LOC100136714 (twst2)


Basic Information

Item Value
gene id LOC100136714
gene name twst2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8393785 ~ 8395476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586317.2
CGCTTGTCTGTCTTCTAACTGAGGGGTGATGTCTGAGGAAATGACCGGGGAAGAGTCGAGCTCCCCAGGCTCTCCACTAGACAGTCTCGGCAACAGTGAGGGGGAACTGGATAGGCAACCGAAGAGATGTGGGAGGAAAAGGACATCAAGCAGGAAAAACGGGGAGGATTCAGATAGCCCTACCCCTGGGAAAAGAGGGAAAAAGTCAAGCAGCAGCAGTCCACATTCTTTCGAAGACCTACAGACGCAACGAGTCATGGCGAACGTGCGCGAGCGGCAGAGGACGCAGTCACTCAACGAAGCTTTCTCGTCTTTGCGGAAAATCATCCCCACTTTGCCTTCAGACAAACTGAGCAAAATACAAACCTTAAAACTTGCTGCCAGGTACATCGATTTCCTGTACCAAGTTCTGCAGAGCGATGAATTGGACTCCAAAATGGTGACAGCTGATTCTGCTTATCAGTATGACAACGGGGCAATTCTGGAGAATAATGCTGGAAACACACAAAGCTGCGGTTTATGGGAGCAAACTTTGACAACCATTTAAAACCAAAAAGGACAGGGCGTGGGGAGAGCACTTTGCCTGGGAAAGGCCCGCGTTTGGACGACCTGGATCTGCATTCGAGTGCTAggctactacactactacattcTGAAATACGTTAGTTTTTTTATTGTTGACGACGAATGTTACTTGGAAATGTATGTTTTCATGCATGTCTTTGACTCTGTGGACAGTATTCTGTGGAGGTTAAAGGGCAGCATCGACGCATTTGTCTCAGTTTCCGTGTGAGACTTTCGATGTGGACTGACTGCGGTATTATAGGCTAATGGGTTGAAATAATGTGTCGCCAACCTGTGCAAAAATAATTGAGGTTATTCTTTTCagaatacatttatttatttattgatgaCACGTGTTACATGAGGAATAGATCCTATGTCTGAAATGCATTCCTATTTTTATTATTGTTGTGTAAATAATTGTATATTTTCCGCAATAAAGTAAATGATAAAACAAAACAA
>XM_021586325.2
ATACTTTATTggccaatcctctctctctccaaatcttTACGCCATACAGGCTATAAGAACTCCGTAACTTTCTCAAGTATCAGAAAACATTTCTTGTCTCGGGATCCCATGTATGGATACTTTATTATTGGTGTCTTCAAAGGCGGTGAATCGAAGGCGCAACTGGAAATAACCGTTAACTTGATGCGTGGATCATTCGGACTGACTGTCGCTTGTCTGTCTTCTAACTGAGGGGTGATGTCTGAGGAAATGACCGGGGAAGAGTCGAGCTCCCCAGGCTCTCCACTAGACAGTCTCGGCAACAGTGAGGGGGAACTGGATAGGCAACCGAAGAGATGTGGGAGGAAAAGGACATCAAGCAGGAAAAACGGGGAGGATTCAGATAGCCCTACCCCTGGGAAAAGAGGGAAAAAGTCAAGCAGCAGCAGTCCACATTCTTTCGAAGACCTACAGACGCAACGAGTCATGGCGAACGTGCGCGAGCGGCAGAGGACGCAGTCACTCAACGAAGCTTTCTCGTCTTTGCGGAAAATCATCCCCACTTTGCCTTCAGACAAACTGAGCAAAATACAAACCTTAAAACTTGCTGCCAGGTACATCGATTTCCTGTACCAAGTTCTGCAGAGCGATGAATTGGACTCCAAAATGGCAAGTTGTAGTTATGTGGCTCATGAGAGATTAAGCTATGCGTTTTCTGTGTGGAGGATGGAGGGCGCTTGGTCCATGTCAGCATCTCACTAGCTCACGGCCGAAGAGCTGTAGTCCAAAATGGTGACAGCTGATTCTGCTTATCAGTATGACAACGGGGCAATTCTGGAGAATAATGCTGGAAACACACAAAGCTGCGGTTTATGGGAGCAAACTTTGACAACCATTTAAAACCAAAAAGGACAGGGCGTGGGGAGAGCACTTTGCCTGGGAAAGGCCCGCGTTTGGACGACCTGGATCTGCATTCGAGTGCTAggctactacactactacattcTGAAATACGTTAGTTTTTTTATTGTTGACGACGAATGTTACTTGGAAATGTATGTTTTCATGCATGTCTTTGACTCTGTGGACAGTATTCTGTGGAGGTTAAAGGGCAGCATCGACGCATTTGTCTCAGTTTCCGTGTGAGACTTTCGATGTGGACTGACTGCGGTATTATAGGCTAATGGGTTGAAATAATGTGTCGCCAACCTGTGCAAAAATAATTGAGGTTATTCTTTTCagaatacatttatttatttattgatgaCACGTGTTACATGAGGAATAGATCCTATGTCTGAAATGCATTCCTATTTTTATTATTGTTGTGTAAATAATTGTATATTTTCCGCAATAAAGTAAATGATAAAACAAAACAA
>NM_001124677.1
ATGACCGGGGAAGAGTCGAGCTCCCCAGGCTCTCCACTAGACAGTCTCGGCAACAGTGAGGGGGAACTGGATAGGCAACCGAAGAGATGTGGGAGGAAAAGGACATCAAGCAGGAAAAACGGGGAGGATTCAGATAGCCCTACCCCTGGGAAAAGAGGGAAAAAGTCAAGCAGCAGCAGTCCACATTCTTTCGAAGACCTACAGACGCAACGAGTCATGGCGAACGTGCGCGAGCGGCAGAGGACGCAGTCACTCAACGAAGCTTTCTCGTCTTTGCGGAAAATCATCCCCACTTTGCCTTCAGACAAACTGAGCAAAATACAAACCTTAAAACTTGCTGCCAGGTACATCGATTTCCTGTACCAAGTTCTGCAGAGCGATGAATTGGACTCCAAAATGGCAAGTTGTAGTTATGTGGCTCATGAGAGATTAAGCTATGCGTTTTCTGTGTGGAGGATGGAGGGCGCTTGGTCCATGTCAGCATCTCACTAG

Function

NR:

description
Twist-related protein 2

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586317.2 False 1025 mRNA 0.44 2 8393785 8395267
XM_021586325.2 False 1357 mRNA 0.44 2 8393785 8395476
NM_001124677.1 True 492 mRNA 0.51 1 8394736 8395227

Neighbor

gene id symbol gene type direction distance location
LOC110516569 LOC106595628 coding downstream 269626 8088064 ~ 8124159 (-)
LOC118937629 LOC106595628 coding downstream 445268 7907425 ~ 8092825 (-)
LOC118937628 LOC106595845 coding downstream 455536 7933313 ~ 7938249 (-)
LOC118937627 NA coding downstream 481527 7909757 ~ 7912258 (-)
LOC110519743 LOC106595845 coding downstream 486532 7896171 ~ 8080181 (-)
LOC118937639 LOC106573719 coding upstream 28812 8423811 ~ 8429320 (-)
LOC118936301 LOC106595809 coding upstream 70631 8466107 ~ 8471522 (-)
LOC110506629 LOC106573674 coding upstream 112103 8507579 ~ 8513361 (-)
LOC110535184 LOC106605879 coding upstream 297660 8693136 ~ 8752164 (-)
LOC110519098 LOC106594466 coding upstream 374405 8769881 ~ 8782987 (-)
G110935 NA non-coding downstream 16750 8376644 ~ 8377035 (-)
G110928 NA non-coding downstream 32475 8360900 ~ 8361310 (-)
G110910 NA non-coding downstream 45740 8347539 ~ 8348045 (-)
G110873 LOC106595161 non-coding downstream 64938 8326499 ~ 8328847 (-)
G110884 NA non-coding downstream 96121 8292843 ~ 8297664 (-)
G110962 NA non-coding upstream 1286 8396762 ~ 8397110 (-)
G111017 NA non-coding upstream 25454 8420930 ~ 8421684 (-)
G111047 LOC106574003 non-coding upstream 104628 8500104 ~ 8505604 (-)
G111055 NA non-coding upstream 127847 8523323 ~ 8523546 (-)
G111111 NA non-coding upstream 206445 8601921 ~ 8602255 (-)
G110896 NA other downstream 68105 8324960 ~ 8325680 (-)
G110467 NA other downstream 894648 7498670 ~ 7499137 (-)
hoxa13b hoxa13b other downstream 919099 7472033 ~ 7474734 (-)
G111044 NA other upstream 126526 8522002 ~ 8522761 (-)

Expression


Co-expression Network