LOC118937631 (LOC100136727)


Basic Information

Item Value
gene id LOC118937631
gene name LOC100136727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8006831 ~ 8014142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937004.1
atgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagagtatttagagaccaatgaagtagaatcccaagcttctccaaaccatggtagctctccggcaaatgatgccctgtcctctgaggagaagctgaggcgcgtgtcctcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgcgcgtgtcctcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccatggatatctga

Function

NR:

description
apopolysialoglycoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937004.1 True 1872 mRNA 0.68 5 8006831 8014142

Neighbor

gene id symbol gene type direction distance location
LOC118937630 LOC100136727 coding upstream 18710 7985828 ~ 7988121 (+)
LOC100136727 LOC100136727 coding upstream 35644 7969098 ~ 7971187 (+)
LOC110514761 LOC106597212 coding upstream 149382 7830223 ~ 7857449 (+)
plekha8 plekha8 coding upstream 177527 7815250 ~ 7829304 (+)
chn2 chn2 coding upstream 201390 7732957 ~ 7805441 (+)
LOC118937632 LOC100136727 coding downstream 4136 8018278 ~ 8020571 (+)
LOC118937633 LOC100136727 coding downstream 11828 8025970 ~ 8028263 (+)
LOC110516794 LOC100136727 coding downstream 19048 8033190 ~ 8040571 (+)
LOC118936929 LOC100136727 coding downstream 36268 8050410 ~ 8053030 (+)
LOC118936503 LOC106605709 coding downstream 118297 8132439 ~ 8159036 (+)
G110660 NA non-coding upstream 25682 7912531 ~ 7981149 (+)
G110646 NA non-coding upstream 102643 7879860 ~ 7904188 (+)
G110642 NA non-coding upstream 134545 7871758 ~ 7872286 (+)
G110409 NA non-coding upstream 155244 7849144 ~ 7851587 (+)
G110405 NA non-coding upstream 167298 7838484 ~ 7839533 (+)
G110673 NA non-coding downstream 41433 8055575 ~ 8138469 (+)
G110702 NA non-coding downstream 115619 8129761 ~ 8132133 (+)
G110751 NA non-coding downstream 259849 8273991 ~ 8274437 (+)
G110717 NA non-coding downstream 270168 8284310 ~ 8329229 (+)
G110900 NA non-coding downstream 325769 8339911 ~ 8340121 (+)
G110644 NA other upstream 71694 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 300342 7615910 ~ 7706660 (+)
pde11al LOC106573285 other upstream 702186 7282430 ~ 7304709 (+)
G109821 NA other upstream 865852 7135247 ~ 7140979 (+)
LOC110535156 LOC106606167 other upstream 1063748 6941465 ~ 6944043 (+)
G110674 NA other downstream 59224 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1022662 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1207343 9221418 ~ 9229025 (+)
G111453 NA other downstream 1316127 9330269 ~ 9331616 (+)
G111788 NA other downstream 1426167 9440309 ~ 9444041 (+)

Expression


Co-expression Network