chn2 (chn2)


Basic Information

Item Value
gene id chn2
gene name chn2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7732957 ~ 7805441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936905.1
ACAGATCTGCTTCAGATTGACTGGAGTTCAGAGGTCTCTTTCAGTCTACTGAATACTTCCACTTTAAGAAGGCGGCTCCGTcgcagtgtagtgtgtttatacgATCCCAGAAGTGGCACCACCACATGGAAAACGATACTGTGTTTTTAATTCAACATGGCGAAAGCATATGCCGCTCCTCCAGTGGATACATTTGACAAACTTTAATTGTGTGTACAGTGGTGCGTTTAGACAAGATGATCGAAAGTTGATATTGTTCCTGTCTGactatttttacaccactgccagTGAGTGGAGCTACAGTAAATGCGGCAACATACGGCGCGCAGGGAAAGGAACCGAGAGAAGTGAAGGCGTACTGGAACGTTACACATACAAGAGGAGCAATTTAGAAAACGGACGTGAAATAAACAGTGTTAGTTCGTGCCAAATCAGCGAGTGAGAGTAGCCTACGCTACGTGACATAGTGAGATGGACGGACTACGGGGAACGGGCTGTGAGCGCACCTCAACCGACCGCGAGTGAACAGACCGAGCCTGAAGCGGATTGGGATGGCAGCATCCAGCAACTCAAGCCAGTCGGGTTCATCAGTGTCTTCTGATCCTGAGGATTACCAACCGCCCATATGGAAGTCTTACTTGTACCGGCTCCAGCAGGAAGCTCCTCGGCCCAAGAGGATGACCTGCCCTCAGGAGATGGAGACCAGACCCAAATATTACGGCAGAGAGTTCCATGGCATGCTATCCAGAGAGTCTGCAGATGAGCTACTGGGAGGAGCAGAGGGGGCTTACCTtgtcagagagagccagagacagccAGGGACACACACCTTGGCCTtaaggtttGGGCACCAGACCCTGAACTACAGACTGTTCTATGACGGGAAGCACTTTGTGGGGGAGAAGCGCTTTGAGACGGTCCATGACCTGGTGACGGATGGCCTCATCACCCTGTACATCGAGACCAAGGCAGCAGAGTACATCGCCAAGATGACCACCAACCCCATCTATGAACACCTGGGCTACACATCCCTGCTGAAGGACAAGATGGGGCACCGGCTGAGCCGGAGACGCACTGAACCTCATAGGGTCACCttccagagagaggacaggaagATCACCACTTCTCCTCTGGTACGGCACAGCACCCTGAAAGACTGCCCCTCCGAGAAGCAGAGCTCCTATGACAAGATCCACAACTTCAAGGTTCATACTTTCCGAGGGCCTCACTGGTGCGAGTATTGCGCCAACTTCATGTGGGGCCTCATAGCCCAAGGGGTCCACTGCTCAGACTGTGGGCTGAACGTACACAAGCAGTGTTCCAAGCTGGTGCCCAGCGACTGTCAGCCAGACCTGCACAGGATTAAGAAGGTGTTCAGCTGTGACCTCACTACCCTGGTCAAGGCCCACAACACCACACGGCCCATGGTGGTGGACATGTGTATCAAGGAGATAGAACTAAGAGGTCTGCAGTCTGAGGGCCTCTACAGAGTGTCTGGCTTCTCAGAACACATTGAGGACGTGAGGCTCGCCTTTGACCGAGATGGCGAGAAGGCAGACATCAGTGCCAATGTGTACAACGACATCAACATCATCGCTGGAGCTCTGAAGCTCTATCTGAGAGACCTGCCCATTCCAGTCATCACATTCCACGTGTACTCCAAATTCATACAAGCTGCAAAAATCCCCAACCCAGACACCAGACTGGAGGCCATCCACGAGGGGCTGCTGCAGCTCCCGCCAGCCCACTACGAGACCCTACGCTACCTGATGATGCATCTCAAGAAGGTCACCATGTTTGAAAAGGACAATTTCATGAATTCTGAGAACCTGGGGATTGTGTTTGGTCCGACGTTAATGCAGCCGCCTGAACAGAACGCCCTGGCCACTCTGAACGACATGAGGCATCAGAAACTCATCATACAGCTCCTGATAGAGCATGAAGACGTCTTGTTTTGAAGGACTGTCTGTTGCTGGGTGTAGGATGTTTGATTTATTCCATACCAGAGGAATCTCAAGCCATCATGTCTGTCATCATATGAAGTGTCAAAATGCTATTGTGGTCAGATTTTAGCTTCCATTACTTCTCTCCCATAAGCATGAGTGTTGAAGTTGAGTCTGTGGTACGTCAGTCAGACATCATGTCTTGTTACAGTAAGGTCAAAGGTTGTCACATCCTGCCATATTCTCGTTAAGAGGAACAAGGTACtggatacgtcccaaatggcaccctattttcaTTACTTCTGAAcaggccccatagggctctggttaacagtagtgtacactatatagtgagtagggtgccattttagaaaAAGCAATTGATTCCAACATTTCCACACACCTTTCATGGAGTCAAGTAGCCTAGCGgtaagtgttgggccagtaaacgaaggttgctggtttgaatacccgaaCCGACAAGGTTAAAAATCAGTcaatgtgcctttgagcaaggcacttaaccctaatttgctccagggtcgctgtactaccatggctgaccctgtaaaacaacacatttcactgcccGTTTTCCGGTGTCTGTGacaataaaaacatgtttccatAAATCTAGCATCATCACACTAACACATTCTTCTTGGTTGATGTCTGTCTGTATAGTGATTGTCATGCTCAAGTGTGTTCGTTGTGTGCTTCTTGGTCAATGAGTCTCATGACTCAGTAACTGTGTGATCCTGTAGGGTGAGATATGGATGGATGGTCTATGTATGAAGCACTGTGCTGATCAATTTATTTTGTGAAGATTTCTTTATGTTTTCAGCATCATGTGCTTTTTTTCACC

Function

symbol description
chn2 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction; positive regulation of GTPase activity; and regulation of small GTPase mediated signal transduction. Orthologous to human CHN2 (chimerin 2).

NR:

description
beta-chimaerin

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K20630 CHN1_2, ARHGAP2_3; chimaerin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936905.1 True 2808 mRNA 0.49 13 7732957 7805441

Neighbor

gene id symbol gene type direction distance location
creb5b LOC106573409 coding upstream 26297 7615910 ~ 7706660 (+)
tax1bp1b LOC106594183 coding upstream 201683 7496183 ~ 7531274 (+)
snx10b LOC106593746 coding upstream 355862 7369343 ~ 7377095 (+)
cbx3b LOC106573104 coding upstream 363809 7358905 ~ 7369148 (+)
pde11al LOC106573285 coding upstream 428248 7282430 ~ 7304709 (+)
plekha8 plekha8 coding downstream 9809 7815250 ~ 7829304 (+)
LOC110514761 LOC106597212 coding downstream 24782 7830223 ~ 7857449 (+)
LOC100136727 LOC100136727 coding downstream 163657 7969098 ~ 7971187 (+)
LOC118937630 LOC100136727 coding downstream 180387 7985828 ~ 7988121 (+)
LOC118937631 LOC100136727 coding downstream 201390 8006831 ~ 8014142 (+)
G110322 NA non-coding upstream 18771 7713124 ~ 7714186 (+)
G110330 NA non-coding upstream 20674 7711599 ~ 7712283 (+)
G110324 NA non-coding upstream 23255 7709167 ~ 7709702 (+)
G110332 NA non-coding upstream 25097 7706940 ~ 7707860 (+)
G110383 NA non-coding upstream 31254 7701499 ~ 7701703 (+)
G110329 NA non-coding downstream 4103 7809544 ~ 7809989 (+)
G110405 NA non-coding downstream 33043 7838484 ~ 7839533 (+)
G110409 NA non-coding downstream 43703 7849144 ~ 7851587 (+)
G110642 NA non-coding downstream 66317 7871758 ~ 7872286 (+)
G110646 NA non-coding downstream 74419 7879860 ~ 7904188 (+)
G109821 NA other upstream 591978 7135247 ~ 7140979 (+)
LOC110535156 LOC106606167 other upstream 789874 6941465 ~ 6944043 (+)
malsu1 malsu1 other upstream 821752 6908511 ~ 6911256 (+)
G110644 NA other downstream 93155 7898596 ~ 7935137 (+)
G110674 NA other downstream 267925 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1231363 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1416044 9221418 ~ 9229025 (+)
G111453 NA other downstream 1524828 9330269 ~ 9331616 (+)

Expression


Co-expression Network