LOC110535004 (LOC106596209)


Basic Information

Item Value
gene id LOC110535004
gene name LOC106596209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7067283 ~ 7079077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936669.1
TAACCAACCCAAATACGTatagctacactcttagaaaaagggttccaaaagggttctttgcatAGGGTTCTACCAAGAGCCGTTTTCATCTGAAGAATCCTTTTTGGAAAATGATGGTTATTTAAGGTAAAAGATTCTACCTAGAACTTTTTATATCCTGCAAACCATTTTTGGAAGAAAGGGTTATTTGATAATTATTTGGAAGGAAAGAAGGGTTCTTCTACACAGAACCCTTCTGAATCTGAATAAGCtttttattgtacctttattggAAACCACATACATGAGaaccttacagtgacatgctaGCGGCTAGTCCACTGTTACAGCACAGTGTACAGTGGTAGAGAGAAACCTACATAGAATTCACATAGAAACCTGCTATTTTATACAATGCATTGTGATTGTGGACTGGTTGGCATAGTTGGTTCCAGCTGTAATAGGACGCTACTGTATTTAATCAAACTAGGAAACAAACTGTGGGTGTATTTGGAATGCAGTTCCTGTGTCATTGTGAGAAGGGGGTGTGGCAAAGACACTCCTCTTATAGGCTTGTGACTGACACATCCCCTTCAGAGATTTAGCACTGACTGAGTCCCAAGGACCTGGAGGAAGAAACGCCTGAGACACCATTCTCAACCATCTCCTCATCTGTCTCCTTGACCTCTTTGGACTTATAGCTATGGCTACGTTTGCCTCAGCAACAGAAAACTTTGTGAAGAACGTGGATTCTGATGGCAACCTGATACCTGTGTCCTCCCTGAACAACTGTGCTGTCAAGGAGTCTGAATTTGTGGACTACAGTGCGACATTTAGTGACAGCCGAGATGCCAGCGTAGACGTGGAGACAAAATTGGCGGCAGATGCAGTTAATGTAAACTTTAACATGGGGGCAAAACACGCCTCCACACACAAGTCGTCCCTTGGCAAACTGAAGAAAGAAGAGGTTGACCTGAAGTGGTTACAAAACAACTCAAAACACAAGCTTCTGGACATGTCCCACTATCTGATCCAGGAGGCCCGTAATAGTAGGTCTGTGTttggggtggtgatggagaggATTGTGACGAGTGAGCCGTGCTCGATAAGAGTAAAGAAGCATCAGGCTGGAAAATGTGGTGCTGGAGGGAAGGTCACTGGAGTCCCGGTGTCTGTAAAGGCGAAAGGCAAAGTACAAGAAGTCAAAGATGTGTTCCTGGAGATTCCTAAAAACACTGTCATTGCCTACAGCATTGATGAGATCATGGTCCAACTCGATGGACACTTTGAGGTGCGCTCCTTTGGAAAGGGTGGGTTTGAAAGAGCCTGGAACCTTGTAGGTTCATGCAATATGTCCTCGGTGGTGTCGCTCCCAAAGGAATGCCTCCTTCGTCAAGAACTGGCAAAACTGAGGGGTCATTTCCAGGTGCTGTCATCCCTGCCAACAGCTAAACGCTCCTCTCTGCTCCAGCTCCTCAAGACAaccatggaggacagagaggcagTCAGTGTACTGGAGAGTGTGCTGGATCAGATGTTGGTTGATGAGACACCTGACATGGATGATCTTATGGAGGAGACTGAGAAGCAGACAGTCCAGACCATATTGGACCTTTTACATGAGTCTGATGGAACAAATGAGGGCCAGACATACGACGAGCCACCCTCACTGCTCTGTTCCGTCAACCTCATTGTCAGCGCCATGAATGAAATGCCAGAtgggtgtctctctgtgttgggaTCCTGTTGCAGTCCTCCAGTCTTACAGGCCCTGCAGATCCTGGTGCAGCATGTGGCAGCAGGGAGTGGGGAGACCCTCTCTCTGAGAGATGCAGGTCTGGCTGTTCTGACTGAGGAGGAGCTGTATCAGAGGACAGAGCGTCTCTTTGGTCTCTCTGAAGTTAcactgaagagagaggaggacacaCTGAGGACAGAGATGAAGGACCAGCCTGGATACCTTCCTCTAGTCATGAGTATCACTGTGAAAGGCCTGGCCTCTTTAgtgtaaggagggagagagagggagagagaccatgaAACTTGTCAATCCTGTTTGACCCATTCAGTATTTTACTCCTGCGCTAGGTGAGCTGAAGAACTAGTGAACAACAGTGAATGTATCCTTGTAATGTTTTCAGTAAAGTTCAACAAACGATA
>XM_036936665.1
ACCAACCCAAATACGTatagctacactcttagaaaaagggttccaaaagggttctttgcatAGGGTTCTACCAAGAGCCGTTTTCATCTGAAGAATCCTTTTTGGAAAATGATGGTTATTTAAGGTAAAAGATTCTACCTAGAACTTTTTATATCCTGCAAACCATTTTTGGAAGAAAGGGTTATTTGATAATTATTTGGAAGGAAAGAAGGGTTCTTCTACACAGAACCCTTCTGAATCTGAATAAGCtttttattgtacctttattggAAACCACATACATGAGaaccttacagtgacatgctaGCGGCTAGTCCACTGTTACAGCACAGTGTACAGTGGTAGAGAGAAACCTACATAGAATTCACATAGAAACCTGCTATTTTATACAATGCATTGTGATTGTGGACTGGTTGGCATAGTTGGTTCCAGCTGTAATAGGACGCTACTGTATTTAATCAAACTAGGAAACAAACTGTGGGTGTATTTGGAATGCAGTTCCTGTGTCATTGTGAGAAGGGGGTGTGGCAAAGACACTCCTCTTATAGGCTTGTGACTGACACATCCCCTTCAGAGATTTAGCACTGACTGAGTCCCAAGGACCTGGAGGAAGAAACGGTGAGAACCTGCCTGAGACACCATTCTCAACCATCTCCTCATCTGTCTCCTTGACCTCTTTGGACTTATAGCTATGGCTACGTTTGCCTCAGCAACAGAAAACTTTGTGAAGAACGTGGATTCTGATGGCAACCTGATACCTGTGTCCTCCCTGAACAACTGTGGCAAGTTGAACCCTCTCTCACTGGTTCTCAAACAGTCACCTTTCTTTATGAAAACCAAATACACGCCTACTAAGTTGACCCTCGATGATGTGTTTACCAAAAATACACCCTTAAATCCAGCTGTCAAGGAGTCTGAATTTGTGGACTACAGTGCGACATTTAGTGACAGCCGAGATGCCAGCGTAGACGTGGAGACAAAATTGGCGGCAGATGCAGTTAATGTAAACTTTAACATGGGGGCAAAACACGCCTCCACACACAAGTCGTCCCTTGGCAAACTGAAGAAAGAAGAGGTTGACCTGAAGTGGTTACAAAACAACTCAAAACACAAGCTTCTGGACATGTCCCACTATCTGATCCAGGAGGCCCGTAATAGTAGGTCTGTGTttggggtggtgatggagaggATTGTGACGAGTGAGCCGTGCTCGATAAGAGTAAAGAAGCATCAGGCTGGAAAATGTGGTGCTGGAGGGAAGGTCACTGGAGTCCCGGTGTCTGTAAAGGCGAAAGGCAAAGTACAAGAAGTCAAAGATGTGTTCCTGGAGATTCCTAAAAACACTGTCATTGCCTACAGCATTGATGAGATCATGGTCCAACTCGATGGACACTTTGAGGTGCGCTCCTTTGGAAAGGGTGGGTTTGAAAGAGCCTGGAACCTTGTAGGTTCATGCAATATGTCCTCGGTGGTGTCGCTCCCAAAGGAATGCCTCCTTCGTCAAGAACTGGCAAAACTGAGGGGTCATTTCCAGGTGCTGTCATCCCTGCCAACAGCTAAACGCTCCTCTCTGCTCCAGCTCCTCAAGACAaccatggaggacagagaggcagTCAGTGTACTGGAGAGTGTGCTGGATCAGATGTTGGTTGATGAGACACCTGACATGGATGATCTTATGGAGGAGACTGAGAAGCAGACAGTCCAGACCATATTGGACCTTTTACATGAGTCTGATGGAACAAATGAGGGCCAGACATACGACGAGCCACCCTCACTGCTCTGTTCCGTCAACCTCATTGTCAGCGCCATGAATGAAATGCCAGAtgggtgtctctctgtgttgggaTCCTGTTGCAGTCCTCCAGTCTTACAGGCCCTGCAGATCCTGGTGCAGCATGTGGCAGCAGGGAGTGGGGAGACCCTCTCTCTGAGAGATGCAGGTCTGGCTGTTCTGACTGAGGAGGAGCTGTATCAGAGGACAGAGCGTCTCTTTGGTCTCTCTGAAGTTAcactgaagagagaggaggacacaCTGAGGACAGAGATGAAGGACCAGCCTGGATACCTTCCTCTAGTCATGAGTATCACTGTGAAAGGCCTGGCCTCTTTAgtgtaaggagggagagagagggagagagaccatgaAACTTGTCAATCCTGTTTGACCCATTCAGTATTTTACTCCTGCGCTAGGTGAGCTGAAGAACTAGTGAACAACAGTGAATGTATCCTTGTAATGTTTTCAGTAAAGTTCAACAAACGATA
>XM_036936664.1
CCAACCCAAATACGTatagctacactcttagaaaaagggttccaaaagggttctttgcatAGGGTTCTACCAAGAGCCGTTTTCATCTGAAGAATCCTTTTTGGAAAATGATGGTTATTTAAGGTAAAAGATTCTACCTAGAACTTTTTATATCCTGCAAACCATTTTTGGAAGAAAGGGTTATTTGATAATTATTTGGAAGGAAAGAAGGGTTCTTCTACACAGAACCCTTCTGAATCTGAATAAGCtttttattgtacctttattggAAACCACATACATGAGaaccttacagtgacatgctaGCGGCTAGTCCACTGTTACAGCACAGTGTACAGTGGTAGAGAGAAACCTACATAGAATTCACATAGAAACCTGCTATTTTATACAATGCATTGTGATTGTGGACTGGTTGGCATAGTTGGTTCCAGCTGTAATAGGACGCTACTGTATTTAATCAAACTAGGAAACAAACTGTGGGTGTATTTGGAATGCAGTTCCTGTGTCATTGTGAGAAGGGGGTGTGGCAAAGACACTCCTCTTATAGGCTTGTGACTGACACATCCCCTTCAGAGATTTAGCACTGACTGAGTCCCAAGGACCTGGAGGAAGAAACGCCTGAGACACCATTCTCAACCATCTCCTCATCTGTCTCCTTGACCTCTTTGGACTTATAGCTATGGCTACGTTTGCCTCAGCAACAGAAAACTTTGTGAAGAACGTGGATTCTGATGGCAACCTGATACCTGTGTCCTCCCTGAACAACTGTGGCAAGTTGAACCCTCTCTCACTGGTTCTCAAACAGTCACCTTTCTTTATGAAAACCAAATACACGCCTACTAAGTTGACCCTCGATGATGTGTTTACCAAAAATACACCCTTAAATCCAGCTGTCAAGGAGTCTGAATTTGTGGACTACAGTGCGACATTTAGTGACAGCCGAGATGCCAGCGTAGACGTGGAGACAAAATTGGCGGCAGATGCAGTTAATGTAAACTTTAACATGGGGGCAAAACACGCCTCCACACACAAGTCGTCCCTTGGCAAACTGAAGAAAGAAGAGGTTGACCTGAAGTGGTTACAAAACAACTCAAAACACAAGCTTCTGGACATGTCCCACTATCTGATCCAGGAGGCCCGTAATAGTAGGTCTGTGTttggggtggtgatggagaggATTGTGACGAGTGAGCCGTGCTCGATAAGAGTAAAGAAGCATCAGGCTGGAAAATGTGGTGCTGGAGGGAAGGTCACTGGAGTCCCGGTGTCTGTAAAGGCGAAAGGCAAAGTACAAGAAGTCAAAGATGTGTTCCTGGAGATTCCTAAAAACACTGTCATTGCCTACAGCATTGATGAGATCATGGTCCAACTCGATGGACACTTTGAGGTGCGCTCCTTTGGAAAGGGTGGGTTTGAAAGAGCCTGGAACCTTGTAGGTTCATGCAATATGTCCTCGGTGGTGTCGCTCCCAAAGGAATGCCTCCTTCGTCAAGAACTGGCAAAACTGAGGGGTCATTTCCAGGTGCTGTCATCCCTGCCAACAGCTAAACGCTCCTCTCTGCTCCAGCTCCTCAAGACAaccatggaggacagagaggcagTCAGTGTACTGGAGAGTGTGCTGGATCAGATGTTGGTTGATGAGACACCTGACATGGATGATCTTATGGAGGAGACTGAGAAGCAGACAGTCCAGACCATATTGGACCTTTTACATGAGTCTGATGGAACAAATGAGGGCCAGACATACGACGAGCCACCCTCACTGCTCTGTTCCGTCAACCTCATTGTCAGCGCCATGAATGAAATGCCAGAtgggtgtctctctgtgttgggaTCCTGTTGCAGTCCTCCAGTCTTACAGGCCCTGCAGATCCTGGTGCAGCATGTGGCAGCAGGGAGTGGGGAGACCCTCTCTCTGAGAGATGCAGGTCTGGCTGTTCTGACTGAGGAGGAGCTGTATCAGAGGACAGAGCGTCTCTTTGGTCTCTCTGAAGTTAcactgaagagagaggaggacacaCTGAGGACAGAGATGAAGGACCAGCCTGGATACCTTCCTCTAGTCATGAGTATCACTGTGAAAGGCCTGGCCTCTTTAgtgtaaggagggagagagagggagagagaccatgaAACTTGTCAATCCTGTTTGACCCATTCAGTATTTTACTCCTGCGCTAGGTGAGCTGAAGAACTAGTGAACAACAGTGAATGTATCCTTGTAATGTTTTCAGTAAAGTTCAACAAACGATA

Function

NR:

description
non-syndromic hearing impairment protein 5 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936669.1 False 2139 mRNA 0.46 10 7067283 7079077
XM_036936665.1 False 2268 mRNA 0.46 10 7067285 7079077
XM_036936664.1 True 2256 mRNA 0.46 10 7067286 7079077

Neighbor

gene id symbol gene type direction distance location
mpp6a LOC106594438 coding upstream 72568 6944265 ~ 6994715 (+)
LOC110535156 LOC106606167 coding upstream 123240 6941465 ~ 6944043 (+)
stk31 LOC106595692 coding upstream 128533 6912089 ~ 6938750 (+)
malsu1 malsu1 coding upstream 156027 6908511 ~ 6911256 (+)
smpd5 LOC106577403 coding upstream 159083 6897498 ~ 6908200 (+)
pde11al LOC106573285 coding downstream 203353 7282430 ~ 7304709 (+)
cbx3b LOC106573104 coding downstream 279828 7358905 ~ 7369148 (+)
snx10b LOC106593746 coding downstream 290266 7369343 ~ 7377095 (+)
tax1bp1b LOC106594183 coding downstream 417106 7496183 ~ 7531274 (+)
creb5b LOC106573409 coding downstream 536833 7615910 ~ 7706660 (+)
G109792 NA non-coding upstream 2523 7064419 ~ 7064760 (+)
G109783 NA non-coding upstream 16723 7049329 ~ 7050560 (+)
G109782 NA non-coding upstream 29443 7037444 ~ 7037840 (+)
G109772 NA non-coding upstream 68103 6998878 ~ 6999180 (+)
G109758 NA non-coding upstream 95208 6971786 ~ 6972075 (+)
G109761 NA non-coding downstream 10215 7089292 ~ 7108061 (+)
G109797 NA non-coding downstream 13349 7092426 ~ 7117995 (+)
G109762 LOC106596760 non-coding downstream 24978 7104055 ~ 7105297 (+)
G109766 LOC106592104 non-coding downstream 37351 7116428 ~ 7129520 (+)
G109821 NA non-coding downstream 59322 7135247 ~ 7140979 (+)
rbm24b LOC106596654 other upstream 198307 6855864 ~ 6868976 (+)
G109020 NA other upstream 433370 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 781343 6282071 ~ 6285940 (+)
G110644 NA other downstream 819519 7898596 ~ 7935137 (+)
G110674 NA other downstream 994289 8073366 ~ 8103920 (+)

Expression


Co-expression Network