LOC110505995 (LOC106573077)


Basic Information

Item Value
gene id LOC110505995
gene name LOC106573077
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6645216 ~ 6649794 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936327.1
tctctctctctctctctctctctgtgcatgtgTATGAAAATGTCTTTGTCCATCACTTACCAGACCAGCGCAGACGCCCTCCAAGTGTGACTTCCTCCATAAAGTTAGAAACGAACAGCGGCAGGTAAATGAAGTACACATTTCAGTCAGATGAGTGCATGGTCATCACTATACCTCTGGGCAGTCTCAGAAATGCTCCGGAGGGCCAGCTGATGCCTGAGAACTTCCACTGTGTCTTCAAAGATGTCTATAAGGTCTTCCTCAAGGGTCAGCCTAAAGCTCTGGGGGCGGCTCAGCTCATTGCTGGAGTCCTTGTCTTGATTCTGGGGCTACTGTTTGTCCAGCACAGCCCATTAGTTCTGATCTACACCATGCCCAGTGTCCTGTTTGTTGCTGCCGGAATGCTGACCTATGCTGCAGGTCATTCTCCAAGTATGTGTGTGACCAAACTGTCATTTTCCTTGAACATTGTCAGCTGTTTCTGGACAGTAGCTGCTGTTGTTCTCTGCACTCTCCATGCCTCTCATGGTTTCTACGGGGACCATCAAGAGGTATTTTCTGGTATCAAATGGATAATTGTGGTTCCCCTGGTCATTGAACTGGTTGTTGCCATGGTGGCGATCTACTGGGAGAGTAAAGCAGTGTGCAGACAGCACTTCAACATTCTGCCCATGGTCACCCTGAAGCAAGAGGTATGAACCTGAAGGACTGGCAGCAAACAACAAATAACTAAGTGAAATAATGAATCATCTTGTATGccatttgttttacttgtgccAATTCACAAGTCACAATttacggacctcccggtcgcggccggtttacaacagagcctgggcgcgaacccaggctctctggtggcacagctggcgctgcagtacagcgcccttaaccactgcgccacccgggaaaATAGTGATATTTTGACACTGTCTCAAAAGTGCAAATAAGGAAATGAAATACAGAATATAATTTAGAAATACGGGGTTCTTCTACTGAGAAATAGTAATAAcgttgcatacatttttttgtagcAGTTTGTCAAAGAGAAAGCTAATTATCATGACAGATGTTTTACTTACAATTGCATTAtgcaatatgacatttgaaaatgTTGGTTATATTTTAATCTGACTTGTATCTGATTTAAATGAATTTAAACAT
>XM_036936317.1
TAATGTTACATTACAGTGTCCTCATCACATCAGTAGTGTTATTGTCTACATGATGTGTTAATAAAGGGAAAGTTCATATTCATcgtctccagcaccaccccaacatcaacatatgtgaaaatggtgcGTTTCTATGTTCTGTAGTAAAAAAATATAGAGGAATAtatgtgtttccaatgacatcatcattgtGCATCGTGTGATTTTGACCAGTTGTGAGGAGGCATTGCCTACTAATTACCTATTAATGGTTGACTAATTATGTCATTGGAAGCACGTGTCTTCCTCTATATTCACTAAagtagtttttattttatttttctcccttTTAATGAAATGTATTGTTCCCAGGTAAATGAAGTACACATTTCAGTCAGATGAGTGCATGGTCATCACTATACCTCTGGGCAGTCTCAGAAATGCTCCGGAGGGCCAGCTGATGCCTGAGAACTTCCACTGTGTCTTCAAAGATGTCTATAAGGTCTTCCTCAAGGGTCAGCCTAAAGCTCTGGGGGCGGCTCAGCTCATTGCTGGAGTCCTTGTCTTGATTCTGGGGCTACTGTTTGTCCAGCACAGCCCATTAGTTCTGATCTACACCATGCCCAGTGTCCTGTTTGTTGCTGCCGGAATGCTGACCTATGCTGCAGGTCATTCTCCAAGTATGTGTGTGACCAAACTGTCATTTTCCTTGAACATTGTCAGCTGTTTCTGGACAGTAGCTGCTGTTGTTCTCTGCACTCTCCATGCCTCTCATGGTTTCTACGGGGACCATCAAGAGGTATTTTCTGGTATCAAATGGATAATTGTGGTTCCCCTGGTCATTGAACTGGTTGTTGCCATGGTGGCGATCTACTGGGAGAGTAAAGCAGTGTGCAGACAGCACTTCAACATTCTGCCCATGGTCACCCTGAAGCAAGAGGTATGAACCTGAAGGACTGGCAGCAAACAACAAATAACTAAGTGAAATAATGAATCATCTTGTATGccatttgttttacttgtgccAATTCACAAGTCACAATttacggacctcccggtcgcggccggtttacaacagagcctgggcgcgaacccaggctctctggtggcacagctggcgctgcagtacagcgcccttaaccactgcgccacccgggaaaATAGTGATATTTTGACACTGTCTCAAAAGTGCAAATAAGGAAATGAAATACAGAATATAATTTAGAAATACGGGGTTCTTCTACTGAGAAATAGTAATAAcgttgcatacatttttttgtagcAGTTTGTCAAAGAGAAAGCTAATTATCATGACAGATGTTTTACTTACAATTGCATTAtgcaatatgacatttgaaaatgTTGGTTATATTTTAATCTGACTTGTATCTGATTTAAATGAATTTAAACAT
>TU124074
GTTACTATTCTCTTTGTCAGGTATTTTCTGGTATCAAATGGATAATTGTGGTTCCCCTGGTCATTGAACTGGTTGTTGCCATGGTGGCGATCTACTGGGAGAGTAAAGCAGTGTGCAGACAGCACTTCAACATTCTGGTGAGACTCTGTTTATTATACTGACTGGGCTGAACATTCTGGTGAGACTCTACTGTTTATTATACTGACTGGGCTGAACATTCTGGTGAGACTCTACTGTTTATTATACTGACTGGGCTGAACATTCTGGTGAGACTCTACTGTTTATTATACTGACTGGGCTGAACATTCTGGTGAGACTCTACTGTTTATTATACTGACTGGGATGAACATTCTGGTGAGACTCTACTGTTTATTATACTGACTGGGATGAACATTCTGGTGAGACTCTACTGTTTATTATACTGACTGGGATGAACATTCATGTGAGACTCTACTGTTTATTATACTGACTGGGATGAACATTCATG

Function

NR:

description
membrane-spanning 4-domains subfamily A member 4D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936327.1 False 1164 mRNA 0.45 7 6645216 6649794
XM_036936317.1 False 1391 mRNA 0.42 6 6645480 6649794
TU124074 True 487 lncRNA 0.41 3 6647043 6649067

Neighbor

gene id symbol gene type direction distance location
zgc:158766 LOC106590969 coding upstream 15747 6545368 ~ 6629469 (+)
LOC118937387 NA coding upstream 23620 6619110 ~ 6621596 (+)
nkd2b LOC106574162 coding upstream 145518 6402676 ~ 6499698 (+)
trip13 LOC106590995 coding upstream 255428 6378373 ~ 6389788 (+)
cep72 LOC106573558 coding upstream 332617 6286558 ~ 6312599 (+)
ptdss1a LOC106595791 coding downstream 3408 6653202 ~ 6684816 (+)
LOC110505984 LOC106574154 coding downstream 36106 6685900 ~ 6688012 (+)
kif13a kif13a coding downstream 39097 6688891 ~ 6839464 (+)
LOC110506079 NA coding downstream 191238 6841032 ~ 6842093 (+)
rbm24b LOC106596654 coding downstream 206070 6855864 ~ 6868976 (+)
G109019 NA non-coding upstream 19203 6624956 ~ 6626013 (+)
G109018 NA non-coding upstream 21005 6623670 ~ 6624211 (+)
G108991 NA non-coding upstream 21633 6556041 ~ 6623583 (+)
G109015 NA non-coding upstream 45050 6598923 ~ 6600166 (+)
G109011 NA non-coding upstream 56588 6588164 ~ 6588628 (+)
G109030 NA non-coding downstream 13475 6663269 ~ 6664730 (+)
G109032 NA non-coding downstream 20904 6670698 ~ 6672100 (+)
G108930 NA non-coding downstream 59330 6709124 ~ 6753929 (+)
G108934 NA non-coding downstream 142217 6792011 ~ 6793179 (+)
G109072 NA non-coding downstream 163000 6812794 ~ 6813416 (+)
G109020 NA other upstream 11303 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 359276 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 445875 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 586881 6056996 ~ 6058335 (+)
LOC110505679 LOC106579367 other upstream 643022 5976200 ~ 6002265 (+)
malsu1 malsu1 other downstream 258753 6908511 ~ 6911256 (+)
LOC110535156 LOC106606167 other downstream 291722 6941465 ~ 6944043 (+)
G109821 NA other downstream 485453 7135247 ~ 7140979 (+)
pde11al LOC106573285 other downstream 653234 7282430 ~ 7304709 (+)
G109003 NA non-coding upstream 74913 6571618 ~ 6572130 (+)

Expression


Co-expression Network