LOC110505679 (LOC106579367)


Basic Information

Item Value
gene id LOC110505679
gene name LOC106579367
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5976200 ~ 6002265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034712.1
AATCAATCATACAAGGACATTTAGGGAAGACCGGTCTTTTATTTGACGACCTCCTAAACTTCTGGGCCCGTGTTCATGAAGCATATTTGGTTTTGGTTCGACATGTTCAACATTGTCTTCGTGTTACTGTTTGTCAATAGGATATAATCGCCTGGTTGTGAGTCATTTTCCTTAATCCTTGTAGGGTGTAATGTAATGCGCAATGATACGTGCTTCTGTGCAGGAAGTCAATTTCTCTGGATGACACACCTCTCTGCCGTTTCCTGGTTTTACGGATGAACTCAAATATACTGATTAAAGGGATTGGTTAGCCTACTGTCAAAAGTCAATGTAAAATGTACAGTACAAAAGTCAATGTAAAATGTACAGTACAAAAGTCAATGTAAAATTTACAGTACAAAAGTCAATGTAAAATTTACAGTACAAAAGTCAATGTACAATGTACAGTACAATAGTACAAGCTTTATCCGGGTGTTATTTGTCATGTTGACGTTGAATTCATTTTAATTTTCAGACGACAACACGAATCAAATCACTTTGATGATATAGTTATAGACAATGACGTGATCCAACCATTACTTATTAGATGTTACTGTACCTCTCGCACAATGTCTCATTCTTTTCATCACTGAAACCTGGTCCTGGTGCCATATTCCTGAAAAAAAAAGGTGTTTTGGATGCCACCAAGGCCGCATTTCGTGCTGTTTGCCCAGAGGAAGATGGAGGGTCATGGATGAAGAAGTGGGTCTCCTTCGGGCAGATGGTGCCACCGTGGGGGAGTGATTGACCACCTGCAGAGAGGAAGGGGGGCATATAATCCCAATCCACTATCGGGGTGCAACATGGCTGCAATCCAGGATGAGTGGCAGGGGCTGAAAATCCTGGTCAGCCACAATTTCAAGGACAAGTCTTAGTGGCATGTGGGAGACAATGTTGACAAAGGACCCCTACAGGCACGATTACAAGAACATACTGGAGTTGGTGCAGCTTATGCTGGTGCTGCCCATTTCAGCCGCCCAGTGTGAGTGAGGCTTCTCTGCACAGAACCGGATTAAGATTGACAAGAAGCTGCCTTGGGGTCTCTACCACCGAAGACCTGATGAGGATCAGCCTGGGGGTCTTCTGTCGAGGAGTTGGATCCCACTCCTGCCGTGGACCGCTGGCTGACCTCTAAGCGTGCCAGACGGCCAACATACAAAAGCAGCTGGACAACTGATATCCTTTGCGTCTAGTAGCCATGAGTCAATGTGTGATTGGTGGTATGTGTCCCATGTGTCCCTTAGTACACGCACACAGTATAAATATGTATGTAATAAATTGTTTGTTAATAAACTCTGTGTTACTTAAA
>XR_005034713.1
CTGACGCAGTCCAGTCAGAGTGAGAGAAAGGTGAACAACACTGAGGGAAAAGTATAGGTATAGGCTGTAAATTAACGTGCAGACATCGCTAAAAATGAAGCCCATTCAATTGTATTTTAAGCGAATAAGAGACGAGGAGAAATAGTAATCAGGCGAGGGAGATATGCAAAGTTCAACTAATGAAGCCTCTTCACAAGGTTTACATGAGGCGGTTAGCGAAGCTACGGTGTCCCCGGCTGTCACTTCAACGTCCACTGTAGCCGGTGGAGGGagaacatatagattcaatgggaATTGGTTCAAAATGTCACCATGGCTAGAGTTAGAAAACAATGTAATGTTCTGCAAATATTGTAAAAGGTTGAAACAGGCGGACAACCCGTCCTTCGTGTCAGGAAAACCCGCATCTGAAAAGAGATATAGCGCAGTGAAACGTAACATCTGGCTGCGTGCGGCATATCCAGTGCAGAGATCTGAACATGTTGAGACAGGAGACACCATAAAGCACGGTGTCAGCAGCCTTGAGAAGGCAAGTGTTTCTGTCTGAGGAGGAGACAGCTGAAAATAAGATAAACATACCATACTAAATTGCGAAAGAACCTTTAGTCAAATTTGGTCGGACAACAGACTTCGGAACACTCCATGCCATTGGTGTTTTGGATGCCACCAAGGCCGCATTTCGTGCTGTTTGCCCAGAGGAAGATGGAGGGTCATGGATGAAGAAGTGGGTCTCCTTCGGGCAGATGGTGCCACCGTGGGGGAGTGATTGACCACCTGCAGAGAGGAAGGGGGGCATATAATCCCAATCCACTATCGGGGTGCAACATGGCTGCAATCCAGGATGAGTGGCAGGGGCTGAAAATCCTGGTCAGCCACAATTTCAAGGACAAGTCTTAGTGGCATGTGGGAGACAATGTTGACAAAGGACCCCTACAGGCACGATTACAAGAACATACTGGAGTTGGTGCAGCTTATGCTGGTGCTGCCCATTTCAGCCGCCCAGTGTGAGTGAGGCTTCTCTGCACAGAACCGGATTAAGATTGACAAGAAGCTGCCTTGGGGTCTCTACCACCGAAGACCTGATGAGGATCAGCCTGGGGGTCTTCTGTCGAGGAGTTGGATCCCACTCCTGCCGTGGACCGCTGGCTGACCTCTAAGCGTGCCAGACGGCCAACATACAAAAGCAGCTGGACAACTGATATCCTTTGCGTCTAGTAGCCATGAGTCAATGTGTGATTGGTGGTATGTGTCCCATGTGTCCCTTAGTACACGCACACAGTATAAATATGTATGTAATAAATTGTTTGTTAATAAACTCTGTGTTACTTAAA
>XR_005034711.1
GGGTATAACACTGAAGGGGAATCTGAAAGACTACACGGACCTCACCAATCCCTAGCTAAAGCAGCACATGGAGGCGGCCATCAACATTGGCGTGGATGATCTCAAAGCCAGGTTTGGTGGTTTGCTGAAGAATGAGGGTGTCCAGACCCCGGTGGAGACTTTCAGAGTGCTAAACCCTGACACATGGTCAGAAGACCGTTTCAATCAGTGTCGTCACtagctctgagaccttgaagtagtggttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgatgcttcgagggtgaatATTGAcatgtgcagagcgtccctggtacGCGCCCGGgtcgaggggacggactaaagttatactgtacatttacaTATTTGCAAACTCACTTGCTCTTTTAAATCCTACAGATCGGGGTGCAACATGGCTGCAATCCAGGATGAGTGGCAGGGGCTGAAAATCCTGGTCAGCCACAATTTCAAGGACAAGTCTTAGTGGCATGTGGGAGACAATGTTGACAAAGGACCCCTACAGGCACGATTACAAGAACATACTGGAGTTGGTGCAGCTTATGCTGGTGCTGCCCATTTCAGCCGCCCAGTGTGAGTGAGGCTTCTCTGCACAGAACCGGATTAAGATTGACAAGAAGCTGCCTTGGGGTCTCTACCACCGAAGACCTGATGAGGATCAGCCTGGGGGTCTTCTGTCGAGGAGTTGGATCCCACTCCTGCCGTGGACCGCTGGCTGACCTCTAAGCGTGCCAGACGGCCAACATACAAAAGCAGCTGGACAACTGATATCCTTTGCGTCTAGTAGCCATGAGTCAATGTGTGATTGGTGGTATGTGTCCCATGTGTCCCTTAGTACACGCACACAGTATAAATATGTATGTAATAAATTGTTTGTTAATAAACTCTGTGTTACTTAAA
>TU123521
TGTAGCCGGTGGAGGGagaacatatagattcaatgggaATTGGTTCAAAATGTCACCATGGCTAGAGTTAGAAAACAATGTAATGTTCTGCAAATATTGTAAAAGGTTGAAACAGGCGGACAACCCGTCCTTCGTGTCAGGAAAACCCGCATCTGAAAAGAGATATAGCGCAGTGAAACGTAACATCTGGCTGCGTGCGGCATATCCAGTGCAGAGATCTGAACATGTTGAGACAGGAGACACCATAAAGCACGGTGTCAGCAGCCTTGAGAAGGCAAGTGTTTCTGTCTGAGGAGGAGACAGCTGAAAATAAGATAAACATACCATACTAAATTGCGAAAGAACCTTTAGTCAAATTTGGTCGGACAACAGACTTCGGAACACTCCATGCCATTGGTGTTTTGGATGCCACCAAGGCCGCATTTCGTGCTGTTTGCCCAGAGGAAGATGGAGGGTCATGGATGAAGAAGTGGGTCTCCTTCGGGCAGATGGTGCCACCGTGGGGGAGTGATTGACCACCTGCAGAGAGGAAGGGGGGCATATAATCCCAATCCACTGTATGCCACATATATTTGTAACTAATAAATTATctgatttagttttatttgctaGCAGATAATGTTAAACAATACTGTGTGTGCTCTAAGTGCTGGAATGGTAAATACCACAGAATTATAGTTTTCTGTTGGCACAAGAGATGTAAGAGGGGTGAATTGTTTGGAAGATTCTGTTCTGACTTTCACAGGCTCGAGCTGGCAATACTGACCATTCAGAAGAAAGAGCCAAATGTGTCTGTCGTGTATGATCTTCTGAATCTGATATGTATCACTTCAGCGGAAAATCCAAACGAGAGCTCTATGTTCTCGGGCAAGAGCTCAGTGTAGATATTTGCACACCGTCTAGCGTCAAGGGAACTCGCTGGATCCCCCATGTCCACAGAGCGCTCAAAGTGTTCCTGCGGCATGGACAAGACAAGGACCTTACCGCTGACGAAGGCCAGTACTCCGTTGTTCtgcaacacatcaacaacagcggATGTTCAAGGGCAGGCAAAGAAGGGTATAACACTGAAGGGGAATCTGAAAGACTACACGGACCTCACCAATCCCTAGCTAAAGCAGCACATGGAGGCGGCCATCAACATTGGCGTGGATGATCTCAAAGCCAGGTTTGGTGGTTTGCTGAAGAATGAGGGTGTCCAGACCCCGGTGGAGACTTTCAGAGTGCTAAACCCTGACACATGGTCAGAAGACCGTTTCAATCAGTGTCGTCACtagctctgagaccttgaagtagtggttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgatgcttcgagggtgaatATTGAcatgtgcagagcgtccctggtacGCGCCCGGgtcgaggggacggactaaagttatactgtacatttacaTATTTGCAAACTCACTTGCTCTTTTAAATCCTACAGATCGGGGTGCAACATGGCTGCAATCCAGGATGAGTGGCAGGGGCTGAAAATCCTGGTCAGCCACAATTTCAAGGACAAGTCTTAGTGGCATGTGGGAGACAATGTTGACAAAGGACCCCTACAGGCACGATTACAAGAACATACTGGAGTTGGTGCAGCTTATGCTGGTGCTGCCCATTTCAGCCGCCCAGTGTGAGTGAGGCTTCTCTGCACAGAACCGGATTAAGATTGACAAGAAGCTGCCTTGGGGTCTCTACCACCGAAGACCTGATGAGGATCAGCCTGGGGGTCTTCTGTCGAGGAGTTGGATCCCACTCCTGCCGTGGACCGCTGGCTGACCTCTAAGCGTGCCAGACGGCCAACATACAAAAGCAGCTGGACAACTGATATCCTTTGCGTCTAGTAGCCATGAGTCAATGTGTGATTGGTGGTATGTGTCCCATGTGTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106609988

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034712.1 False 1348 mRNA 0.44 4 5976200 6002265
XR_005034713.1 False 1331 mRNA 0.48 4 5998930 6002265
XR_005034711.1 False 937 mRNA 0.50 2 6001222 6002265
TU123521 True 1923 TUCP 0.43 4 5999185 6002194
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110505637 LOC106573538 coding upstream 20755 5953886 ~ 5958813 (+)
LOC110505528 gmpr coding upstream 122026 5841517 ~ 5854355 (+)
mylipb LOC106596795 coding upstream 136554 5812247 ~ 5839646 (+)
jarid2a LOC106573577 coding upstream 222353 5615996 ~ 5753847 (+)
LOC110506279 LOC106595015 coding upstream 383947 5575366 ~ 5592253 (+)
setd2 LOC106593284 coding downstream 727 6002992 ~ 6049501 (+)
LOC118937376 NA coding downstream 89814 6092079 ~ 6093940 (+)
ccdc12 ccd12 coding downstream 229104 6231369 ~ 6250042 (+)
cep72 LOC106573558 coding downstream 284293 6286558 ~ 6312599 (+)
trip13 LOC106590995 coding downstream 376108 6378373 ~ 6389788 (+)
G108627 NA non-coding upstream 14075 5955703 ~ 5962125 (+)
G108648 NA non-coding upstream 27859 5947511 ~ 5948341 (+)
G108753 NA non-coding upstream 31209 5943752 ~ 5944991 (+)
G108752 NA non-coding upstream 34944 5941005 ~ 5941256 (+)
G108736 NA non-coding upstream 64264 5911688 ~ 5911936 (+)
G108789 NA non-coding downstream 80871 6083136 ~ 6085913 (+)
G108773 NA non-coding downstream 84911 6087176 ~ 6087617 (+)
G108779 LOC106573589 non-coding downstream 115572 6117837 ~ 6119044 (+)
G108799 NA non-coding downstream 131111 6133376 ~ 6134440 (+)
G108733 NA other upstream 75250 5900511 ~ 5900950 (+)
G108702 NA other upstream 193556 5780214 ~ 5782921 (+)
G108682 NA other upstream 250621 5719965 ~ 5725579 (+)
G108775 LOC106606109 other downstream 54731 6056996 ~ 6058335 (+)
G108805 LOC106594197 other downstream 194667 6151712 ~ 6199341 (+)
G108874 LOC106573552 other downstream 279806 6282071 ~ 6285940 (+)
G109020 NA other downstream 630813 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 853821 6855864 ~ 6868976 (+)
LOC118937375 NA coding upstream 19295 5978266 ~ 5979890 (+)
G108760 NA non-coding upstream 3059 5995802 ~ 5996126 (+)
G108758 NA non-coding upstream 5386 5993533 ~ 5993799 (+)
G108756 NA non-coding upstream 15414 5983276 ~ 5983771 (+)

Expression

LOC110505679(LOC106579367) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

LOC110505679(LOC106579367) Expression in each Bioproject

Bar chart with 21 bars.
LOC110505679(LOC106579367) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000196_00019403_00022470 NA coding CI01000196 null 19403 ~ 22483 (+)