malsu1 (malsu1)


Basic Information

Item Value
gene id malsu1
gene name malsu1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6908511 ~ 6911256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936531.1
CAGAGTCCTGGAATCAGAAACACTTCCTGTTTCTAGACAGCCCTTGGAAAAACAAACCAAAATTACTTGCGTTTTAATGGCAATGACACGATAGCTAAATCATGTATGTACTACATTGTTCTAGGCTATTTGTCTCTCAGATACTTTCACATAATGTTCTTCGAGGGTATACTGGTGTCGTTAGAGGTGCGTGTTTAATTTCAAAAGCGCGACGCAGCACAGCATTTTTGTATCGACGTTACACATGTCTTGCCTCTCAACAATTGCATCCACATCTATCTGTATTTTACAACGGTATTAGACGATATTTCGCCGATTTACATGCTGAAGAGAATGTTTTAAAGTCGGACACCCCTGGCAAGCTTCTGGCACAACAAGATGAATATGAGATGCAGAGTGACTCAAACCAAAGAAACCCACAGGAGGACTTTAACCTCGACGTGTTGGTGTCCCTGCTCCGCCAGGAGAATGCAGCAGACATCTGTGTCATCAAGGTGCCTGAGGACATCAAGTACACAGACTACTTCATCGTTGTCAGCGGCTCCTCCTCAAGACACCTCCGTGCCATGGCCCTCTACGCCATTAAAGTGTACAAATATATGAAGAAAGACCGGGACCCACATGCCAAGATTGAGGGAAAGGATGCAGAAGACTGGATGTGCATTGACTTTGGAAGGATGGTGGTCCACTTCATGCTACCAGAGACCAGAGAGGTGTATGAACTGGAGAAGCTGTGGACACTACGTTCTCTTGATGAACAGTTGAGCTCCATCCCTGTTGAGACGCTCCCAGAGGACTTCATATATGGAGCCGATGTCACCAAGTGACTCAACAATTAAAGAACTGTTGAAACTGGAGTGTTATTTATTGAAAAGAAGAGACACTTCTGGAGTCTgcttcctaaatggcaccctattccctttatagtgcactacttttgaccggagtcctatgggtcctggtcaaaagtagtgcactatgtagagaaaaGCAGTGTACCATTTGGGGCTGATTCCAAATGTTGAAAACTGCCATTACTGGTTGAATTCAGCCTGTAAATTGAAGTTGTCCTCTAAGCTTTGATCTTTGTTACCATTATAAACCAGTCTGCTATGCAGACTAGATGACACAAGAAGTGTCTTACAATCATGGTTGTTAGTGTTTGCACTGGAATGTAGCTAGGGGTTTagggtgtttttgtgtgttttgagATGTATTGATGCGATGGGGAGGGGGATTCAGTGACAATGGTTGTTTGGGCATCAGAAGACTGAATTTTATTAAAGAATTAATTTAATAAAATCCTTTTCAT
>TU125016
ACAGCCCTTGGAAAAACAAACCAAAATTACTTGCGTTTTAATGGCAATGACACGATAGCTAAATCATGTATGTACTACATTGTTCTAGGCTATTTGTCTCTCAGATACTTTCACATAATGTTCTTCGAGGGTATACTGGTGTCGTTAGAGGTGCGTGTTTAATTTCAAAAGCGCGACGCAGCACAGCATTTTTGTATCGACGTTACACATGTCTTGCCTCTCAACAATTGCATCCACATCTATCTGTATTTTACAACGGTATTAGACGATATTTCGCCGATTTACATGCTGAAGAGAATGTTTTAAAGTCGGACACCCCTGGCAAGCTTCTGGCACAACAAGATGAATATGAGATGCAGAGTGACTCAAACCAAAGTAAGTAGAACTAAaatcaactagctagctaacgttagtagtGTGAGTAACGTTACATGGTTACAAGGCACCCAATTCAATTACAAAGTCACACTATCTGATCTAGCTAAGCGCCATACCTGCCTCTTCGTGTTAAAATTCGTTACGTATTTTTTCGAAATTACAGGCTTGTGCATGACACTTTTCTGTAGACCAATTATAAAGCTGGGGATATGGGGATAACTGTCGGAGTTTACTCACCTCCAAAACATTCTACTATAAATACCGGCAAAAAATAAATGCATAATGGTCTCCTTTTCCATTTCACAGAAATCAGTTATAGTCAATATTTAGCTTGAATCCTTCCAAAACATGTTTCACAGGATAGATTCTATGTAACATTTTAAACGAAACTTCCTTTACTTTGTTGCTGATACAATGCACCCAGGCTAGTGTATTACGAATGAACATACTCTAGGACTGTTTAGTGTGAtgatcctccctctccccttgcTGTAGGAAACCCACAGGAGGACTTTAACCTCGACGTGTTGGTGTCCCTGCTCCGCCAGGAGAATGCAGCAGACATCTGTGTCATCAAGGTGCCTGAGGACATCAAGTACACAGACTACTTCATCGTTGTCAGCGGCTCCTCCTCAAGACACCTCCGTGCCATGGCCCTCTACGCCATTAAAGTGTACAAATATATGAAGAAAGACCGGGACCCACATGCCAAGATTGAGGGAAAGGATGCAGAAGACTGGATGTGCATTGACTTTGGAAGGATGGTGGTCCACTTCATGCTACCAGAGACCAGAGAGGTGTATGAACTGGAGAAGCTGTGGACACTACGTTCTCTTGATGAACAGTTGAGCTCCATCCCTGTTGAGACGCTCCCAGAGGACTTCATATATGGAGCCGATGTCACCAAGTGACTCAACAATTAAAGAACTGTTGAAACTGGAGTGTTATTTATTGAAAAGAAGAGACACTTCTGGAGTCTgcttcctaaatggcaccctattccctttatagtgcactacttttgaccggagtcctatgggtcctggtcaaaagtagtgcactatgtagagaaaaGCAGTGTACCATTTGGGGCTGATTCCAAATGTTGAAAACTGCCATTACTGGTTGAATTCAGCCTGTAAATTGAAGTTGTCCTCTAAGCTTTGATCTTTGTTACCATTATAAACCAGTCTGCTATGCAGACTAGATGACACAAGAAGTGTCTTACAATCATGGTTGTTAGTGTTTGCACTGGAATGTAGCTAGGGGTTTagggtgtttttgtgtgttttgagATGTATTGATGCGATGGGGAGGGGGATTCAGTGACAATGGTTGTTTGGGC

Function

symbol description
malsu1 Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in negative regulation of ribosome biogenesis and negative regulation of translation. Predicted to be active in mitochondrion. Orthologous to human MALSU1 (mitochondrial assembly of ribosomal large subunit 1).

NR:

description
mitochondrial assembly of ribosomal large subunit protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936531.1 False 1312 mRNA 0.43 4 6908511 6911256
TU125016 True 1723 TUCP 0.42 3 6908547 6911205

Neighbor

gene id symbol gene type direction distance location
smpd5 LOC106577403 coding upstream 311 6897498 ~ 6908200 (+)
LOC118937417 LOC106592634 coding upstream 12224 6891448 ~ 6896287 (+)
grinab grina coding upstream 18798 6875987 ~ 6889713 (+)
rbm24b LOC106596654 coding upstream 41911 6855864 ~ 6868976 (+)
LOC110506079 NA coding upstream 66418 6841032 ~ 6842093 (+)
stk31 LOC106595692 coding downstream 833 6912089 ~ 6938750 (+)
LOC110535156 LOC106606167 coding downstream 30209 6941465 ~ 6944043 (+)
mpp6a LOC106594438 coding downstream 33009 6944265 ~ 6994715 (+)
LOC110535127 LOC106592104 coding downstream 119369 7030625 ~ 7078975 (+)
LOC110535004 LOC106596209 coding downstream 156027 7067283 ~ 7079077 (+)
G109739 NA non-coding upstream 3656 6903970 ~ 6904855 (+)
G109738 NA non-coding upstream 11841 6896423 ~ 6896670 (+)
G109092 NA non-coding upstream 28955 6879274 ~ 6879556 (+)
G109088 NA non-coding upstream 36784 6871511 ~ 6871727 (+)
G109069 NA non-coding upstream 37566 6869600 ~ 6870945 (+)
G109748 NA non-coding downstream 17449 6928705 ~ 6929195 (+)
G109757 NA non-coding downstream 57785 6969041 ~ 6969918 (+)
G109758 NA non-coding downstream 60530 6971786 ~ 6972075 (+)
G109764 LOC106592104 non-coding downstream 85961 6997217 ~ 7090223 (+)
G109772 NA non-coding downstream 87622 6998878 ~ 6999180 (+)
G109020 NA other upstream 274598 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 622571 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 709170 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 850176 6056996 ~ 6058335 (+)
G109821 NA other downstream 223991 7135247 ~ 7140979 (+)
pde11al LOC106573285 other downstream 391772 7282430 ~ 7304709 (+)
creb5b LOC106573409 other downstream 704703 7615910 ~ 7706660 (+)
G110644 NA other downstream 987340 7898596 ~ 7935137 (+)

Expression


Co-expression Network