LOC110535156 (LOC106606167)


Basic Information

Item Value
gene id LOC110535156
gene name LOC106606167
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6941465 ~ 6944043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620021.2
CCCTGCCACAGATATAAAACTCACTGGATGCTTGCTGCCAAACACAGTTGCGAGCACAGAACAGTCATTCAACGAAAAACCATCTCCAGTCTTCACAACATAAAatgCGCGCTAACGCAGCGATGTCTCTGGGTATGCTGGCCGTGTACTTGCTGATATGCATGTCCAATCTGATGGCCGCGTATCCATCCAAACCCGTCATTCCCGCAGAAGATGCGCCTGGCGAGGACTTcgccaagtacttctctgcactCAGACACTACATCAACCAAATCACTCGACAGCGGTATGGGAAAAGATCCAGCCCTGATATGGTGTTCTCTGACCTGCTACAGAGGGAGAGCACAGAGAGCGTCCCACTAGCAAGCTATGGAAGATATGAGGATCTACCGTTGTGGTGGTGAAGCCAGTGTATTACGGACTTCCATACCAGTCCCTTTCAACAACACCACACTGCCTGTTTGTCACAGcaccacaacaacaccacacTGCCTGTTGGTCACAGcaccacaacaacaccacaacaacaccacacTGCCTGTTGGTCACCGACTCGACCTGGACTTTAATGGATATCTACAGCCTGCATGCAAccacctccctgtctgtctgtcatagtagAAGTGTCCTGTACATATGTTACTTTCTCCTTTTGTGCATCACACTGTGTACTGTAAACCAAAATAAACATTTACTGGTTGGATCAAAATGCATCATATAAAGTACCTTGGATCAATGTTTTAGAATGTGACTCTGTTTTAAGTATATAAACAAGAAAATCCTAGGACTCCAGAATCAGAAAGTAAGCAAAGTGGTCtttcttaaagaaaaacatttctagtgtgttttttttttaaacacttattGGATACTAGTTGTTCCTGCCACAACCAGGACGAGGACCTACACCTAGAACCAGTGCTGCACAGGGTTCTCTTTGTTCCCACAGGTTTTACTAAGATATACTGCCCTCTTCTGGACTGGCCTTAGTACCCTGACACCATTATACTccagcttggactgtagccttcAAACAGCTGTCTGGGGTGAGAGGTGAGAATAACAATCTATTAATTCTGTCCATTATTTCAATGTGTAACATTGTTAATCTTTCACTGGTCTGTGTGGATTTGTATTGTGTACAATCGTTCTATATAACAGCACCTTGCCTAACATGAAAACAGATTTTAAGGTGTAGAATCATTAAGTGGCCTGGGATCCCTATggatccctggtcaaaagtagttcactatggaatagggtacaatttgggacACTGGCCTGGTTACCTCCAAAGGGACATGAGATAATGAGATCTGGTGCATGAACCCAGTTACCTAATctctgtcctaaatggcaccctctgtagtgcactatttattgCCTGGTAGGGTACCACTTGGGACTAGGTCCTGTTTTAGAAGATAGAACAGTCCCTGCATACTAATGGGTTCATTGTTCTAGAATGCTCAAATGTAACACAAGGTTATGTCCCAAattggcaccctgttctctatattgtggactacttttgaccagggctcagtagtgcactatgtatggaatagggtgccaatttgaGATGTAGACATACAGTAGGGTTCTTTATGTTGACGGCCAGATAATCATGTCAGGTCATGTTATGTCTTTGGCTGTACTGAATAAATAG
>XM_036936652.1
GATATAAAACTCACTGGATGCTTGCTGCCAAACACAGTTGCGAGCACAGAACAGTCATTCAACGAAAAACCATCTCCAGTCTTCACAACATAAAGTGAGTAAAAAGCACTTTTCTATTGCTGACTATTTGCCTTTTTATAGACTTCCAGGATTTTTGTAAAGTTGCTCTTGATTGAATTACTAAAGAAAATATTTGTCCTCTGGAAAACCTTGTTTTCTGCACATTCAAAATATAAGAGTTGGTTAATATTTTTTCAGTTGGTTATTAAAGATGATGGAATTTTGTTTTGGATAACAAGGTGTCGTTGGCTTTATGGTTCATTTTATAAGTTATTACGCACAGtagcaaataaaaataattgCATTTTATTGGCTACAATATGAACTAAGGACAGGAGCGTAGTCACAGTGCATTTGTTTTCTAGTTTGTTTCTCTGCGCttttgtgtgtttttagatgCGCGCTAACGCAGCGATGTCTCTGGGTATGCTGGCCGTGTACTTGCTGATATGCATGTCCAATCTGATGGCCGCGTATCCATCCAAACCCGTCATTCCCGCAGAAGATGCGCCTGGCGAGGACTTcgccaagtacttctctgcactCAGACACTACATCAACCAAATCACTCGACAGCGGTATGGGAAAAGATCCAGCCCTGATATGGTGTTCTCTGACCTGCTACAGAGGGAGAGCACAGAGAGCGTCCCACTAGCAAGCTATGGAAGATATGAGGATCTACCGTTGTGGTGGTGAAGCCAGTGTATTACGGACTTCCATACCAGTCCCTTTCAACAACACCACACTGCCTGTTTGTCACAGcaccacaacaacaccacacTGCCTGTTGGTCACAGcaccacaacaacaccacaacaacaccacacTGCCTGTTGGTCACCGACTCGACCTGGACTTTAATGGATATCTACAGCCTGCATGCAAccacctccctgtctgtctgtcatagtagAAGTGTCCTGTACATATGTTACTTTCTCCTTTTGTGCATCACACTGTGTACTGTAAACCAAAATAAACATTTACTGGTTGGATCAAAATGCATCATATAAAGTACCTTGGATCAATGTTTTAGAATGTGACTCTGTTTTAAGTATATAAACAAGAAAATCCTAGGACTCCAGAATCAGAAAGTAAGCAAAGTGGTCtttcttaaagaaaaacatttctagtgtgttttttttttaaacacttattGGATACTAGTTGTTCCTGCCACAACCAGGACGAGGACCTACACCTAGAACCAGTGCTGCACAGGGTTCTCTTTGTTCCCACAGGTTTTACTAAGATATACTGCCCTCTTCTGGACTGGCCTTAGTACCCTGACACCATTATACTccagcttggactgtagccttcAAACAGCTGTCTGGGGTGAGAGGTGAGAATAACAATCTATTAATTCTGTCCATTATTTCAATGTGTAACATTGTTAATCTTTCACTGGTCTGTGTGGATTTGTATTGTGTACAATCGTTCTATATAACAGCACCTTGCCTAACATGAAAACAGATTTTAAGGTGTAGAATCATTAAGTGGCCTGGGATCCCTATggatccctggtcaaaagtagttcactatggaatagggtacaatttgggacACTGGCCTGGTTACCTCCAAAGGGACATGAGATAATGAGATCTGGTGCATGAACCCAGTTACCTAATctctgtcctaaatggcaccctctgtagtgcactatttattgCCTGGTAGGGTACCACTTGGGACTAGGTCCTGTTTTAGAAGATAGAACAGTCCCTGCATACTAATGGGTTCATTGTTCTAGAATGCTCAAATGTAACACAAGGTTATGTCCCAAattggcaccctgttctctatattgtggactacttttgaccagggctcagtagtgcactatgtatggaatagggtgccaatttgaGATGTAGACATACAGTAGGGTTCTTTATGTTGACGGCCAGATAATCATGTCAGGTCATGTTATGTCTTTGGCTGTACTGAATAAATAG
>TU125022
GAGCACAGAACAGTCATTCAACGAAAAACCATCTCCAGTCTTCACAACATAAAatgCGCGCTAACGCAGCGATGTCTCTGGGTATGCTGGCCGTGTACTTGCTGATATGCATGTCCAATCTGATGGCCGCGTATCCATCCAAACCCGTCATTCCCGCAGAAGATGCGCCTGGCGAGGACTTcgccaagtacttctctgcactCAGACACTACATCAACCAAATCACTCGACAGCGGTATGGGAAAAGATCCAGCCCTGATATGGTGTTCTCTGACCTGCTACAGAGGGAGAGCACAGAGAGCGTCCCACTAGCAAGCTATGGAAGATATGAGGATCTACCGTTGTGGTGGTGAAGCCAGTGTATTACGGACTTCCATACCAGTCCCTTTCAACAACACCACACTGCCTGTTTGTCACAGcaccacaacaacaccacacTGCCTGTTGGTCACAGcaccacaacaacaccacaacaacaccacacTGCCTGTTGGTCACCGACTCGACCTGGACTTTAATGGATATCTACAGCCTGCATGCAAccacctccctgtctgtctgtcatagtagAAGTGTCCTGTACATATGTTACTTTCTCCTTTTGTGCATCACACTGTGTACTGTAAACCAAAATAAACATTTACTGGTTGGATCAAAA

Function

NR:

description
pro-neuropeptide Y-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620021.2 False 1669 mRNA 0.44 4 6941465 6944043
XM_036936652.1 False 2021 mRNA 0.42 3 6941475 6944043
TU125022 True 658 TUCP 0.49 4 6941516 6943083

Neighbor

gene id symbol gene type direction distance location
stk31 LOC106595692 coding upstream 2715 6912089 ~ 6938750 (+)
malsu1 malsu1 coding upstream 30209 6908511 ~ 6911256 (+)
smpd5 LOC106577403 coding upstream 33265 6897498 ~ 6908200 (+)
LOC118937417 LOC106592634 coding upstream 45178 6891448 ~ 6896287 (+)
grinab grina coding upstream 51752 6875987 ~ 6889713 (+)
mpp6a LOC106594438 coding downstream 222 6944265 ~ 6994715 (+)
LOC110535127 LOC106592104 coding downstream 86582 7030625 ~ 7078975 (+)
LOC110535004 LOC106596209 coding downstream 123240 7067283 ~ 7079077 (+)
pde11al LOC106573285 coding downstream 338387 7282430 ~ 7304709 (+)
cbx3b LOC106573104 coding downstream 414862 7358905 ~ 7369148 (+)
G109748 NA non-coding upstream 12270 6928705 ~ 6929195 (+)
G109739 NA non-coding upstream 36610 6903970 ~ 6904855 (+)
G109738 NA non-coding upstream 44795 6896423 ~ 6896670 (+)
G109092 NA non-coding upstream 61909 6879274 ~ 6879556 (+)
G109088 NA non-coding upstream 69738 6871511 ~ 6871727 (+)
G109757 NA non-coding downstream 24998 6969041 ~ 6969918 (+)
G109758 NA non-coding downstream 27743 6971786 ~ 6972075 (+)
G109764 LOC106592104 non-coding downstream 53174 6997217 ~ 7090223 (+)
G109772 NA non-coding downstream 54835 6998878 ~ 6999180 (+)
G109782 NA non-coding downstream 93401 7037444 ~ 7037840 (+)
rbm24b LOC106596654 other upstream 72489 6855864 ~ 6868976 (+)
G109020 NA other upstream 307552 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 655525 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 742124 6151712 ~ 6199341 (+)
G109821 NA other downstream 191204 7135247 ~ 7140979 (+)
creb5b LOC106573409 other downstream 671916 7615910 ~ 7706660 (+)
G110644 NA other downstream 954553 7898596 ~ 7935137 (+)
G110674 NA other downstream 1129323 8073366 ~ 8103920 (+)

Expression


Co-expression Network