LOC118936929 (LOC100136727)


Basic Information

Item Value
gene id LOC118936929
gene name LOC100136727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8050410 ~ 8053030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934583.1
atgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagagtatttagagaccaatgaagtagaatcccaagcttctccaaaccatggtagctctccggcaaatgatgccctgtcctctgaggagaagctgaggcgcgtgtcctcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgacaggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccgctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccatggatatctga

Function

NR:

description
apopolysialoglycoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934583.1 True 1872 mRNA 0.68 5 8050410 8053030

Neighbor

gene id symbol gene type direction distance location
LOC110516794 LOC100136727 coding upstream 9839 8033190 ~ 8040571 (+)
LOC118937633 LOC100136727 coding upstream 22147 8025970 ~ 8028263 (+)
LOC118937632 LOC100136727 coding upstream 29839 8018278 ~ 8020571 (+)
LOC118937631 LOC100136727 coding upstream 36268 8006831 ~ 8014142 (+)
LOC118937630 LOC100136727 coding upstream 62289 7985828 ~ 7988121 (+)
LOC118936503 LOC106605709 coding downstream 79409 8132439 ~ 8159036 (+)
LOC110514591 LOC106595161 coding downstream 152070 8205100 ~ 8327730 (+)
LOC118944039 NA coding downstream 182873 8235903 ~ 8262731 (+)
LOC118936502 LOC106574003 coding downstream 427486 8480516 ~ 8505603 (+)
LOC118937640 NA coding downstream 574741 8627771 ~ 8645961 (+)
G110660 NA non-coding upstream 69261 7912531 ~ 7981149 (+)
G110646 NA non-coding upstream 146222 7879860 ~ 7904188 (+)
G110642 NA non-coding upstream 178124 7871758 ~ 7872286 (+)
G110409 NA non-coding upstream 198823 7849144 ~ 7851587 (+)
G110405 NA non-coding upstream 210877 7838484 ~ 7839533 (+)
G110673 NA non-coding downstream 2545 8055575 ~ 8138469 (+)
G110702 NA non-coding downstream 76731 8129761 ~ 8132133 (+)
G110751 NA non-coding downstream 220961 8273991 ~ 8274437 (+)
G110717 NA non-coding downstream 231280 8284310 ~ 8329229 (+)
G110900 NA non-coding downstream 286881 8339911 ~ 8340121 (+)
G110644 NA other upstream 115273 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 343921 7615910 ~ 7706660 (+)
pde11al LOC106573285 other upstream 745765 7282430 ~ 7304709 (+)
G109821 NA other upstream 909431 7135247 ~ 7140979 (+)
LOC110535156 LOC106606167 other upstream 1107327 6941465 ~ 6944043 (+)
G110674 NA other downstream 20336 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 983774 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1168455 9221418 ~ 9229025 (+)
G111453 NA other downstream 1277239 9330269 ~ 9331616 (+)
G111788 NA other downstream 1387279 9440309 ~ 9444041 (+)

Expression


Co-expression Network