LOC118937417 (LOC106592634)


Basic Information

Item Value
gene id LOC118937417
gene name LOC106592634
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6891448 ~ 6896287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936501.1
ggtgcacccatgaccagctctgaaaccagattgcatagcagagaagGCAGGAATACATCTATTCAGTGGCAAGACATCGTGGATGAGGACAGATTCAAACATGAGCTGCATCAATCGCCCAGACATCCTCACAGAACGTCTTCCCCGGTTAACCTGGAGTCCTACACCAAGAGCTGCATGTGCACAGTCCCACGAGAACATAAAGAGACTGCAAGCTGTTCTTACGTCATGTCTCAGAAGGTGAAAGATCCAGAGCGGTTGTTGGGGGAGATAGCCTTCCAGCTGGATCGAAGGATCCTGTCCTATGTGTTCAAGGGCCAGAGCAGACTCTATGGGTTCACTGTGCTCAATATACGAGACAAGAtctatcagGTGTCCACACACCCTCTGACGGGGAAGGTGGACGAGGGCTACAGGCTCCAGCTGTCCCAGCGCTACACTGAGCTGATGGCCAAGCTGAAGCAGCTGGGCTATAGTATGACTCTCCACCCCCCCTTCACAGAGTTCATCATCAACACCTACGGCATCCTGAAGCAGAGGGCCGACTCATACAGCGCCCGGGAGCTGGGATACAACAGCCCGGACTTCCTCAGGAGAGTAGTTATCAACGCAGCCCCCTCCAAACTGCTGAAGGATCTCCTGATGCTGTTCAGTTGCCTCTCTTTCATGGCCAGGCAGGACGGCAAGCCCCTCTTCCTCTGGTAGACGGGCTGGGAacagctctggtccagggtgtcaCGTGCAGCTTGCTGATTCTGAGTCTTTTATAAACGCTTAGGACCAGAGCTAGACTGGGACGGCCACTGATACCACCTCCCTCCACAGCAGAGCAGTCGTCTGTGGAGAGTCAAGGTTTTACACT
>XM_036936493.1
CCTATCTGTTTAGACATCATAAAGGAGATTCTATAATTATGTTCGATGTGTAATTATGACACCGGTGTCAAGTTAAATCGAACGTTCTGACACCCTATTATGATGCTATTTATAACCTATTTCATTTGAGGATTTGATTTATAAGACAGGCGGAAAGGGTCCACAAAcgtgtctcaattgtctgaaCGCCTGAAGTAGGCGCTTGGAGTCGGAGAAGTGTTTCTGGGTGGATATGGATACAGAGGGGGGCGGTGCGTCATTGCGCTTGGAGAATGAGAAACTGCGGTACGAGAATGACGACCTGAAAATAATGCTTGGCCTAATGAAGGAAAACTTTGATCTTAAGTCCAAACTGCAAACCTCCGCTCTAACCAGCGATACTCTCAGGGAATCGACAGGCAGGAATACATCTATTCAGTGGCAAGACATCGTGGATGAGGACAGATTCAAACATGAGCTGCATCAATCGCCCAGACATCCTCACAGAACGTCTTCCCCGGTTAACCTGGAGTCCTACACCAAGAGCTGCATGTGCACAGTCCCACGAGAACATAAAGAGACTGCAAGCTGTTCTTACGTCATGTCTCAGAAGGTGAAAGATCCAGAGCGGTTGTTGGGGGAGATAGCCTTCCAGCTGGATCGAAGGATCCTGTCCTATGTGTTCAAGGGCCAGAGCAGACTCTATGGGTTCACTGTGCTCAATATACGAGACAAGAtctatcagGTGTCCACACACCCTCTGACGGGGAAGGTGGACGAGGGCTACAGGCTCCAGCTGTCCCAGCGCTACACTGAGCTGATGGCCAAGCTGAAGCAGCTGGGCTATAGTATGACTCTCCACCCCCCCTTCACAGAGTTCATCATCAACACCTACGGCATCCTGAAGCAGAGGGCCGACTCATACAGCGCCCGGGAGCTGGGATACAACAGCCCGGACTTCCTCAGGAGAGTAGTTATCAACGCAGCCCCCTCCAAACTGCTGAAGGATCTCCTGATGCTGTTCAGTTGCCTCTCTTTCATGGCCAGGCAGGACGGCAAGCCCCTCTTCCTCTGGTAGACGGGCTGGGAacagctctggtccagggtgtcaCGTGCAGCTTGCTGATTCTGAGTCTTTTATAAACGCTTAGGACCAGAGCTAGACTGGGACGGCCACTGATACCACCTCCCTCCACAGCAGAGCAGTCGTCTGTGGAGAGTCAAGGTTTTACACTATAAACAAATGACTCAAACCCAACTCTTAACATGTCTAAGCTTTTATTGCTTTGGAGACAAGCGCTCTCTCATACAAACTTCACACACCCTCCGCAGACAGGACAGCTCTGCATCTCTTCACACACAGCTCTGCATCTCTTCACACACCCTCCGCAGACAGGACAGCTCTGCATCTCTTCACACACAGCTCTGCATCTCTTCACACACAGCTCTGCATCTCTTCACACACCCTCCGCAGACAGGACAGCTCTGCATCTCTTCACACACAGCTCTGCATCTCTTCACACACCCTCCGCAGACAGGACAGCTCTGCATCTCTTCACACACCCTCCGCAGACAGGACAGCTCTGCATCTCTTCACACACCCTCCGCAGACAGGACAGCTCTGCATCTCTTCACACACAGCTCTGCATCTCTTCACACACCCTCCGCAGACAGGACAGCTCTGCATCTCTTCACACACAGCTCTGCATCTCTTCACACACCCTCCACAGACAGGACAGCTCTGCATCTCCTGCATTGGACCATTTCCTAGTTTAGCCTTTTTTTAATTCATATTTTCCGTTCACTTGGTTTGTTGGTTGGTTGCACTGAGGCTGGCTTTGTGAGTTACCTGACATTATATTTCCATAGCAGTCTGTTTAAGTAATGTATACACGACTCATTttcatttacactgaacaaagtTTTAACAACATGTAAAATTTTTGTCCCAtggttcatgagctgaaataaaaaatcccagacatttgccataca

Function

NR:

description
PREDICTED: speriolin-like protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936501.1 False 862 mRNA 0.54 5 6891448 6895527
XM_036936493.1 True 1974 mRNA 0.49 5 6891585 6896287

Neighbor

gene id symbol gene type direction distance location
grinab grina coding upstream 1735 6875987 ~ 6889713 (+)
rbm24b LOC106596654 coding upstream 24848 6855864 ~ 6868976 (+)
LOC110506079 NA coding upstream 49355 6841032 ~ 6842093 (+)
kif13a kif13a coding upstream 51984 6688891 ~ 6839464 (+)
LOC110505984 LOC106574154 coding upstream 203436 6685900 ~ 6688012 (+)
smpd5 LOC106577403 coding downstream 1211 6897498 ~ 6908200 (+)
malsu1 malsu1 coding downstream 12224 6908511 ~ 6911256 (+)
stk31 LOC106595692 coding downstream 15802 6912089 ~ 6938750 (+)
LOC110535156 LOC106606167 coding downstream 45178 6941465 ~ 6944043 (+)
mpp6a LOC106594438 coding downstream 47978 6944265 ~ 6994715 (+)
G109092 NA non-coding upstream 11892 6879274 ~ 6879556 (+)
G109088 NA non-coding upstream 19721 6871511 ~ 6871727 (+)
G109069 NA non-coding upstream 20503 6869600 ~ 6870945 (+)
G109085 NA non-coding upstream 27145 6864063 ~ 6864303 (+)
G109070 NA non-coding upstream 27545 6859672 ~ 6863903 (+)
G109738 NA non-coding downstream 136 6896423 ~ 6896670 (+)
G109739 NA non-coding downstream 7683 6903970 ~ 6904855 (+)
G109748 NA non-coding downstream 32418 6928705 ~ 6929195 (+)
G109757 NA non-coding downstream 72754 6969041 ~ 6969918 (+)
G109758 NA non-coding downstream 75499 6971786 ~ 6972075 (+)
G109020 NA other upstream 257535 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 605508 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 692107 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 833113 6056996 ~ 6058335 (+)
G109821 NA other downstream 238960 7135247 ~ 7140979 (+)
pde11al LOC106573285 other downstream 406741 7282430 ~ 7304709 (+)
creb5b LOC106573409 other downstream 719672 7615910 ~ 7706660 (+)

Expression


Co-expression Network