LOC118937630 (LOC100136727)


Basic Information

Item Value
gene id LOC118937630
gene name LOC100136727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7985828 ~ 7988121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936997.1
atgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagagtatttagagaccaatgaagtagaatcccaagcttctccaaaccatggtagctctccggcaaatgatgccctgtcctctgaggagaagctgaggcgcatgtcctcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgac

Function

NR:

description
apopolysialoglycoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936997.1 True 1848 mRNA 0.68 4 7985828 7988121

Neighbor

gene id symbol gene type direction distance location
LOC100136727 LOC100136727 coding upstream 14641 7969098 ~ 7971187 (+)
LOC110514761 LOC106597212 coding upstream 128379 7830223 ~ 7857449 (+)
plekha8 plekha8 coding upstream 156524 7815250 ~ 7829304 (+)
chn2 chn2 coding upstream 180387 7732957 ~ 7805441 (+)
creb5b LOC106573409 coding upstream 279168 7615910 ~ 7706660 (+)
LOC118937631 LOC100136727 coding downstream 18710 8006831 ~ 8014142 (+)
LOC118937632 LOC100136727 coding downstream 30157 8018278 ~ 8020571 (+)
LOC118937633 LOC100136727 coding downstream 37849 8025970 ~ 8028263 (+)
LOC110516794 LOC100136727 coding downstream 45069 8033190 ~ 8040571 (+)
LOC118936929 LOC100136727 coding downstream 62289 8050410 ~ 8053030 (+)
G110660 NA non-coding upstream 4679 7912531 ~ 7981149 (+)
G110646 NA non-coding upstream 81640 7879860 ~ 7904188 (+)
G110642 NA non-coding upstream 113542 7871758 ~ 7872286 (+)
G110409 NA non-coding upstream 134241 7849144 ~ 7851587 (+)
G110405 NA non-coding upstream 146295 7838484 ~ 7839533 (+)
G110673 NA non-coding downstream 67454 8055575 ~ 8138469 (+)
G110702 NA non-coding downstream 141640 8129761 ~ 8132133 (+)
G110751 NA non-coding downstream 285870 8273991 ~ 8274437 (+)
G110717 NA non-coding downstream 296189 8284310 ~ 8329229 (+)
G110900 NA non-coding downstream 351790 8339911 ~ 8340121 (+)
G110644 NA other upstream 50691 7898596 ~ 7935137 (+)
pde11al LOC106573285 other upstream 681183 7282430 ~ 7304709 (+)
G109821 NA other upstream 844849 7135247 ~ 7140979 (+)
LOC110535156 LOC106606167 other upstream 1042745 6941465 ~ 6944043 (+)
G110674 NA other downstream 85245 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1048683 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1233364 9221418 ~ 9229025 (+)
G111453 NA other downstream 1342148 9330269 ~ 9331616 (+)
G111788 NA other downstream 1452188 9440309 ~ 9444041 (+)

Expression


Co-expression Network