ccdc12 (ccd12)


Basic Information

Item Value
gene id ccdc12
gene name ccd12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6231369 ~ 6250042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165046.1
ACGACAACACAGCGTGAAACAAAAATGGAGCAATCGGTTGGTTCACTGCAGGAACaagcattaaaaaggaaagaaagacTTAAAGCTTTGAGAGGTCGACAACTTCAAgtgagagatggagaggacggGGAACCAGACAGGAAGAGGGACCGGGCCGAGGAGGAAGCTGAAGAGGAGCGACACAGAGAGCTGAAGCTGAGGAACTACACCCCAGAGGATGAAGAGCTGAAGGAGAGACAGGTGCCCAAGGCCAAACCTGTTTCAGTGGAGGAGAAAGTGAAGGAGCAGCTAGATGCAGCGAAACCAGAGTCAGTCATCGAAGAAGTGGATTTGGCCAACCTAGCCCCCAGGAAGCCTGACTGGGATTTGAAACGAGACGTGGCGAAGAAGCTGGAGAAGCTTGAGAGGAGAACACAGAAGGCCATCGCTGAACTTATCCgtgatCGTCTGAAAGGCAGCGAGGAGGAGCTGGCTGGAGCTGTAGGAGCCATAGGGGTCACAGCAGAGGGGGACTCAGACTGACCCCTTAATCCAGAGACGCACCACGCGATCCTGGATCTGACCCTACCAATGTGTCGGTTCCTGTTCTGTTCAGCTGAATGTTTGTTGTGGGAATCGGAGGCTTTTGGTTTCTGTAGCTGTTAAAGCTATTGGGGAGTGAATATGCCAGTTAGATGTGTCACCTTGATGACTTCTGAACTCCAGTCCTAGTACGTGTCacaaatgacatcctattccctatatagatcaCTACTTTGACAAGTAGTGTGCTAgacagggagtagggtgccatttgggatgcagagccTGTGTGAAAGTCCGACCAGGCTTTGTCAGTGTAGTGCTAGCTAGAGGATCATTGGGGGCTGTTGTATACAGCTGTTGTAAGGATCATCT

Function

NR:

description
coiled-coil domain-containing protein 12-like

GO: NA

KEGG:

id description
K12871 CCDC12; coiled-coil domain-containing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165046.1 True 897 mRNA 0.51 7 6231369 6250042

Neighbor

gene id symbol gene type direction distance location
LOC118937376 NA coding upstream 137429 6092079 ~ 6093940 (+)
setd2 LOC106593284 coding upstream 181868 6002992 ~ 6049501 (+)
LOC110505679 LOC106579367 coding upstream 229104 5976200 ~ 6002265 (+)
LOC118937375 NA coding upstream 251479 5978266 ~ 5979890 (+)
LOC110505637 LOC106573538 coding upstream 275924 5953886 ~ 5958813 (+)
cep72 LOC106573558 coding downstream 36516 6286558 ~ 6312599 (+)
trip13 LOC106590995 coding downstream 128331 6378373 ~ 6389788 (+)
nkd2b LOC106574162 coding downstream 152634 6402676 ~ 6499698 (+)
zgc:158766 LOC106590969 coding downstream 295326 6545368 ~ 6629469 (+)
LOC118937387 NA coding downstream 369068 6619110 ~ 6621596 (+)
G108845 NA non-coding upstream 2016 6229118 ~ 6229353 (+)
G108844 NA non-coding upstream 2622 6228409 ~ 6228747 (+)
G108843 NA non-coding upstream 3183 6227700 ~ 6228186 (+)
G108836 NA non-coding upstream 14727 6215252 ~ 6216642 (+)
G108829 NA non-coding upstream 27253 6203773 ~ 6204116 (+)
G108861 NA non-coding downstream 15899 6265941 ~ 6266482 (+)
G108872 NA non-coding downstream 29219 6279261 ~ 6280039 (+)
G108876 NA non-coding downstream 31508 6281550 ~ 6281898 (+)
G108873 NA non-coding downstream 64557 6314599 ~ 6318260 (+)
G108887 NA non-coding downstream 81987 6332029 ~ 6333259 (+)
G108805 LOC106594197 other upstream 32028 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 173034 6056996 ~ 6058335 (+)
G108733 NA other upstream 330419 5900511 ~ 5900950 (+)
G108874 LOC106573552 other downstream 32029 6282071 ~ 6285940 (+)
G109020 NA other downstream 383036 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 606044 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 658505 6908511 ~ 6911256 (+)
LOC110535156 LOC106606167 other downstream 691474 6941465 ~ 6944043 (+)

Expression


Co-expression Network