LOC110506079



Basic Information


Item Value
gene id LOC110506079
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6841032 ~ 6842093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_002470929.2
tcaactccttgtagagtcaacatgggccagcatccctgtggaacgctttcaactccttgtagagtcaacatgggccagcatccctgtggaacgctttcaacttCATGCCCTGAGTTCATGCCCTGAGAAtgtaggctgttctgagggcaaaaggaggtgcaactcaatattagtaaggtgttcttaatgttttgtacactcagtgtgtactATAATGCATTGTGCCTCTCAAGGGGGTGGAAACTGAGGCTAGACTGGGCCTGACTGAAGGCTGGCTGGCCTGATGCATTATGACCTGAAGCTCACAGGCATTTACAATGCCCTCCACCAATCCCCTGGACTGTTACTGTTAGGTTGAATGCCCTCCACCAATCCCCTGGACTGTTACTGTTAGGTTGAATGCCCTCCACCAATCCCCTGGACTGTTACTGTTAGGTTGAATGACTAACGATGAACCCTACCTACAGTGATTTGCTCTGACAGCATTTTCTATGTTATTTTGACTAATGAGTAACATTTAAGTATTTTTTTAGAGATACTCATGTCAACAAATGAATTTAGTTTATTTTACAGGGAGAGGTGTATGAACAGGGGATGGACACTATGAGGAaatgggaggggagagatgaTGTCAAATAGTTTTATAACCTGAATGATGAACCATGTCTCTgacattttgtattttattgGAGCTGTGGATgtggctagctctggtccagggggTTAGTGCATTCCTCGCtgacgccctggaccagagctagttgtGGCTAACTGTGGTGGAGAGAAATAGAATTTTAAAATGCTGTAATTTCAAGTAAATAAGAAAAGAAACCCAAGACCTTACTTTAAAGACAAGATCAAAGCTGCTCTCCCTAATGAGGAGTTGTACATATACATGTATTTGAACATAGTATTATTTGcaatattataatgtacagaATTGTATTTATAATGTATCTCAACAAACTGTTTTAATTGGTACAAAGATGTTCTAGAATACAGAACGTTTACAATCTAAaca

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_002470929.2 True 1021 mRNA 0.41 2 6841032 6842093

Neighbor


gene id symbol gene type direction distance location
kif13a kif13a coding upstream 1568 6688891 ~ 6839464 (+)
LOC110505984 LOC106574154 coding upstream 153020 6685900 ~ 6688012 (+)
ptdss1a LOC106595791 coding upstream 156216 6653202 ~ 6684816 (+)
LOC110505995 LOC106573077 coding upstream 191238 6645216 ~ 6649794 (+)
zgc:158766 LOC106590969 coding upstream 211563 6545368 ~ 6629469 (+)
rbm24b LOC106596654 coding downstream 13771 6855864 ~ 6868976 (+)
grinab grina coding downstream 33894 6875987 ~ 6889713 (+)
LOC118937417 LOC106592634 coding downstream 49355 6891448 ~ 6896287 (+)
smpd5 LOC106577403 coding downstream 55405 6897498 ~ 6908200 (+)
malsu1 malsu1 coding downstream 66418 6908511 ~ 6911256 (+)
G109072 NA non-coding upstream 27616 6812794 ~ 6813416 (+)
G108934 NA non-coding upstream 47853 6792011 ~ 6793179 (+)
G108930 NA non-coding upstream 87103 6709124 ~ 6753929 (+)
G109032 NA non-coding upstream 168932 6670698 ~ 6672100 (+)
G109030 NA non-coding upstream 176302 6663269 ~ 6664730 (+)
G109080 NA non-coding downstream 1783 6843876 ~ 6844930 (+)
G109070 NA non-coding downstream 17579 6859672 ~ 6863903 (+)
G109085 NA non-coding downstream 21970 6864063 ~ 6864303 (+)
G109069 NA non-coding downstream 27507 6869600 ~ 6870945 (+)
G109088 NA non-coding downstream 29418 6871511 ~ 6871727 (+)
G109020 NA other upstream 207119 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 555092 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 641691 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 782697 6056996 ~ 6058335 (+)
LOC110505679 LOC106579367 other upstream 838838 5976200 ~ 6002265 (+)
LOC110535156 LOC106606167 other downstream 99423 6941465 ~ 6944043 (+)
G109821 NA other downstream 293154 7135247 ~ 7140979 (+)
pde11al LOC106573285 other downstream 460935 7282430 ~ 7304709 (+)

Expression



Co-expression Network