nkd2b (LOC106574162)


Basic Information

Item Value
gene id nkd2b
gene name LOC106574162
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6402676 ~ 6499698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936297.1
CTACAGCCATGCCTACTACTTAGATTGAGTTGAGCGCCTCCTGCTCTGCGCTACGCTACCGCCAGACGGACACACAttcttccattcagtcagtcagttggCTTGTCTGACGCTAAAGTGCAAGTCGACTATAGTCTCCCTTCTCTCGGGATTTGTTTTGAGAGAAAGAGCGTTGTTTCTGTACAGCAAAATAAAACATGTGTGTATATTGGTTATTTTGAATGCGCTTGGAGAAAGTTAAATTGGACTATTTTCTTGCAAAAACGTGGACACAATGTGACAATGTTGACCAGCAGACTGGGTTATCCATGACGGATTGGTAAAGAGCTGTTCATTAATCAAGGAAAAAGGGACGTGGAAATGGGGAAACTTCAGTCCAAACATGCGGGCAAACGTAGAGAGAACCCCGAAGGAGACAGTTTTGTTGTGAACGCTTTCCTCCGAAGAGCGATGGAGGAATGTGAGATATACAGCTCCTCAGatcacaaactgaacaacatTCAGGAGTTTCCACATAGTGAGCTGAAGGGGAGACAGCTCTTAGACCATCACTGTCCCCTAGAGGTGGATCTCCCTCCAGAGAAGGCTGCTGAGGGCTGTGACAGTTACCTGCAGTCCCCCCACACAGACCCAGGGCCAGACAGGCAGTTACTGAGAGGAGGGGACGCAGGCAAAGCCTCTGGGAAGAAACGCATCAGCCTGGATGACCTAGAGTGTGACGTATCAGTGGAGGAAGATAATCGTCAGGAATGGATCTTCACCCTCTATGATTTTGACAACAGTGGCAAAGTTACTAAAGAGgaCATGTCCAGTCTGATGCACACCATCTATGATGTGGTGGATGCCTCGGTCAATCACTCGTCCTGCCACAGTAAGAGGAAGACCCTACGGGTCAAACTGACCGTCGCACCAGAGCCCAGTGCTCGCAGGAGAGACCACATCTCCACTGGACCAGACCGGGAGTCAGGACGCCTTCACCAGGAGGAGGGACGATCAGCAGACAGACGGCTTTCTTCTCACATCAGGCCAGCCCTCCCAGGTCAGAGCAGTGAGGGACAGCATTACTGTGTGGATGAGAACACTGAGAGGAGGAATCACTATCTGGACCTAGCTGGTATAGAGAACTACACCTCCAGGTTTGAAGgaTCCACCCCTCCCCCGCCCCCCCAGGAGACCCATGTGCGGGCCTCCCAGTCCCAGAACCGCTCCCGTTCCCAGGAGCCCGAGGCCCACGCCGCCCACGCCCACCAGCGCCGCTCGCAGGTCATCAGTGAGAACTACACCCCTCTAGAAGCCCGGGGTCGGGGCGCGTCACACTTCCTCAAGTCCCCCAGAGGAACATCTAAAGGATCCGGCGTCGGAGGGACCCCTGGGGGACTTGAAAGGGCCAAGTCCAGTAAATACCACGCTGGGGGTCATTACCCTCCtcagcctcctcctctccagaccATGCTGCATACAGGGACCTCCTCATCTGGGGGTCACGGAGGTCAGGATgtgtaccacctcccctcctccagcCACCACCAGCACCCTCTGCAGCACAGCCACAGCAAACGGCTCCGGGCCAAAGCCAGGGAGGGTCAGGGCCTGTCCCCGTCCAAAACACCCCTGTCACCTCACTCCAATCCCCAGCATCAGCATCAGGCTCCCCCTCCTCCTTGTCTGGAGAGGGAGCAGGGGTCTGGGCTGCCTGGCAGCCCTGGGTCCTTTGTGTTGCCTCTGGTGCAGCGTCACGAGCACCGACACCACCACgaacaccaccatcaccaccactaccaccaccaccaccagacatGACCCAATAGGACGCCAGTCACAGTAACAGTCAGAGACTGAGAGACCTTTAAAGGACCGACTGACCACACCCGTCTGTCTGAAGAAGGACTCAACCTCCTCACCCAATGGGAATGTCTCCGCTTCTGTCCTGAGGCTGCCCAATCtgagatggcaccctattccctatatagtgcaccacttttgaccagagccctattggttagccctaactctaaccctgtagaCGTTtgccaaatgtagtgcactatataacaAGGTGCCATTCAGACAGCCCAGGATCTGAACCCTCCTCCATTTTGTGCCAGGCAGGCTGCCAGAGCCAGACAGTTTCCCTGAGATATCCTGGGATCAGACACACTGATGGAAACTGGAATGTGGCTGACTTGACTGCTGTGGTTATTCCATTGTAAAGGGTTGCTGAAGACACGGTGGTGCAGTTTTGTAAGACGTTTTCTATGGCACAGTTCTGAATCTGAATCAAATGAGGTTAAACGTCCTGCTGGACCAAGCTACTCCTCTCTACGCGTGGACCTTCACAAAGGGAGAACAGATACAGTACAGCTCTATGtggacagaggtcagaggtcatcatTTCCTCCTTGGTGTTGACCCATAGATTTTCTTGTCCCCAGAAGCTAGGTACTGTCTCCTtcgtcccaaatgacacactattccaTTTCATAGTATACaacctttgaccagggctcataggactctagtctaaagtagtgcactatttagggaatagcgTGACATTTGGGACACTGCCTCTCCGTGTGTCTTGTGTGTACGAGAGCTTTCCTCCCAACGGTGTATCTCAGGTGTTAGGTGCTGCTCCTtagctgttctctctactacttccTCATTGGAACCGGAACCCTGCTGTTGGGGTTCCAGAACCAGAGGAACAATATCAAATCACCACTGACAGTTTTAATGCAAGAATTATCTAGCTATGTAAGCTTTCACATCTATATATGTATACACATTTTACTGTAATAATACTGTATTTATATGCATGTTATTTCATCATGAATTATAATAATGCATAAATGTCTTTTGTCGTTGATGTATTTTAATAaacattatatatactgta

Function

NR:

description
protein naked cuticle homolog 2-like

GO: NA

KEGG:

id description
K03213 NKD; naked cuticle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936297.1 True 2899 mRNA 0.51 10 6402676 6499698

Neighbor

gene id symbol gene type direction distance location
trip13 LOC106590995 coding upstream 12888 6378373 ~ 6389788 (+)
cep72 LOC106573558 coding upstream 90077 6286558 ~ 6312599 (+)
ccdc12 ccd12 coding upstream 152634 6231369 ~ 6250042 (+)
LOC118937376 NA coding upstream 308736 6092079 ~ 6093940 (+)
setd2 LOC106593284 coding upstream 353175 6002992 ~ 6049501 (+)
zgc:158766 LOC106590969 coding downstream 45670 6545368 ~ 6629469 (+)
LOC118937387 NA coding downstream 119412 6619110 ~ 6621596 (+)
LOC110505995 LOC106573077 coding downstream 145518 6645216 ~ 6649794 (+)
ptdss1a LOC106595791 coding downstream 153504 6653202 ~ 6684816 (+)
LOC110505984 LOC106574154 coding downstream 186202 6685900 ~ 6688012 (+)
G108911 NA non-coding upstream 15956 6386330 ~ 6386720 (+)
G108897 NA non-coding upstream 37887 6362904 ~ 6364789 (+)
G108888 NA non-coding upstream 58153 6334097 ~ 6344523 (+)
G108887 NA non-coding upstream 69417 6332029 ~ 6333259 (+)
G108873 NA non-coding upstream 84416 6314599 ~ 6318260 (+)
G108991 NA non-coding downstream 56343 6556041 ~ 6623583 (+)
G108994 NA non-coding downstream 59197 6558895 ~ 6559507 (+)
G109003 NA non-coding downstream 71920 6571618 ~ 6572130 (+)
G109011 NA non-coding downstream 88466 6588164 ~ 6588628 (+)
G109015 NA non-coding downstream 99225 6598923 ~ 6600166 (+)
G108874 LOC106573552 other upstream 116736 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 203335 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 344341 6056996 ~ 6058335 (+)
LOC110505679 LOC106579367 other upstream 400482 5976200 ~ 6002265 (+)
LOC110505637 LOC106573538 other upstream 443863 5953886 ~ 5958813 (+)
G109020 NA other downstream 133380 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 356388 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 408849 6908511 ~ 6911256 (+)
LOC110535156 LOC106606167 other downstream 441818 6941465 ~ 6944043 (+)
G109821 NA other downstream 635549 7135247 ~ 7140979 (+)

Expression


Co-expression Network