XLOC_002052 (vsig8a)


Basic Information

Item Value
gene id XLOC_002052
gene name vsig8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19525839 ~ 19551118 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003975
TTGTTGTCTCACAGTGAAGCCATTCAGATGGTGAAGACTAAACCTAAGAGATGAACGGGCCCTCCATCTTCTCTTTTCATTTCCAGGCTTAAGCGTGTTTCTTCAAGACTTCAATCTGCTGAATGGGAGAAAGTGGCACAAAAAGCCCTGTCCAAACATGAATGTACAAAATCGCTGCTGCAACAAAAGATGTCGAAAATGGCCTTGCGTTACACGAACAAGTTTGTCCCCGTCGTCCTCATTTATGATATTGACTGTGTTCATCCTGTTTCTCAAAGCAAACGTGGCAGTGGCGATGAAAGTGACCTCCAGTGGCCCGCAGACGATGCAAATGGCTCAAGGAGAATCTGTTACACTAGACTGCACCTACTCGTCTGGTCCAGCAGACACAGGAGAGCTTGACATTGAGTGGTCAGTCATCAGCCCAGACACCACCAAAAAAGACCAGATGATCATATCATACACAGGAGGAAGGCGATATACTTATGGCGACCCTGCTTTGATGAAAGGTCTGGACTTCACTGCTCCAGATCCTGGTCAAGGAGATGCGTCTCTGTCTATAGCCTCTCTGACTGACAGTCATGCTGGAACATATCAGTGCAAGGTCAAAAAGGCACCAGGGGTTGACAGCCGCAAAATATCACTAGTTGTGATGGTGAGACCGTCTGTGCCGAATTGCTGGATTGATGGCGGTGGAGGAGTGGGTGAAGCGGCGTCTCTCCGCTGCAGATCAGACGAGGGCTCCGCGCCGCTGCTGTACTCATGGAGGAGAGAGAGCGGAGGAGCGATTCCTGCAGACGCCACTCAGAaTTCCCTCACGGGAGAACTTCTGATCAGTAATCTCTCCACAAGTCACACCGGTGTGTATTCCTGCGAGGTTTCCAATGCTGTAGGGAAAGAAAGCTGCCGACTAACCCTTCAAGCTGTAAAGCCTCCTAATAGAGCAGGAGTGATAACAGGCACTGTTGTTGGCTGTTTACTACTCATCATGATCGTCCTGCTCATTATCTGGCTCCTCGTCTTCAGATGTAACTGGAATCGACAGGAGAAAGAGTTCTCGAATGAGATTAGAGAGGACGCTCCTGCACCTGAGAGTCGCCCAAACAGCCGAGTCTCCAGCTTCCGCTCAGGTGTGGCCTACAGTCAGGTGGGACAAACACAAAATGAACATCCAACCTCCAGCAACACCAGCTACAGCACGGCAAAATATGACAGCAGATTTGGTTATGCTGTGTGAGAGACTGTAAGTCACAGTGGTATCGATGTGCAGCAGAGAGGAAAATATATCAAGTGACTGTAGTAAAAATGTTagcaaaaatgaacaaaactgcCCCAAAAAATCTAGAAAAGGAGGTAAAACAACACTGCAAATCTGTATGTTTGTCACAAGCAAAGTGAAATATTTGCTGTATTACATTTAGATCAATGCACATTGcatcagatttgtgtgtgtgtgcgtgtgtgtgtgtgcgcgcagagTTTTGAGCAGAAATTCTCTTATCTTATGAACATTAACAAGCAGATACAATGTAAGACATTCATTTATTGACTATAACTTGCTTGAGTTAAATGATTATTGGTTCTTGCATAACTTGTGCTGGACTAGCATCATTGACTGGTATGTTTTGTCTGTATAGCCAGAATATGACATTCCGTTTCACACGGTACAAACTGTGTTTAACATGTATTATATTAATCAACATTCATAATCATAGCTAAAGTGTAGTAACTAGACTTTTGGTCAAAATTGAGTTAAAGCCTAAAATGGATTAGTGACATCTGTTGAACTCTCCTGGTTCAATTTTATCctgattcagaaaaaaacaagagtGTCAAAACTGCAGTAACTACAAAACCCAAGctgatgtaaaaaaacaaaagaaaacatctgAATGGCTGCAACCCTGCAATGTATAGCCATTATATATTATGCataatttatattagtcttttcaACAGAATGTTAATACATTTTCATTGAAATGTTTTTTGATTGTGCACTgacacaaatacatttaataatacatttcattCACATAGCTCctataaatgtacaaaaatggaACTGAAAAGAAATACTATagtacaaaatataatgaaatGTTGCTATTAATGACCCTCAGTTATCTAAGAGTTACAgcatgtgacttttttttcttaatgaattGTCGGGAGCCATTTATTTCAATTAAGTTTtgtctgtgtatgtttttttaaacTCTGAAAGTGCGTTAGCCATTGCCTTGTCCACAGTTTTGGCTACGAATAATTTTTAATCTTCTATTGAAGAAACACTTAAACAGTCTCTTAAATggattttaatgtaattaacttTTTGACTATAAAATGCTTTGCATTCAGTCATGTTGCAATATAATGTATGAAATCaaaatgtgtttgtaaatgtaattattttctaatGTGATAAGGATTCATATGAGTGAAGCatacattatgaattaaattacgCAAAACCAGATACTGATCATATCAGGCAATATTAGTAGCTTTTTAAAAAGGCCTAATGGTAATATTTGTTTGTGAGGAGAGCCTTAATTGTTGacgtttttttaaacatgatgtaacttcatttatattatttcccATGAGATTTAAAGGTTTATGTGATGACTGAAAATGaactttgtgttttgttgtttttaaacaatgtctgctatgctttttttcttcttttttttttgcttatttgctGATATTAGGGTTTTTTGTACAAGAACAAAGTTTGGATGGATTTGTGTGTGACTATGAAATAATTAGTTGTTTTCTTCAGCATTTCTGGAACTAATATTTGCTGATGTTATACTGATAGGTTGAATTTTTatgaattgtaataaaaaatgaagaaaacgTG
>TCONS_00003974
TTGTTGTCTCACAGTGAAGCCATTCAGATGGTGAAGACTAAACCTAAGAGATGAACGGGCCCTCCATCTTCTCTTTTCATTTCCAGGCTTAAGCGTGTTTCTTCAAGACTTCAATCTGCTGAATGGGAGAAAGTGGCACAAAAAGCCCTGTCCAAACATGAATGTACAAAATCGCTGCTGCAACAAAAGATGTCGAAAATGGCCTTGCGTTACACGAACAAGTTTGTCCCCGTCGTCCTCATTTATGATATTGACTGTGTTCATCCTGTTTCTCAAAACGTGGCAGTGGCGATGAAAGTGACCTCCAGTGGCCCGCAGACGATGCAAATGGCTCAAGGAGAATCTGTTACACTAGACTGCACCTACTCGTCTGGTCCAGCAGACACAGGAGAGCTTGACATTGAGTGGTCAGTCATCAGCCCAGACACCACCAAAAAAGACCAGATGATCATATCATACACAGGAGGAAGGCGATATACTTATGGCGACCCTGCTTTGATGAAAGGTCTGGACTTCACTGCTCCAGATCCTGGTCAAGGAGATGCGTCTCTGTCTATAGCCTCTCTGACTGACAGTCATGCTGGAACATATCAGTGCAAGGTCAAAAAGGCACCAGGGGTTGACAGCCGCAAAATATCACTAGTTGTGATGGTGAGACCGTCTGTGCCGAATTGCTGGATTGATGGCGGTGGAGGAGTGGGTGAAGCGGCGTCTCTCCGCTGCAGATCAGACGAGGGCTCCGCGCCGCTGCTGTACTCATGGAGGAGAGAGAGCGGAGGAGCGATTCCTGCAGACGCCACTCAGAaTTCCCTCACGGGAGAACTTCTGATCAGTAATCTCTCCACAAGTCACACCGGTGTGTATTCCTGCGAGGTTTCCAATGCTGTAGGGAAAGAAAGCTGCCGACTAACCCTTCAAGCTGTAAAGCCTCCTAATAGAGCAGGAGTGATAACAGGCACTGTTGTTGGCTGTTTACTACTCATCATGATCGTCCTGCTCATTATCTGGCTCCTCGTCTTCAGATGTAACTGGAATCGACAGGAGAAAGAGTTCTCGAATGAGATTAGAGAGGACGCTCCTGCACCTGAGAGTCGCCCAAACAGCCGAGTCTCCAGCTTCCGCTCAGGTGTGGCCTACAGTCAGGTGGGACAAACACAAAATGAACATCCAACCTCCAGCAACACCAGCTACAGCACGGCAAAATATGACAGCAGATTTGGTTATGCTGTGTGAGAGACTGTAAGTCACAGTGGTATCGATGTGCAGCAGAGAGGAAAATATATCAAGTGACTGTAGTAAAAATGTTagcaaaaatgaacaaaactgcCCCAAAAAATCTAGAAAAGGAGGTAAAACAACACTGCAAATCTGTATGTTTGTCACAAGCAAAGTGAAATATTTGCTGTATTACATTTAGATCAATGCACATTGcatcagatttgtgtgtgtgtgcgtgtgtgtgtgtgcgcgcagagTTTTGAGCAGAAATTCTCTTATCTTATGAACATTAACAAGCAGATACAATGTAAGACATTCATTTATTGACTATAACTTGCTTGAGTTAAATGATTATTGGTTCTTGCATAACTTGTGCTGGACTAGCATCATTGACTGGTATGTTTTGTCTGTATAGCCAGAATATGACATTCCGTTTCACACGGTACAAACTGTGTTTAACATGTATTATATTAATCAACATTCATAATCATAGCTAAAGTGTAGTAACTAGACTTTTGGTCAAAATTGAGTTAAAGCCTAAAATGGATTAGTGACATCTGTTGAACTCTCCTGGTTCAATTTTATCctgattcagaaaaaaacaagagtGTCAAAACTGCAGTAACTACAAAACCCAAGctgatgtaaaaaaacaaaagaaaacatctgAATGGCTGCAACCCTGCAATGTATAGCCATTATATATTATGCataatttatattagtcttttcaACAGAATGTTAATACATTTTCATTGAAATGTTTTTTGATTGTGCACTgacacaaatacatttaataatacatttcattCACATAGCTCctataaatgtacaaaaatggaACTGAAAAGAAATACTATagtacaaaatataatgaaatGTTGCTATTAATGACCCTCAGTTATCTAAGAGTTACAgcatgtgacttttttttcttaatgaattGTCGGGAGCCATTTATTTCAATTAAGTTTtgtctgtgtatgtttttttaaacTCTGAAAGTGCGTTAGCCATTGCCTTGTCCACAGTTTTGGCTACGAATAATTTTTAATCTTCTATTGAAGAAACACTTAAACAGTCTCTTAAATggattttaatgtaattaacttTTTGACTATAAAATGCTTTGCATTCAGTCATGTTGCAATATAATGTATGAAATCaaaatgtgtttgtaaatgtaattattttctaatGTGATAAGGATTCATATGAGTGAAGCatacattatgaattaaattacgCAAAACCAGATACTGATCATATCAGGCAATATTAGTAGCTTTTTAAAAAGGCCTAATGGTAATATTTGTTTGTGAGGAGAGCCTTAATTGTTGacgtttttttaaacatgatgtaacttcatttatattatttcccATGAGATTTAAAGGTTTATGTGATGACTGAAAATGaactttgtgttttgttgtttttaaacaatgtctgctatgctttttttcttcttttttttttgcttatttgctGATATTAGGGTTTTTTGTACAAGAACAAAGTTTGGATGGATTTGTGTGTGACTATGAAATAATTAGTTGTTTTCTTCAGCATTTCTGGAACTAATATTTGCTGATGTTATACTGATAGGTTGAATTTTTatgaattgtaataaaaaatgaagaaaacgTG
>TCONS_00003976
TTCACAGATGTCGAAAATGGCCTTGCGTTACACGAACAAGTTTGTCCCCGTCGTCCTCATTTATGATATTGACTGTGTTCATCCTGTTTCTCAAAACGTGGCAGTGGCGATGAAAGTGACCTCCAGTGGCCCGCAGACGATGCAAATGGCTCAAGGAGAATCTGTTACACTAGACTGCACCTACTCGTCTGGTCCAGCAGACACAGGAGAGCTTGACATTGAGTGGTCAGTCATCAGCCCAGACACCACCAAAAAAGACCAGATGATCATATCATACACAGGAGGAAGGCGATATACTTATGGCGACCCTGCTTTGATGAAAGGTCTGGACTTCACTGCTCCAGATCCTGGTCAAGGAGATGCGTCTCTGTCTATAGCCTCTCTGACTGACAGTCATGCTGGAACATATCAGTGCAAGGTCAAAAAGGCACCAGGGGTTGACAGCCGCAAAATATCACTAGTTGTGATGGTGAGACCGTCTGTGCCGAATTGCTGGATTGATGGCGGTGGAGGAGTGGGTGAAGCGGCGTCTCTCCGCTGCAGATCAGACGAGGGCTCCGCGCCGCTGCTGTACTCATGGAGGAGAGAGAGCGGAGGAGCGATTCCTGCAGACGCCACTCAGAaTTCCCTCACGGGAGAACTTCTGATCAGTAATCTCTCCACAAGTCACACCGGTGTGTATTCCTGCGAGGTTTCCAATGCTGTAGGGAAAGAAAGCTGCCGACTAACCCTTCAAGCTGTAAAGCCTCCTAATAGAGCAGGAGTGATAACAGGCACTGTTGTTGGCTGTTTACTACTCATCATGATCGTCCTGCTCATTATCTGGCTCCTCGTCTTCAGATGTAACTGGAATCGACAGGAGAAAGAGTTCTCGAATGAGATTAGAGAGGACGCTCCTGCACCTGAGAGTCGCCCAAACAGCCGAGTCTCCAGCTTCCGCTCAGGTGTGGCCTACAGTCAGGTGGGACAAACACAAAATGAACATCCAACCTCCAGCAACACCAGCTACAGCACGGCAAAATATGACAGCAGATTTGGTTATGCTGTGTGA

Function

symbol description
vsig8a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSIG8 (V-set and immunoglobulin domain containing 8).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-338 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSIG8 (V-set and immunoglobulin domain containing 8).

Ensembl:

ensembl_id ENSDARG00000054050

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003975 False 2872 mRNA 0.39 9 19525839 19551118
TCONS_00003974 False 2868 mRNA 0.39 9 19525839 19551118
TCONS_00003976 True 1051 mRNA 0.51 7 19528321 19549483

Neighbor

gene id symbol gene type direction distance location
XLOC_002051 lrrtm4l1 coding upstream 131348 19310688 ~ 19394491 (+)
XLOC_002050 igsf9a coding upstream 432031 19026988 ~ 19093808 (+)
XLOC_002049 tmem230a coding upstream 504263 19017146 ~ 19021576 (+)
XLOC_002048 dpysl2b coding upstream 533368 18952271 ~ 18992471 (+)
XLOC_002047 bnip3lb coding upstream 589894 18911152 ~ 18935945 (+)
XLOC_002053 atp6v1b2 coding downstream 3486 19554604 ~ 19566474 (+)
XLOC_002054 CABZ01059627.1 coding downstream 17934 19569052 ~ 19570346 (+)
XLOC_002055 CABZ01059627.2 coding downstream 22673 19573791 ~ 19575962 (+)
XLOC_002056 CABZ01059627.3 coding downstream 32171 19583289 ~ 19589733 (+)
XLOC_002057 zgc:173837 coding downstream 43891 19595009 ~ 19598009 (+)
XLOC_002045 AL928714.1 non-coding upstream 723404 18798927 ~ 18802435 (+)
XLOC_002043 NA non-coding upstream 1243404 18240550 ~ 18282435 (+)
XLOC_002042 NA non-coding upstream 1454333 18007123 ~ 18071506 (+)
XLOC_002040 BX927277.1 non-coding upstream 1635636 17890089 ~ 17890203 (+)
XLOC_002035 dre-mir-218b non-coding upstream 1830499 17695265 ~ 17695340 (+)
XLOC_002058 CABZ01059623.1 non-coding downstream 51216 19602334 ~ 19725594 (+)
XLOC_002063 NA non-coding downstream 825970 20377088 ~ 20381313 (+)
XLOC_002065 NA non-coding downstream 897349 20448467 ~ 20452630 (+)
XLOC_002066 NA non-coding downstream 950658 20501776 ~ 20502178 (+)

Expression


Co-expression Network