trip13 (LOC106590995)


Basic Information

Item Value
gene id trip13
gene name LOC106590995
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6378373 ~ 6389788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936282.1
TTCAGGTTCAACAAAAAACTGCGCGCTAAATTCGAGTGTTGTTCAGTCGATTCCGTACCAAAACGAAGCTATGGAGGGCGACAGAATGGAGGTAGGGGATCTGAAGCAGAACCCCAACGACACGAACAACATCCATGTGGAGGTTCACGTCAAATCTACCAGCACTGCCAAGAGGTCTGACGTGAAGATGCACGTCTTGACCCTGCTGAACCGTCATCGGATGGTGTTCGGGGCCTTCAGGTGGACAGAGTTTGACGAAGACTTCCTTATCAAACACGTCCAATCAGTGGCCATAGTGGACGCTGAGAGAAAACCCATAGATCTGAAGAGCTGCAGTCTGTCCATCCACATCTTCACCCTGAATGATGACGGGCCCAGCACTCTgaacctggaggaggaggaggagctctCTGCAGCCAATCACTGGCTCTTACCAGCCGcTGAGTTCCATGgcatctgggagagtctggtctaTGAGAGCAGGGTCAAAACACAACTCTTGGATTACGTCTCAACCACAATTTACTTCTCTGACAAAAACGTGGACAGCAACCTGATCTCATGGAACCGAGTTGTTCTGCTTCATGGACCCCCGGGCACAGGGAAGACGTCTTTGTGTAAAGCTCTGGCCCAGAAGCTGTCAATCCGACTTTCGAACCGGTACTCTTACGGGCAGTTTGTTGAGATCAACAGCCACAGTTTGTTCTCCAAGTGGTTCTCTGAGAGTGGGAAACTGGTCACTAAGATGTTCCAGAAGATCCAACAGCTGATAGATGACAAGCAGGCTCTGGTGTTTGTTCTCATTGATGAGGTGGAGAGTCTAACGGCAGCGCGGAAAGCCTCCCAGGCCGGAACGGAACCCTCAGACGCCATCCGAGTGGTCAACTCTGTCCTCACACAGCTGGACCAGATCAAGCGGCATCCTAATGTTGTGATCCTGACCACCTCCAACGTGACAGAGAAGATAGACCTGGCGTTTGTGGACAGAGCTGACATCAAGCAGTACATTGGCCCTCCGTCTGTAGAGGGCATCTTCAACATCTATCTGTCCTGCCTGGAGGAACTGATGAAGTGCCAGATCGTGTACCCCAGACAGCCACTGCTGACCATGTTTGAGCTGGAGACCATGGGCTTCAGGGAGAGCAAGGTGTCGGAGCTCAGCCTGGTTCTCAGGGACATCGCCATAAAGAGTAAAGGTTTTAGTGGCAGAGCGCTGAGGAAACTACCCTTTTTGGCCCATGCTCTTTTTGTGAAGACTCCGACAGTGGCCCTGGAGAGGTTCCTGGAGGCCATGGACCTGGCAGTGGACAaacagatagaggagagggacaaCCTGGTCAACTGTCTGTGATCTACAGGGACACTGTCTCAAATAGCTCCCTATACCCTTTATAGTGTCtgtagggatctggtcaaaaagtagtgcgctaaatatggaatagggtgctatttgggacttgTCTCAGACAGTCTGGACCTGTTTTACCCAACGGTTGATGGAAACGGTCTCTTCTGGTATTTCATGTACATTTTatttcctggttaaataatatACATTTTATAATCATATTTTTCTAACCACTCAACGTGGACCAATTTAGTTTTCTCACAGACAGTGTGTTTTACCATTTAGAGTACTATATTAAAGATGGCAGCCGTCAACCAGTCGGTCATGTTCTGTGGAGACTTCCTGAAGCTTGTGTTGCTACTGCCAAGCGTCATCAACGTTAGGTGCGTTCTCAGCACGTTTTAAAAAGCTACCGTATTAAGACTGAGATGCAGTCCTCTCTTGATACGTGTGACTATAACGGCTTTAATTTCCTAACCCAAGACGGtgtgtcccgaatggcaccctatgcaTTGCACTACTTTGGGCCGGGACCCATAGGTCTATGGTCAagcgtagtgcactatatgaggGAATTAGGGTGCGATATGTTGTTTACAGCACATGTATTCATtactctgtctgcttgtctgatGTTTTCTATGTGAGCTTGCTGTTTCCTATACGTTTCAATAGGTGCTATTAGAAACACAGCCTTTCTGCTATTGTAAATGAATGCAAATGCCCCAAATAGGAGCTCTTCAATGGAAATGTACAAATTCTGATTTAATTTCTAATCCCGTGGATGTTTTTTTTTGATACTCCAGGATGTTCCATGTATTGTGTGCTGCCATCATATGGTCTCTTCATTTAAACTCAGGATACACATGTTCATAACTGACcttgtttatttatatataaaacacatgGGATTATTCAACTCTTTAAAACACCCTTTGACTCATTTTGAGTTTGTCAAATACACTGCCCACATGATAGACATGTGATTTCATCATGATTGGCTAACAggtcgtattcattagtgcacactgtagcaaaacgttttgcaacggaagCGTTATCCCCCAAGTGCTCTAATCTACAATGTGATGTCAaagattctgttgcaaaacgtttttttttggTGCACTAATGAATATAACCCTCTTGTTTCTGAATGAGCCCAGACCTGCCTTCCTCCTGATGAATACAAGCCCAGATTCCCcccagggtgaaattcccctttaaaGTGTGAAGGGGGAAAATGTGTCTTGTAGAACCCAATGCCCAGTGGTGTTTGACCACTGGGTGGCGGAATATCACAGTTCTCCTCCAACCCTGTAATGAACTTTAATGTCTTCCTGTTTGCTCTGTAACTGATATCTAACATCTATATACCTTTATTAACATGGGGCCATAGCTCTGCAGAAATTCAACAAGGAGAATTTCAATTAAACCGACTACTGATCATTTGAACACAAA
>XM_036936288.1
TTCAGGTTCAACAAAAAACTGCGCGCTAAATTCGAGTGTTGTTCAGTCGATTCCGTACCAAAACGAAGCTATGGAGGGCGACAGAATGGAGGTAGGGGATCTGAAGCAGAACCCCAACGACACGAACAACATCCATGTGGAGCACTGCCAAGAGGTCTGACGTGAAGATGCACGTCTTGACCCTGCTGAACCGTCATCGGATGGTGTTCGGGGCCTTCAGGTGGACAGAGTTTGACGAAGACTTCCTTATCAAACACGTCCAATCAGTGGCCATAGTGGACGCTGAGAGAAAACCCATAGATCTGAAGAGCTGCAGTCTGTCCATCCACATCTTCACCCTGAATGATGACGGGCCCAGCACTCTgaacctggaggaggaggaggagctctCTGCAGCCAATCACTGGCTCTTACCAGCCGcTGAGTTCCATGgcatctgggagagtctggtctaTGAGAGCAGGGTCAAAACACAACTCTTGGATTACGTCTCAACCACAATTTACTTCTCTGACAAAAACGTGGACAGCAACCTGATCTCATGGAACCGAGTTGTTCTGCTTCATGGACCCCCGGGCACAGGGAAGACGTCTTTGTGTAAAGCTCTGGCCCAGAAGCTGTCAATCCGACTTTCGAACCGGTACTCTTACGGGCAGTTTGTTGAGATCAACAGCCACAGTTTGTTCTCCAAGTGGTTCTCTGAGAGTGGGAAACTGGTCACTAAGATGTTCCAGAAGATCCAACAGCTGATAGATGACAAGCAGGCTCTGGTGTTTGTTCTCATTGATGAGGTGGAGAGTCTAACGGCAGCGCGGAAAGCCTCCCAGGCCGGAACGGAACCCTCAGACGCCATCCGAGTGGTCAACTCTGTCCTCACACAGCTGGACCAGATCAAGCGGCATCCTAATGTTGTGATCCTGACCACCTCCAACGTGACAGAGAAGATAGACCTGGCGTTTGTGGACAGAGCTGACATCAAGCAGTACATTGGCCCTCCGTCTGTAGAGGGCATCTTCAACATCTATCTGTCCTGCCTGGAGGAACTGATGAAGTGCCAGATCGTGTACCCCAGACAGCCACTGCTGACCATGTTTGAGCTGGAGACCATGGGCTTCAGGGAGAGCAAGGTGTCGGAGCTCAGCCTGGTTCTCAGGGACATCGCCATAAAGAGTAAAGGTTTTAGTGGCAGAGCGCTGAGGAAACTACCCTTTTTGGCCCATGCTCTTTTTGTGAAGACTCCGACAGTGGCCCTGGAGAGGTTCCTGGAGGCCATGGACCTGGCAGTGGACAaacagatagaggagagggacaaCCTGGTCAACTGTCTGTGATCTACAGGGACACTGTCTCAAATAGCTCCCTATACCCTTTATAGTGTCtgtagggatctggtcaaaaagtagtgcgctaaatatggaatagggtgctatttgggacttgTCTCAGACAGTCTGGACCTGTTTTACCCAACGGTTGATGGAAACGGTCTCTTCTGGTATTTCATGTACATTTTatttcctggttaaataatatACATTTTATAATCATATTTTTCTAACCACTCAACGTGGACCAATTTAGTTTTCTCACAGACAGTGTGTTTTACCATTTAGAGTACTATATTAAAGATGGCAGCCGTCAACCAGTCGGTCATGTTCTGTGGAGACTTCCTGAAGCTTGTGTTGCTACTGCCAAGCGTCATCAACGTTAGGTGCGTTCTCAGCACGTTTTAAAAAGCTACCGTATTAAGACTGAGATGCAGTCCTCTCTTGATACGTGTGACTATAACGGCTTTAATTTCCTAACCCAAGACGGtgtgtcccgaatggcaccctatgcaTTGCACTACTTTGGGCCGGGACCCATAGGTCTATGGTCAagcgtagtgcactatatgaggGAATTAGGGTGCGATATGTTGTTTACAGCACATGTATTCATtactctgtctgcttgtctgatGTTTTCTATGTGAGCTTGCTGTTTCCTATACGTTTCAATAGGTGCTATTAGAAACACAGCCTTTCTGCTATTGTAAATGAATGCAAATGCCCCAAATAGGAGCTCTTCAATGGAAATGTACAAATTCTGATTTAATTTCTAATCCCGTGGATGTTTTTTTTTGATACTCCAGGATGTTCCATGTATTGTGTGCTGCCATCATATGGTCTCTTCATTTAAACTCAGGATACACATGTTCATAACTGACcttgtttatttatatataaaacacatgGGATTATTCAACTCTTTAAAACACCCTTTGACTCATTTTGAGTTTGTCAAATACACTGCCCACATGATAGACATGTGATTTCATCATGATTGGCTAACAggtcgtattcattagtgcacactgtagcaaaacgttttgcaacggaagCGTTATCCCCCAAGTGCTCTAATCTACAATGTGATGTCAaagattctgttgcaaaacgtttttttttggTGCACTAATGAATATAACCCTCTTGTTTCTGAATGAGCCCAGACCTGCCTTCCTCCTGATGAATACAAGCCCAGATTCCCcccagggtgaaattcccctttaaaGTGTGAAGGGGGAAAATGTGTCTTGTAGAACCCAATGCCCAGTGGTGTTTGACCACTGGGTGGCGGAATATCACAGTTCTCCTCCAACCCTGTAATGAACTTTAATGTCTTCCTGTTTGCTCTGTAACTGATATCTAACATCTATATACCTTTATTAACATGGGGCCATAGCTCTGCAGAAATTCAACAAGGAGAATTTCAATTAAACCGACTACTGATCATTTGAACACAAA

Function

NR:

description
pachytene checkpoint protein 2 homolog

GO: NA

KEGG:

id description
K22399 TRIP13; pachytene checkpoint protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936282.1 False 2809 mRNA 0.46 14 6378373 6389788
XM_036936288.1 True 2789 mRNA 0.46 14 6378373 6389788

Neighbor

gene id symbol gene type direction distance location
cep72 LOC106573558 coding upstream 65774 6286558 ~ 6312599 (+)
ccdc12 ccd12 coding upstream 128331 6231369 ~ 6250042 (+)
LOC118937376 NA coding upstream 284433 6092079 ~ 6093940 (+)
setd2 LOC106593284 coding upstream 328872 6002992 ~ 6049501 (+)
LOC110505679 LOC106579367 coding upstream 376108 5976200 ~ 6002265 (+)
nkd2b LOC106574162 coding downstream 12888 6402676 ~ 6499698 (+)
zgc:158766 LOC106590969 coding downstream 155580 6545368 ~ 6629469 (+)
LOC118937387 NA coding downstream 229322 6619110 ~ 6621596 (+)
LOC110505995 LOC106573077 coding downstream 255428 6645216 ~ 6649794 (+)
ptdss1a LOC106595791 coding downstream 263414 6653202 ~ 6684816 (+)
G108897 NA non-coding upstream 13584 6362904 ~ 6364789 (+)
G108888 NA non-coding upstream 33850 6334097 ~ 6344523 (+)
G108887 NA non-coding upstream 45114 6332029 ~ 6333259 (+)
G108873 NA non-coding upstream 60113 6314599 ~ 6318260 (+)
G108876 NA non-coding upstream 96475 6281550 ~ 6281898 (+)
G108943 NA non-coding downstream 44249 6434037 ~ 6436005 (+)
G108951 NA non-coding downstream 74968 6464756 ~ 6471975 (+)
G108991 NA non-coding downstream 166253 6556041 ~ 6623583 (+)
G108994 NA non-coding downstream 169107 6558895 ~ 6559507 (+)
G109003 NA non-coding downstream 181830 6571618 ~ 6572130 (+)
G108874 LOC106573552 other upstream 92433 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 179032 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 320038 6056996 ~ 6058335 (+)
LOC110505637 LOC106573538 other upstream 419560 5953886 ~ 5958813 (+)
G109020 NA other downstream 243290 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 466298 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 518759 6908511 ~ 6911256 (+)
LOC110535156 LOC106606167 other downstream 551728 6941465 ~ 6944043 (+)
G109821 NA other downstream 745459 7135247 ~ 7140979 (+)

Expression


Co-expression Network