LOC110516794 (LOC100136727)


Basic Information

Item Value
gene id LOC110516794
gene name LOC100136727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8033190 ~ 8040571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937027.1
atgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagagtatttagagaccaatgaagtagaatcccaagcttctccaaaccatggtagctctccggcaaatgatgccctgtcctctgaggagaagctgaggcgcgtgtcctcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccGCGCATGTCCTCGgacgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgtagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccatggatatctga

Function

NR:

description
apopolysialoglycoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937027.1 True 1872 mRNA 0.68 5 8033190 8040571

Neighbor

gene id symbol gene type direction distance location
LOC118937633 LOC100136727 coding upstream 4927 8025970 ~ 8028263 (+)
LOC118937632 LOC100136727 coding upstream 12619 8018278 ~ 8020571 (+)
LOC118937631 LOC100136727 coding upstream 19048 8006831 ~ 8014142 (+)
LOC118937630 LOC100136727 coding upstream 45069 7985828 ~ 7988121 (+)
LOC100136727 LOC100136727 coding upstream 62003 7969098 ~ 7971187 (+)
LOC118936929 LOC100136727 coding downstream 9839 8050410 ~ 8053030 (+)
LOC118936503 LOC106605709 coding downstream 91868 8132439 ~ 8159036 (+)
LOC110514591 LOC106595161 coding downstream 164529 8205100 ~ 8327730 (+)
LOC118944039 NA coding downstream 195332 8235903 ~ 8262731 (+)
LOC118936502 LOC106574003 coding downstream 439945 8480516 ~ 8505603 (+)
G110660 NA non-coding upstream 52041 7912531 ~ 7981149 (+)
G110646 NA non-coding upstream 129002 7879860 ~ 7904188 (+)
G110642 NA non-coding upstream 160904 7871758 ~ 7872286 (+)
G110409 NA non-coding upstream 181603 7849144 ~ 7851587 (+)
G110405 NA non-coding upstream 193657 7838484 ~ 7839533 (+)
G110673 NA non-coding downstream 15004 8055575 ~ 8138469 (+)
G110702 NA non-coding downstream 89190 8129761 ~ 8132133 (+)
G110751 NA non-coding downstream 233420 8273991 ~ 8274437 (+)
G110717 NA non-coding downstream 243739 8284310 ~ 8329229 (+)
G110900 NA non-coding downstream 299340 8339911 ~ 8340121 (+)
G110644 NA other upstream 98053 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 326701 7615910 ~ 7706660 (+)
pde11al LOC106573285 other upstream 728545 7282430 ~ 7304709 (+)
G109821 NA other upstream 892211 7135247 ~ 7140979 (+)
LOC110535156 LOC106606167 other upstream 1090107 6941465 ~ 6944043 (+)
G110674 NA other downstream 32795 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 996233 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1180914 9221418 ~ 9229025 (+)
G111453 NA other downstream 1289698 9330269 ~ 9331616 (+)
G111788 NA other downstream 1399738 9440309 ~ 9444041 (+)

Expression


Co-expression Network