LOC100136727 (LOC100136727)


Basic Information

Item Value
gene id LOC100136727
gene name LOC100136727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7969098 ~ 7971187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124687.1
acctgttgataacacagactattttcatgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagagtatttagagaccaatgaagtagaatcccaagcttctccaaaccatggtagctctccggcaaattatgccctgtcctctgaggagaagctgaggcgcgtgtcctcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgcca

Function

NR:

description
polysialoglycoprotein precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124687.1 True 1644 mRNA 0.67 4 7969098 7971187

Neighbor

gene id symbol gene type direction distance location
LOC110514761 LOC106597212 coding upstream 111649 7830223 ~ 7857449 (+)
plekha8 plekha8 coding upstream 139794 7815250 ~ 7829304 (+)
chn2 chn2 coding upstream 163657 7732957 ~ 7805441 (+)
creb5b LOC106573409 coding upstream 262438 7615910 ~ 7706660 (+)
tax1bp1b LOC106594183 coding upstream 437824 7496183 ~ 7531274 (+)
LOC118937630 LOC100136727 coding downstream 14641 7985828 ~ 7988121 (+)
LOC118937631 LOC100136727 coding downstream 35644 8006831 ~ 8014142 (+)
LOC118937632 LOC100136727 coding downstream 47091 8018278 ~ 8020571 (+)
LOC118937633 LOC100136727 coding downstream 54783 8025970 ~ 8028263 (+)
LOC110516794 LOC100136727 coding downstream 62003 8033190 ~ 8040571 (+)
G110646 NA non-coding upstream 64910 7879860 ~ 7904188 (+)
G110642 NA non-coding upstream 96812 7871758 ~ 7872286 (+)
G110409 NA non-coding upstream 117511 7849144 ~ 7851587 (+)
G110405 NA non-coding upstream 129565 7838484 ~ 7839533 (+)
G110329 NA non-coding upstream 159109 7809544 ~ 7809989 (+)
G110673 NA non-coding downstream 84388 8055575 ~ 8138469 (+)
G110702 NA non-coding downstream 158574 8129761 ~ 8132133 (+)
G110751 NA non-coding downstream 302804 8273991 ~ 8274437 (+)
G110717 NA non-coding downstream 313123 8284310 ~ 8329229 (+)
G110900 NA non-coding downstream 368724 8339911 ~ 8340121 (+)
G110644 NA other upstream 33961 7898596 ~ 7935137 (+)
pde11al LOC106573285 other upstream 664453 7282430 ~ 7304709 (+)
G109821 NA other upstream 828119 7135247 ~ 7140979 (+)
LOC110535156 LOC106606167 other upstream 1026015 6941465 ~ 6944043 (+)
G110674 NA other downstream 102179 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1065617 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1250298 9221418 ~ 9229025 (+)
G111453 NA other downstream 1359082 9330269 ~ 9331616 (+)
G111788 NA other downstream 1469122 9440309 ~ 9444041 (+)

Expression


Co-expression Network