cbx3b (LOC106573104)


Basic Information

Item Value
gene id cbx3b
gene name LOC106573104
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7358905 ~ 7369148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936698.1
CTTCCCTTGGCAACCACTTCCTCCGAGCTCCCAACCCGGCCATCTTTATTTAACTCATTCATGAAAAGTTTTTGTAAGACACTGGAACATTGTTGCATTTGGCTACGCATCTAACGAACCACGGGACACATTGATATTATTTTTGTATCCGCGTGCTCCAGCGTGTGCTACATCGTAGCGTATTTCTGTCACAGCCAAAGTTGGACTGAAAGCGTTAGAATGAGAAAAAAGCAGAATGTGAAACAGAGAAAGGCAGAAAcaataataacaccaacaccattaacaacaacaacgctatcaacaacaacaacagcagcagcagtcgtcCAGGAGTTTGTGGTTGAGAAGATCATCCACCGAAGGGTCTTCAATGGAAGAGTAGAGTACTATCTGAAGTGGAAAGGATTCACCGATGCTGACAACACCTGGGAACCAGAGGACAACTTGGTCTGTCCTGAACTGATAGAAGAGTTCCTGAGAAACCTCTGTTTGTCTGGAGAGAATCAGGTTGAGGAAGAGAACCTACGGCCGGTGGAACCGGAGCTCGTCCCCAAAGAGGAACTGGCAGAACAGGAGACTGAGATTGTGTACAGCGAGCAGAGACATAATGACCTCCAGGAACCTGCTGACCAGGATTCTCCTACTGCCCTCACGTGCCCCCTGGAACCTGAACGCATCATCGGCTCCACAGAAAGACACGGAGAACTCATGTTCCTCATCAAATGGAAGAACCGTGACGAGGTGGCCCTGCTGTCAGCCAGGGAGGCCAGCGCCAGGTATCCTGAGGTGGTTGTAGCCTTCTACGAGGACAAACTCACCTGGCACTCTGGGGACGAGGACCAgtaaaggatgtgtgtgtgtgtgtgtcgtagagtgtgtgtgtgcatgtcagtACACAAGTAGGTATGTGAACTGACAAGCATCTGTAGGCATCTCATAGGTTAATTTCTCCTCCAGAGAACCAAGGTCCTCCTTGAGCTGACATTAAAAGCACAGTGTGTGAAACGATGTCCTGCTGCAGGTAGATTGAGTCATCGTGGCAGGTGTAAAAGCCCTCTACGGGGTCTTCCTGCTTCCTGTGGTGCTGGGTGAGGTCACAATGCCTTTGGGGTGTAGTGCAGCGTGTGGTGGAGTTCAGAACCATTCATAGAgacgtctatctctctctgtggccCTGATTGAGTTGAAACTAATGAAATGAAGGCAGACAGCCTGTTCACACTGATGAATTCTCCCCCCAGTCTATTGGACAACCTTTCAACCCGAAGCTCTTTGTCAAAGCCTGACGAAGGGCGCGAGTATCTCTCTGGATAACATGCCTTTGTTTTTTGGGATCCAGCACTTAAAAGTGACTGGATGTGCGTACACTACGTTTGAAGAGTTGAAACTAACCCTTAGCATTCCTTTCCCAGTGTCTTCATGTACTGCAGCAGACGGAATCACTGTGGACACTGTGTTCTGTTTGACTACTGATACTGTGGTCGTAGAACCCCATGTGATTGTATTGGAGTTTCGTACTAGATTTAGTTTCTTGTATCTTCTGCCTCCGGGGCACCTTGGCCACAAGGCTCTCCCTCCGGCTCTTCCACTGTGAGATGTCTGTTGTTTTATTAGGTAGGATACTTATCTTGTGTAGTAATGGGTTCACTGTGAGATGACTGTTGTTTTATTAGGTATAGTAATATTGTATAGTAATGGGTTCACTGTGAGATGTCTGTGGTTTTATTAGGTATAGTAATATTGTATAGTAATGGGTTCACTGTGAGATGTCTGTGGTTTTATTAGGTATAGTAATATTGTATAGTAATTGGTTCACTGTGCATTACACTCAATAGATAACTACTGGCCACCTAATATGATATCTGCACTTTTTACTTTTTGCCACAATCCTTGATATTgtactttttgtgtgtgtgtgtgtgtgtgtgtgcgattcaAAGTTGATAAATGTGTTACATTTAGTTTACTGACAAATGTAGAAAAGTGTTGAATGATAGTAGACTGACGGTATGCTGTTTAATATAGAGCATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATGCTGTTTAATATAGAGCATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAA
>XM_036936696.1
TTCCCTTGGCAACCACTTCCTCCGAGCTCCCAACCCGGCCATCTTTATTTAACTCATTCATGAAAAGTTTTTGTAAGACACTGGAACATTGTTGCATTTGGCTACGCATCTAACGAACCACGGGACACATTGATATTATTTTTGTATCCGCGTGCTCCAGCGTGTGCTACATCGTAGCGTATTTCTGTCACAGCCAAAGTTGGACTGAAAGCGTTAGAATGAGAAAAAAGCAGAATGTGAAACAGAGAAAGGCAGAAAcaataataacaccaacaccattaacaacaacaacgctatcaacaacaacaacagcagcagcagtcgtcCAGGAGTTTGTGGTTGAGAAGATCATCCACCGAAGGGTCTTCAATGGAAGAGTAGAGTACTATCTGAAGTGGAAAGGATTCACCGATGCTGACAACACCTGGGAACCAGAGGACAACTTGGTCTGTCCTGAACTGATAGAAGAGTTCCTGAGAAACCTCTGTTTGTCTGGAGAGAATCAGGTTGAGGAAGAGAACCTACGGCCGGTGGAACCGGAGCTCGTCCCCAAAGAGGAACTGGCAGAACAGGAGACTGAGATTCAGGTGTACAGCGAGCAGAGACATAATGACCTCCAGGAACCTGCTGACCAGGATTCTCCTACTGCCCTCACGTGCCCCCTGGAACCTGAACGCATCATCGGCTCCACAGAAAGACACGGAGAACTCATGTTCCTCATCAAATGGAAGAACCGTGACGAGGTGGCCCTGCTGTCAGCCAGGGAGGCCAGCGCCAGGTATCCTGAGGTGGTTGTAGCCTTCTACGAGGACAAACTCACCTGGCACTCTGGGGACGAGGACCAgtaaaggatgtgtgtgtgtgtgtgtcgtagagtgtgtgtgtgcatgtcagtACACAAGTAGGTATGTGAACTGACAAGCATCTGTAGGCATCTCATAGGTTAATTTCTCCTCCAGAGAACCAAGGTCCTCCTTGAGCTGACATTAAAAGCACAGTGTGTGAAACGATGTCCTGCTGCAGGTAGATTGAGTCATCGTGGCAGGTGTAAAAGCCCTCTACGGGGTCTTCCTGCTTCCTGTGGTGCTGGGTGAGGTCACAATGCCTTTGGGGTGTAGTGCAGCGTGTGGTGGAGTTCAGAACCATTCATAGAgacgtctatctctctctgtggccCTGATTGAGTTGAAACTAATGAAATGAAGGCAGACAGCCTGTTCACACTGATGAATTCTCCCCCCAGTCTATTGGACAACCTTTCAACCCGAAGCTCTTTGTCAAAGCCTGACGAAGGGCGCGAGTATCTCTCTGGATAACATGCCTTTGTTTTTTGGGATCCAGCACTTAAAAGTGACTGGATGTGCGTACACTACGTTTGAAGAGTTGAAACTAACCCTTAGCATTCCTTTCCCAGTGTCTTCATGTACTGCAGCAGACGGAATCACTGTGGACACTGTGTTCTGTTTGACTACTGATACTGTGGTCGTAGAACCCCATGTGATTGTATTGGAGTTTCGTACTAGATTTAGTTTCTTGTATCTTCTGCCTCCGGGGCACCTTGGCCACAAGGCTCTCCCTCCGGCTCTTCCACTGTGAGATGTCTGTTGTTTTATTAGGTAGGATACTTATCTTGTGTAGTAATGGGTTCACTGTGAGATGACTGTTGTTTTATTAGGTATAGTAATATTGTATAGTAATGGGTTCACTGTGAGATGTCTGTGGTTTTATTAGGTATAGTAATATTGTATAGTAATGGGTTCACTGTGAGATGTCTGTGGTTTTATTAGGTATAGTAATATTGTATAGTAATTGGTTCACTGTGCATTACACTCAATAGATAACTACTGGCCACCTAATATGATATCTGCACTTTTTACTTTTTGCCACAATCCTTGATATTgtactttttgtgtgtgtgtgtgtgtgtgtgtgcgattcaAAGTTGATAAATGTGTTACATTTAGTTTACTGACAAATGTAGAAAAGTGTTGAATGATAGTAGACTGACGGTATGCTGTTTAATATAGAGCATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATGCTGTTTAATATAGAGCATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAA

Function

NR:

description
PREDICTED: chromobox protein homolog 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936698.1 False 2741 mRNA 0.42 5 7358905 7369148
XM_036936696.1 True 2743 mRNA 0.42 5 7358906 7369148

Neighbor

gene id symbol gene type direction distance location
pde11al LOC106573285 coding upstream 54196 7282430 ~ 7304709 (+)
LOC110535004 LOC106596209 coding upstream 279828 7067283 ~ 7079077 (+)
LOC110535127 LOC106592104 coding upstream 279930 7030625 ~ 7078975 (+)
mpp6a LOC106594438 coding upstream 364190 6944265 ~ 6994715 (+)
LOC110535156 LOC106606167 coding upstream 414862 6941465 ~ 6944043 (+)
snx10b LOC106593746 coding downstream 195 7369343 ~ 7377095 (+)
tax1bp1b LOC106594183 coding downstream 127035 7496183 ~ 7531274 (+)
creb5b LOC106573409 coding downstream 246762 7615910 ~ 7706660 (+)
chn2 chn2 coding downstream 363809 7732957 ~ 7805441 (+)
plekha8 plekha8 coding downstream 446102 7815250 ~ 7829304 (+)
G110184 NA non-coding upstream 13183 7344697 ~ 7345722 (+)
G110182 NA non-coding upstream 14803 7343731 ~ 7344102 (+)
G110180 NA non-coding upstream 17125 7341445 ~ 7341780 (+)
G110177 NA non-coding upstream 20796 7337746 ~ 7338109 (+)
G110175 NA non-coding upstream 22353 7336344 ~ 7336552 (+)
G110208 NA non-coding downstream 16810 7385958 ~ 7386639 (+)
G110215 NA non-coding downstream 32385 7401533 ~ 7402196 (+)
G110218 NA non-coding downstream 35909 7405057 ~ 7406859 (+)
G110223 NA non-coding downstream 56398 7425546 ~ 7425830 (+)
G110225 NA non-coding downstream 58982 7428130 ~ 7428618 (+)
G109821 NA other upstream 217926 7135247 ~ 7140979 (+)
malsu1 malsu1 other upstream 447700 6908511 ~ 6911256 (+)
rbm24b LOC106596654 other upstream 489929 6855864 ~ 6868976 (+)
G110644 NA other downstream 529448 7898596 ~ 7935137 (+)
G110674 NA other downstream 704218 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1667656 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1852337 9221418 ~ 9229025 (+)

Expression


Co-expression Network