCCTGGGCCTTCTCTCAGTGAGTGGCTCCCAGGCGGCCCCTTTAACCTGTGAGGATCTCCTGAGACCACTGGAGCTGAGCAGTGTCAATCAGACTCTGGGGAAGTGGGTGTATATTGCTGAGAGTTCAGACCGTCCTTTCTGGGAACAAATACTGTATACCTTATTACACAGTGCCTGGATAGAGGTCTCTGTGCCGGTCGGTACCCAGAACAACATTCTTGACATCGCCCAGTTCCATGGCTTCGGTATTCCATATCAAAATACTTTTGGATTCGGATGCTCCAGGATCAACTCTAACTTTACTCTGCATGACAATAGCACATGGACCTCAGTGAGCCCCATCCCTGTTACTGAGGTTCTCCTGACAACGTGCTCAGAATGTCTCCTGACACTGGAGAAATGGGGTGAGGATGGGAAGACCTACACCTCTCTAACGCTCTACAGTAGGAGAAGGGAGCTCACTGCTACTGAACTGGACTTCTATAAGAAACAGGTGGATTGTCTCAGTCTGCCACCAGCGACATTCATCGATCCAAAGAAAGATCTCTGTCTCGACACAACTCCACTCTTAGAAGATCAAATTGCGAAGGAAGTTGAGAATGCAGGTGAACTTATTTCAGAGATTCCAAGAATGCTCAGAAATGCATTTGAAGAATTAAAGAATTCTGTTTATCAGCCATTTTCTGATATTTTCGGTTAATGAGTAGTTGCCTCCTCCTCCCTGATTGGTTTGCTGCCCACCATGTATTCTACAGTAACCCAGGGTTACAGTACCTAACCCAGCAAGCCTGTAAACAGTCCCTGATGCCTTGATGTGGGACCAAACTCCACTCTGCTCATGTTGCTCTACATTCAACACAATAAATCCAGATTAAGACAA
>TU123496
ccgtcctcctatagatCCTCATGCCAGCCTCCTCTGCCAGACAGAACAAACAGTACATGTCCCTGACATCTGATCTGTACTACCATGAAAGGCAGAGGAGAGCAAACATTAGATCATATAAAGACTGGAACTATCCTTCGCATCACTGAAACATCAACAGGCAGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGGGAGTGAGACAGACTTACTGTACAGAGACACAGGGGGATTCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCGTTATAGTGAGTGAGACATATTGAGATATGATGCTGGCTGTGTGTGTCACTGTTGTCCTGGGCCTTCTCTCAGTGAGTGGCTCCCAGGCGGCCCCTTTAACCTGTGAGGATCTCCTGAGACCACTGGAGCTGAGCAGTGTCAATCAGACTCTGGGGAAGTGGGTGTATATTGCTGAGAGTTCAGACCGTCCTTTCTGGGAACAAATACTGTATACCTTATTACACAGTGCCTGGATAGAGGTCTCTGTGCCGGTCGGTACCCAGAACAACATTCTTGACATCGCCCAGTTCCATGGCTTCGGTATTCCATATCAAAATACTTTTGGATTCGGATGCTCCAGGATCAACTCTAACTTTACTCTGCATGACAATAGCACATGGACCTCAGTGAGCCCCATCCCTGTTACTGAGGTTCTCCTGACAACGTGCTCAGACTGCCTCCTGACCCTGGAGAGATGGGATGAGGATGAGAAGACCTACACCTCTCTAACGTTCTACAGTAGGAGAAGGGAGCTCACTGCTACTGAACTGGAT
>TU123500
ccgtcctcctatagatCCTCATGCCAGCCTCCTCTGCCAGACAGAACAAACAGTACATGTCCCTGACATCTGATCTGTACTACCATGAAAGGCAGAGGAGAGCAAACATTAGATCATATAAAGACTGGAACTATCCTTCGCATCACTGAAACATCAACAGGCAGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGGGAGTGAGACAGACTTACTGTACAGAGACACAGGGGGATTCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCGTTATAGTGAGTGAGACATATTGAGATATGATGCTGGCTGTGTGTGTCACTGTTGTCCTGGGCCTTCTCTCAGTGAGTGGCTCCCAGGCGGCCCCTTTAACCTGTGAGGATCTCCTGAGACCACTGGAGCTGAGCAGTGTCAATCAGACTCTGGGGAAGTGGGTGTATATTGCTGAGAGTTCAGACCGTCCTTTCTGGGAACAAATACTGTATACCTTATTACACAGTGCCTGGATAGAGGTCTCTGTGCCGGTCGGTACCCAGAACAACATTCTTGACATCGCCCAGTTCCATGGCTTCGGTATTCCATATCAAAATACTTTTGGATTCGGATGCTCCAGGATCAACTCTAACTTTACTCTGCATGACAATAGCACATGGACCTCAGTGAGCCCCATCCCTGTTACTGAGGTTCTCCTGACAACGTGCTCAGACTGCCTCCTGACCCTGGAGAGATGGGATGAGGATGAGAAGACCTACACCTCTCTAACGTTCTACAGTAGGAGAAGGGAGCTCACTGCTACTGAACTGGATtgtctctactactactactactactactactactactactacta
>TU123491
TCCCTGACATCTGATCTGTACTACCATGAAAGGCAGAGGAGAGCAAACATTAGATCATATAAAGACTGGAACTATCCTTCGCATCACTGAAACATCAACAGGCAGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGGGAGTGAGACAGACTTACTGTACAGAGACACAGGGGGATTCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCGTTATAGTGAGTGAGACATATTGAGATATGATGCTGGCTGTGTGTGTCACTGTTGTCCTGGGCCTTCTCTCAGTGAGTGGCTCCCAGGCGGCCCCTTTAACCTGTGAGGATCTCCTGAGACCACTGGAGCTGAGCAGTGTCAATCAGACTCTGGGGAAGTGGGTGTATATTGCTGAGAGTTCAGACCGTCCTTTCTGGGAACAAATACTGTATACCTTATTACACAGTGCCTGGATAGAGGTCTCTGTGCCGGTCGGTACCCAGAACAACATTCTTGACATCGCCCAGTTCCATGGCTTCGGTATTCCATATCAAAATACTTTTGGATTCGGATGCTCCAGGATCAACTCTAACTTTACTCTGCATGACAATAGCACATGGACCTCAGTGAGCCCCATCCCTGTTACTGAGGTTCTCCTGACAACGTGCTCAGACTGCCTCCTGACCCTGGAGAGATGGGATGAGGATGAGAAGACCTACACCTCTCTAACGTTCTACAGTAGGAGAAGGGAGCTCACTGCTACTGAACTGGAT
>TU123495
TCCCTGACATCTGATCTGTACTACCATGAAAGGCAGAGGAGAGCAAACATTAGATCATATAAAGACTGGAACTATCCTTCGCATCACTGAAACATCAACAGGCAGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGGGAGTGAGACAGACTTACTGTACAGAGACACAGGGGGATTCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCGTTATAGTGAGTGAGACATATTGAGATATGATGCTGGCTGTGTGTGTCACTGTTGTCCTGGGCCTTCTCTCAGTGAGTGGCTCCCAGGCGGCCCCTTTAACCTGTGAGGATCTCCTGAGACCACTGGAGCTGAGCAGTGTCAATCAGACTCTGGGGAAGTGGGTGTATATTGCTGAGAGTTCAGACCGTCCTTTCTGGGAACAAATACTGTATACCTTATTACACAGTGCCTGGATAGAGGTCTCTGTGCCGGTCGGTACCCAGAACAACATTCTTGACATCGCCCAGTTCCATGGCTTCGGTATTCCATATCAAAATACTTTTGGATTCGGATGCTCCAGGATCAACTCTAACTTTACTCTGCATGACAATAGCACATGGACCTCAGTGAGCCCCATCCCTGTTACTGAGGTTCTCCTGACAACGTGCTCAGACTGCCTCCTGACCCTGGAGAGATGGGATGAGGATGAGAAGACCTACACCTCTCTAACGTTCTACAGTAGGAGAAGGGAGCTCACTGCTACTGAACTGGATtgtctctactactactactactactactactactactactacta
>TU123497
TCCCTGACATCTGATCTGTACTACCATGAAAGGCAGAGGAGAGCAAACATTAGATCATATAAAGACTGGAACTATCCTTCGCATCACTGAAACATCAACAGGCAGAGTGAGACAGACTTACTgtacagagacacagggagattCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggaGATTCATTATAGTGAGTGAGACAGACTTACTgtacagagacacagggagattCGTTATAGTGAGTGAGACATATTGAGATATGATGCTGGCTGTGTGTGTCACTGTTGTCCTGGGCCTTCTCTCAGTGAGTGGCTCCCAGGCGGCCCCTTTAACCTGTGAGGATCTCCTGAGACCACTGGAGCTGAGCAGTGTCAATCAGACTCTGGGGAAGTGGGTGTATATTGCTGAGAGTTCAGACCGTCCTTTCTGGGAACAAATACTGTATACCTTATTACACAGTGCCTGGATAGAGGTCTCTGTGCCGGTCGGTACCCAGAACAACATTCTTGACATCGCCCAGTTCCATGGCTTCGGTATTCCATATCAAAATACTTTTGGATTCGGATGCTCCAGGATCAACTCTAACTTTACTCTGCATGACAATAGCACATGGACCTCAGTGAGCCCCATCCCTGTTACTGAGGTTCTCCTGACAACGTGCTCAGACTGCCTCCTGACCCTGGAGAGATGGGATGAGGATGAGAAGACCTACACCTCTCTAACGTTCTACAGTAGGAGAAGGGAGCTCACTGCTACTGAACTGGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936052.1 False 1188 mRNA 0.46 2 5953981 5955445
TU123496 False 881 TUCP 0.48 3 5953886 5958769
TU123500 False 925 TUCP 0.36 3 5953886 5958813
TU123491 False 822 TUCP 0.50 3 5953945 5958769
TU123495 False 866 TUCP 0.47 3 5953945 5958813
TU123497 True 774 TUCP 0.48 4 5953945 5958769

Neighbor

gene id symbol gene type direction distance location
LOC110505528 gmpr coding upstream 99807 5841517 ~ 5854355 (+)
mylipb LOC106596795 coding upstream 114335 5812247 ~ 5839646 (+)
jarid2a LOC106573577 coding upstream 200134 5615996 ~ 5753847 (+)
LOC110506279 LOC106595015 coding upstream 361728 5575366 ~ 5592253 (+)
dync1i1 LOC105016552 coding upstream 381363 5542994 ~ 5572618 (+)
LOC110505679 LOC106579367 coding downstream 20755 5976200 ~ 6002265 (+)
LOC118937375 NA coding downstream 22821 5978266 ~ 5979890 (+)
setd2 LOC106593284 coding downstream 47547 6002992 ~ 6049501 (+)
LOC118937376 NA coding downstream 136634 6092079 ~ 6093940 (+)
ccdc12 ccd12 coding downstream 275924 6231369 ~ 6250042 (+)
G108648 NA non-coding upstream 5640 5947511 ~ 5948341 (+)
G108753 NA non-coding upstream 8990 5943752 ~ 5944991 (+)
G108752 NA non-coding upstream 12725 5941005 ~ 5941256 (+)
G108736 NA non-coding upstream 42045 5911688 ~ 5911936 (+)
G108731 NA non-coding upstream 53963 5899724 ~ 5900018 (+)
G108627 NA non-coding downstream 258 5955703 ~ 5962125 (+)
G108756 NA non-coding downstream 27831 5983276 ~ 5983771 (+)
G108758 NA non-coding downstream 38088 5993533 ~ 5993799 (+)
G108760 NA non-coding downstream 40357 5995802 ~ 5996126 (+)
G108789 NA non-coding downstream 127691 6083136 ~ 6085913 (+)
G108733 NA other upstream 53031 5900511 ~ 5900950 (+)
G108702 NA other upstream 171337 5780214 ~ 5782921 (+)
G108682 NA other upstream 228402 5719965 ~ 5725579 (+)
ptp4a3b LOC106596188 other upstream 411116 5480975 ~ 5542867 (+)
G108775 LOC106606109 other downstream 101551 6056996 ~ 6058335 (+)
G108805 LOC106594197 other downstream 241487 6151712 ~ 6199341 (+)
G108874 LOC106573552 other downstream 326626 6282071 ~ 6285940 (+)
G109020 NA other downstream 677633 6633078 ~ 6633913 (+)
G108773 NA non-coding downstream 128363 6087176 ~ 6087617 (+)

Expression


Co-expression Network