grinab (grina)


Basic Information

Item Value
gene id grinab
gene name grina
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6875987 ~ 6889713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936461.1
GCCACGTAAGGAATAATCGCGCCATCTGATGGCAGCAGGGCTGAAACAGCGTGACACAGTTCATTCGAGAAATGACGTACCTCACAAGGGGCGCGCATGACCTTTTGGACTGAAATATGTAACGCAGGACTTAGCGGAACAAATATCGCCTACCGAAAAGGAAAGTAAGTTTCTTCTAGCTGTTCAGGTGACTATCTTTCAAACTGGGAGCAACTTGGAAAACGCTTACGGAAAACTGTCAAACTTCATCGACGGAGAATACCGtgccCTGTTTCTACAGTCCAGACCAGATCAACACTTCTTGAACCCCTGTCCCAGTGAGAGGAACAGACCTAGTGATGTCCCAACCTGACAGGAATATCTATTCTTCATTGGAGGGGGGCATCCAGCCCCCAAATGTAGGCTTTGGGCAGCCAAGCCCACCAGGATATGGGATGACCTTACCCAACACGCAGGGAATGTCGAACCCATTTGGGGGGCCAGGGCCTGCTCCAGGGGGGATGCCCTTCCCCACGCCTGGGGCATTTGGTCAGCCCATGTACTCCCAGGGTCAGGGGAACCCAGGATATGGGATGACCTTACCCAACACGCAGGGAATGTCGAACCCATTTGGGGGGCCAGGAACTTCTCCAGGGGGGATGCCCTTCCCCACGCCTGGGGCATTTGGTCAGCCCATGTACTCCCAGGGTCAGGGGAACCCAGGATATGGCACTGCACCTTACGCTCCCATGCCTGGGGCCTACGGTCAGGGCTTTGACAACCCAAATCATGACCCAAACACTGGTTACCACAGCGATGATCAACCCCCAGCCTTTAGTGACAATAGTTCCTTCTCTCTTGGCTCTGGACTGGACGACAAGACCATAAGACGAGCCTTCATCCGGAAAGTCTTCATGGTGTTGACCGTCCAGCTGATGGTAACATTCTCCTTCGTGGCTGTCTTCACCTTTGTGGAGGAAATCAAAGTGTTCGTCAGGGCCAACACGTGGACCTACTGGGTGTCCTATGGCATCTTCTTCGTCTCTCTCATCACCATCAGCTGCTGTGGAGAGTTTCGCCGCAAACATCCATGGAACCTGATTGCACTCTCCATCCTGACCCTGGCTATGTCCTACATGGTGGGGATGATAGCTAGTTTCTACGACACTGACTCAGTCATCATGGCCGTGGGCATCACTGCTGTTGTCTGCTTCACCGTGGTTATCTTCTCTCTCCAGACCAAGTATGACTTCACTTCCTGTCACGGTGTGCTGTTGGTCTGTCTGATTGTCCTGTTCCTCTTCGGCTTCCTCTGCATCTTCATCCGCAACAAGATCCTGGAACTGGTCTATGCCTCGCTGGGCGCTCTACTCTTCACATGTTTCTTGGCTGTGGACACTCAGCTGCTGCTTGGCAACAAGGAGAATGCCCTGAGTCCAGAGGACTATGTTTttgctgctctctccctgtaCACTGACATCATCAACATCTTCCTCTACATCCTGTCTATCGTTGGAAGAGCACGGAACTGAGATATTCCTCTAAAGGAACCATTGAAGGATGAAGGAGTCTTTTTACAGGAGTTACCAATCTGTTCCCATATCTAGTACAACACCTGCTACACGTTGTTTTACGTGCCTATGTCTCAGGTGAACACTGCTGTCGCCTGTCGTTCTAAACGTGGTTCCCTCTGTGcttttagagcagtggttcccaaactgtgccCCCCCCTAGCGAACTCAGTCCGGCGTtgaacttactcttgaaagttgtaatagtagaatgcacaaggtgacATTTGTAAATTGGGTggtgcatcatcagttcctcttgtcagtCATTACGTACCATGTTTGGGTAACCCTGAtctagcagatgctcttatccagagaaatGTATTTTTCTATTGTCTTACTATTTTTCTTTGCTAATTTTcgtactttttaactctgcattgttgggaaaagaCTCGTAAataagtctacacctgttatattacTGTtacaaaacatttgatttgacttagtCCGTTCATTCAACTTGGGTAACTAAACaaccacacatcacagtcatagcaagtaacCCTGCTTGATAGTACTCCCTCATGTTCATTGTGCTCATTTTTACCACAATCCAGACTGGTTTAAATTGTGTAgtgtgaataatgaatcatatTTGAATTCAATTTGTTTTGTGATATTTCTGATGTTTGTGAGTCTTTGCAGCTGTATTTGTTGATATTTATTCAATTAAAACTGAATTGTGATCTCTTC
>XR_005034753.1
GCCACGTAAGGAATAATCGCGCCATCTGATGGCAGCAGGGCTGAAACAGCGTGACACAGTTCATTCGAGAAATGACGTACCTCACAAGGGGCGCGCATGACCTTTTGGACTGAAATATGTAACGCAGGACTTAGCGGAACAAATATCGCCTACCGAAAAGGAAAGTAAGTTTCTTCTAGCTGTTCAGGTGACTATCTTTCAAACTGGGAGCAACTTGGAAAACGCTTACGGAAAACTGTCAAACTTCATCGACGGAGAATACCGtgccCTGTTTCTACAGTCCAGACCAGATCAACACTTCTTGAACCCCTGTCCCAGTGAGAGGAACAGACCTAGTGATGTCCCAACCTGACAGGAATATCTATTCTTCATTGGAGGGGGGCATCCAGCCCCCAAATGTAGGCTTTGGGCAGCCAAGCCCACCAGGATATGGGATGACCTTACCCAACACGCAGGGAATGTCGAACCCATTTGGGGGGCCAGGGCCTGCTCCAGGGGGGATGCCCTTCCCCACGCCTGGGGCATTTGGTCAGCCCATGTACTCCCAGGGTCAGGGGAACCCAGGATATGGGATGACCTTACCCAACACGCAGGGAATGTCGAACCCATTTGGGGGGCCAGGAACTTCTCCAGGGGGGATGCCCTTCCCCACGCCTGGGGCATTTGGTCAGCCCATGTACTCCCAGGGTCAGGGGAACCCAGGATATGGCACTGCACCTTACGCTCCCATGCCTGGGGCCTACGGTCAGGGCTTTGACAACCCAAATCATGACCCAAACACTGGTTACCACAGCGATGATCAACCCCCAGCCTTTAGTGACAATAGTTCCTTCTCTCTTGGCTCTGGACTGGACGACAAGACCATAAGACGAGCCTTCATCCGGAAAGTCTTCATGGTGTTGACCGTCCAGCTGATGGTAACATTCTCCTTCGTGGCTGTCTTCACCTTTGTGGAGGAAATCAAAGTGTTCGTCAGGGCCAACACGTGGACCTACTGGGTGTCCTATGGCATCTTCTTCGTCTCTCTCATCACCATCAGCTGCTGTGGAGAGTTTCGCCGCAAACATCCATGGAACCTGATTGCACTCTCCATCCTGACCCTGGCTATGTCCTACATGGTGGGGATGATAGCTAGTTTCTACGACACTGACTCAGTCATCATGGCCGTGGGCATCACTGCTGTTGTCTGCTTCACCGTGGTTATCTTCTCTCTCCAGACCAAGTATGACTTCACTTCCTGTCACGGTGTGCTGTTGGTCTGTCTGATTGTCCTGTTCCTCTTCGGCTTCCTCTGCATCTTCATCCGCAACAAGATCCTGGAACTGGTCTATGCCTCGCTGGGCGCTCTACTCTTCACATGTTTCTTGGCTGTGGACACTCAGCTGCTGCTTGGCAACAAGGAGAATGCCCTGAGTCCAGAGGACTATGTTTttgctgctctctccctgtaCACTGACATCATCAACATCTTCCTCTACATCCTGTCTATCGTTGGAAGAGCACGGAACTGAGATATTCCTCTAAAGGAACCATTGAAGGATGAAGGAGTCTTTTTACAGGAGTTACCAATCTGTTCCCATATCTAGTACAACACCTGCTACACGTTGTTTTACGTGCCTATGTCTCAGGTGAACACTGCTGTCGCCTGTCGTTCTAAACGTGGTTCCCTCTGTGcttttagagcagtggttcccaaactgtgccCCCCCCTAGCGAACTCAGTCCGGCGTtgaacttactcttgaaagttgtaatagtagaatgcacaaggtgacATTTGTAAATTGGGTggtgcatcatcagttcctcttgtcatcatagcaagtaacCCTGCTTGATAGTACTCCCTCATGTTCATTGTGCTCATTTTTACCACAATCCAGACTGGTTTAAATTGTGTAgtgtgaataatgaatcatatTTGAATTCAATTTGTTTTGTGATATTTCTGATGTTTGTGAGTCTTTGCAGCTGTATTTGTTGATATTTATTCAATTAAAACTGAATTGTGATCTCTTC
>XM_036936480.1
CCATCTGATGGCAGCAGGGCTGAAACAGCGTGACACAGTTCATTCGAGAAATGACGTACCTCACAAGGGGCGCGCATGACCTTTTGGACTGAAATATGTAACGCAGGACTTAGCGGAACAAATATCGCCTACCGAAAAGGAAAtgccCTGTTTCTACAGTCCAGACCAGATCAACACTTCTTGAACCCCTGTCCCAGTGAGAGGAACAGACCTAGTGATGTCCCAACCTGACAGGAATATCTATTCTTCATTGGAGGGGGGCATCCAGCCCCCAAATGTAGGCTTTGGGCAGCCAAGCCCACCAGGATATGGGATGACCTTACCCAACACGCAGGGAATGTCGAACCCATTTGGGGGGCCAGGGCCTGCTCCAGGGGGGATGCCCTTCCCCACGCCTGGGGCATTTGGTCAGCCCATGTACTCCCAGGGTCAGGGGAACCCAGGATATGGGATGACCTTACCCAACACGCAGGGAATGTCGAACCCATTTGGGGGGCCAGGAACTTCTCCAGGGGGGATGCCCTTCCCCACGCCTGGGGCATTTGGTCAGCCCATGTACTCCCAGGGTCAGGGGAACCCAGGATATGGCACTGCACCTTACGCTCCCATGCCTGGGGCCTACGGTCAGGGCTTTGACAACCCAAATCATGACCCAAACACTGGTTACCACAGCGATGATCAACCCCCAGCCTTTAGTGACAATAGTTCCTTCTCTCTTGGCTCTGGACTGGACGACAAGACCATAAGACGAGCCTTCATCCGGAAAGTCTTCATGGTGTTGACCGTCCAGCTGATGGTAACATTCTCCTTCGTGGCTGTCTTCACCTTTGTGGAGGAAATCAAAGTGTTCGTCAGGGCCAACACGTGGACCTACTGGGTGTCCTATGGCATCTTCTTCGTCTCTCTCATCACCATCAGCTGCTGTGGAGAGTTTCGCCGCAAACATCCATGGAACCTGATTGCACTCTCCATCCTGACCCTGGCTATGTCCTACATGGTGGGGATGATAGCTAGTTTCTACGACACTGACTCAGTCATCATGGCCGTGGGCATCACTGCTGTTGTCTGCTTCACCGTGGTTATCTTCTCTCTCCAGACCAAGTATGACTTCACTTCCTGTCACGGTGTGCTGTTGGTCTGTCTGATTGTCCTGTTCCTCTTCGGCTTCCTCTGCATCTTCATCCGCAACAAGATCCTGGAACTGGTCTATGCCTCGCTGGGCGCTCTACTCTTCACATGTTTCTTGGCTGTGGACACTCAGCTGCTGCTTGGCAACAAGGAGAATGCCCTGAGTCCAGAGGACTATGTTTttgctgctctctccctgtaCACTGACATCATCAACATCTTCCTCTACATCCTGTCTATCGTTGGAAGAGCACGGAACTGAGATATTCCTCTAAAGGAACCATTGAAGGATGAAGGAGTCTTTTTACAGGAGTTACCAATCTGTTCCCATATCTAGTACAACACCTGCTACACGTTGTTTTACGTGCCTATGTCTCAGGTGAACACTGCTGTCGCCTGTCGTTCTAAACGTGGTTCCCTCTGTGcttttagagcagtggttcccaaactgtgccCCCCCCTAGCGAACTCAGTCCGGCGTtgaacttactcttgaaagttgtaatagtagaatgcacaaggtgacATTTGTAAATTGGGTggtgcatcatcagttcctcttgtcagtCATTACGTACCATGTTTGGGTAACCCTGAtctagcagatgctcttatccagagaaatGTATTTTTCTATTGTCTTACTATTTTTCTTTGCTAATTTTcgtactttttaactctgcattgttgggaaaagaCTCGTAAataagtctacacctgttatattacTGTtacaaaacatttgatttgacttagtCCGTTCATTCAACTTGGGTAACTAAACaaccacacatcacagtcatagcaagtaacCCTGCTTGATAGTACTCCCTCATGTTCATTGTGCTCATTTTTACCACAATCCAGACTGGTTTAAATTGTGTAgtgtgaataatgaatcatatTTGAATTCAATTTGTTTTGTGATATTTCTGATGTTTGTGAGTCTTTGCAGCTGTATTTGTTGATATTTATTCAATTAAAACTGAATTGTGATCTCTTC
>XM_036936473.1
TGACACAGTTCATTCGAGAAATGACGTACCTCACAAGGGGCGCGCATGACCTTTTGGACTGAAATATGTAACGCAGGACTTAGCGGAACAAATATCGCCTACCGAAAAGGAAAGTAAGTTTCTTCTAGCTGTTCAGGTGACTATCTTTCAAACTGGGAGCAACTTGGAAAACGCTTACGGAAAACTGTCAAACTTCATCGACGGAGAATACCGgacTCCGGTACAGAGGCGGGCGCTCCAGTACAGTAGTTAACAGTAACGcaccataacgttggatgccaaACGTTGATAAACCCCACAAAAGAGGCGGGTAGCAGAGACAAAGAGTGACAGTGTCCTTCATCCCGCCTGACCGGGACTGTTTTCCCGCAGTGCTGTTAACAACGtgccCTGTTTCTACAGTCCAGACCAGATCAACACTTCTTGAACCCCTGTCCCAGTGAGAGGAACAGACCTAGTGATGTCCCAACCTGACAGGAATATCTATTCTTCATTGGAGGGGGGCATCCAGCCCCCAAATGTAGGCTTTGGGCAGCCAAGCCCACCAGGATATGGGATGACCTTACCCAACACGCAGGGAATGTCGAACCCATTTGGGGGGCCAGGGCCTGCTCCAGGGGGGATGCCCTTCCCCACGCCTGGGGCATTTGGTCAGCCCATGTACTCCCAGGGTCAGGGGAACCCAGGATATGGGATGACCTTACCCAACACGCAGGGAATGTCGAACCCATTTGGGGGGCCAGGAACTTCTCCAGGGGGGATGCCCTTCCCCACGCCTGGGGCATTTGGTCAGCCCATGTACTCCCAGGGTCAGGGGAACCCAGGATATGGCACTGCACCTTACGCTCCCATGCCTGGGGCCTACGGTCAGGGCTTTGACAACCCAAATCATGACCCAAACACTGGTTACCACAGCGATGATCAACCCCCAGCCTTTAGTGACAATAGTTCCTTCTCTCTTGGCTCTGGACTGGACGACAAGACCATAAGACGAGCCTTCATCCGGAAAGTCTTCATGGTGTTGACCGTCCAGCTGATGGTAACATTCTCCTTCGTGGCTGTCTTCACCTTTGTGGAGGAAATCAAAGTGTTCGTCAGGGCCAACACGTGGACCTACTGGGTGTCCTATGGCATCTTCTTCGTCTCTCTCATCACCATCAGCTGCTGTGGAGAGTTTCGCCGCAAACATCCATGGAACCTGATTGCACTCTCCATCCTGACCCTGGCTATGTCCTACATGGTGGGGATGATAGCTAGTTTCTACGACACTGACTCAGTCATCATGGCCGTGGGCATCACTGCTGTTGTCTGCTTCACCGTGGTTATCTTCTCTCTCCAGACCAAGTATGACTTCACTTCCTGTCACGGTGTGCTGTTGGTCTGTCTGATTGTCCTGTTCCTCTTCGGCTTCCTCTGCATCTTCATCCGCAACAAGATCCTGGAACTGGTCTATGCCTCGCTGGGCGCTCTACTCTTCACATGTTTCTTGGCTGTGGACACTCAGCTGCTGCTTGGCAACAAGGAGAATGCCCTGAGTCCAGAGGACTATGTTTttgctgctctctccctgtaCACTGACATCATCAACATCTTCCTCTACATCCTGTCTATCGTTGGAAGAGCACGGAACTGAGATATTCCTCTAAAGGAACCATTGAAGGATGAAGGAGTCTTTTTACAGGAGTTACCAATCTGTTCCCATATCTAGTACAACACCTGCTACACGTTGTTTTACGTGCCTATGTCTCAGGTGAACACTGCTGTCGCCTGTCGTTCTAAACGTGGTTCCCTCTGTGcttttagagcagtggttcccaaactgtgccCCCCCCTAGCGAACTCAGTCCGGCGTtgaacttactcttgaaagttgtaatagtagaatgcacaaggtgacATTTGTAAATTGGGTggtgcatcatcagttcctcttgtcagtCATTACGTACCATGTTTGGGTAACCCTGAtctagcagatgctcttatccagagaaatGTATTTTTCTATTGTCTTACTATTTTTCTTTGCTAATTTTcgtactttttaactctgcattgttgggaaaagaCTCGTAAataagtctacacctgttatattacTGTtacaaaacatttgatttgacttagtCCGTTCATTCAACTTGGGTAACTAAACaaccacacatcacagtcatagcaagtaacCCTGCTTGATAGTACTCCCTCATGTTCATTGTGCTCATTTTTACCACAATCCAGACTGGTTTAAATTGTGTAgtgtgaataatgaatcatatTTGAATTCAATTTGTTTTGTGATATTTCTGATGTTTGTGAGTCTTTGCAGCTGTATTTGTTGATATTTATTCAATTAAAACTGAATTGTGATCTCTTC

Function

symbol description
grina Predicted to enable transmembrane transporter binding activity. Predicted to act upstream of or within endoplasmic reticulum calcium ion homeostasis and negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be integral component of membrane.

NR:

description
protein lifeguard 1-like isoform X1

GO: NA

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936461.1 False 2252 mRNA 0.48 7 6875987 6889713
XR_005034753.1 False 2019 mRNA 0.49 8 6875987 6889713
XM_036936480.1 False 2131 mRNA 0.48 7 6876008 6889713
XM_036936473.1 True 2374 mRNA 0.48 8 6876038 6889713

Neighbor

gene id symbol gene type direction distance location
rbm24b LOC106596654 coding upstream 9387 6855864 ~ 6868976 (+)
LOC110506079 NA coding upstream 33894 6841032 ~ 6842093 (+)
kif13a kif13a coding upstream 36523 6688891 ~ 6839464 (+)
LOC110505984 LOC106574154 coding upstream 187975 6685900 ~ 6688012 (+)
ptdss1a LOC106595791 coding upstream 191171 6653202 ~ 6684816 (+)
LOC118937417 LOC106592634 coding downstream 1735 6891448 ~ 6896287 (+)
smpd5 LOC106577403 coding downstream 7785 6897498 ~ 6908200 (+)
malsu1 malsu1 coding downstream 18798 6908511 ~ 6911256 (+)
stk31 LOC106595692 coding downstream 22376 6912089 ~ 6938750 (+)
LOC110535156 LOC106606167 coding downstream 51752 6941465 ~ 6944043 (+)
G109088 NA non-coding upstream 4260 6871511 ~ 6871727 (+)
G109069 NA non-coding upstream 5042 6869600 ~ 6870945 (+)
G109085 NA non-coding upstream 11684 6864063 ~ 6864303 (+)
G109070 NA non-coding upstream 12084 6859672 ~ 6863903 (+)
G109080 NA non-coding upstream 31057 6843876 ~ 6844930 (+)
G109738 NA non-coding downstream 6710 6896423 ~ 6896670 (+)
G109739 NA non-coding downstream 14257 6903970 ~ 6904855 (+)
G109748 NA non-coding downstream 38992 6928705 ~ 6929195 (+)
G109757 NA non-coding downstream 79328 6969041 ~ 6969918 (+)
G109758 NA non-coding downstream 82073 6971786 ~ 6972075 (+)
G109020 NA other upstream 242074 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 590047 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 676646 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 817652 6056996 ~ 6058335 (+)
G109821 NA other downstream 245534 7135247 ~ 7140979 (+)
pde11al LOC106573285 other downstream 413315 7282430 ~ 7304709 (+)
creb5b LOC106573409 other downstream 726246 7615910 ~ 7706660 (+)

Expression


Co-expression Network