LOC118937639 (LOC106573719)


Basic Information

Item Value
gene id LOC118937639
gene name LOC106573719
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8423811 ~ 8429320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937149.1
GTGAGTCGCGAGCACTGCAGCTGTGGGCAAGAAAAGTTTTGAGAGGGTGGCAACTGGCGAGAATGACGCGTGTCTGTCTTACAGTAGATCAAACACGCATACTAGAAGTCCACAGAGCTGTCCAGAGCAAATCCTGATAAATCCATGTAGTCTATGACAAGATATGATTTAGAATACCTTATAAAGTCTAACAGTGGAGTATTTTTCAGAGGGAACGTGTAAGTAGCCCTTACATGGTGGATCACTTGGTGGTTACTGGATAGAAAACGTTCCCTCGCGCAAAAGTCCACCTGCGTAATTTTGATTAATGGATTAATGCTTTTAGCGCAAAAGTCAATACTCGCTGCTTTTTGGGTGGTTCGAGGGGGTGACCACCACCACCTCTTGAATGACCCGCTGTGAAGGAATGAGTGATGCCGGACAGATGTAACATCTGGAGTCTGGTGGTACTGTCGGTGTTGGAGATGGGGCTCGGTGCGTCCAGCATCGCCCTCGGGGTGTTCGGCATCATCCGAGTCCGGTCGGTTCACAAGCTGCAGCTGGGGGATGCCTCTCCTATATGGAGCGGAATTTGTTTTCTCATATGTGGACTATGTGGGATGGTGTGTGCAAAGAAGAGGTCAGGATTGATTATGATCCTATTTTCAGCCTGCTGTATCTGTGGGTTGATCAGTGGGATCCTAAACTTCCAGTTTGTGCGTGTGGTGGCAAAGCGTCCCGATGCCCTGCCGTCCCTCTACCTGGCCATCATGGTGCTGGCCTGCCTGGGCATCGGAGTGTCCATCCTGTTTACCTGGCTCACTTGTCGTCTGGCCAGCAGTGAACAGCAGAGGATGTACCTGGAGAGAGAGCTGTCCCTGCACCATTCCCATGAGATGAGTGAAAAGGAGTTGGCTGAGAGATCTGAGAGAGCAGCCAGCATTCCCCAGATCTCCTTCAATGGAAAGTCCTCACCTCCATTGTCATTAGGCTGAAGCCCAGCTGTGTTACTGTATTCAAAGCATCATGGAGACAATGTTGGTTCCATTCAACACCAACGATTACAGGGGACGTGATCTCTTGCAATGAACTAATACACAAAGGAATCAACATATGGCAACACTATGAGAAGGCGCTGTGAGATTTGACAATCGGCTTACTAGTGACGATGTAGGCTGAATGATGCACCTGGATAGTCCCCAGACATGGATTTGGGGGACATGGAAACAGCAGGTAGAGGGGACAAAGCTATGGCACATCCAAAGGCTCAAAAAGAACAACTAAACCACTTGAGATTGTCAGTGTTGAGATGGTGAAAGACATAACTGCTTCAGGGTTTGACTGGTCATAGAGATCATGTCATACAGTGGAAGTTGCTTCCAGTACtattatttatttgaatgattatttatgtatttattatttaaatatatgtttgtttattcatAAGCATGAAAATATAATAACATCCCATCTGTGATAGGTTTTTACAATTTAGAGCATTATAATGAATTAAAggtttaatgatggtgttggatgaCGAGTACGACGGATGATGATGAATGATGATGACTACAATGAATGATGATGACTACAatggatgatgatggtgatgacgaCTACGatggatgatgatggtgat
>TU126590
gttttgttagtcactctcactcagatatcattaacatggcacaagtcatggcaaaatgtatgaaattaacttttaaactgcaaaactgtctctccaccccatggcaaaatgtgtagaattgcaaaaaaatgtgctttaaatCTCTCTTCAGATGATCCTATTTTCAGCCTGCTGTATCTGTGGGTTGATCAGTGGGATCCTAAACTTCCAGTTTGTGCGTGTGGTGGCAAAGCGTCCCGATGCCCTGCCGTCCCTCTACCTGGCCATCATGGTGCTGGCCTGCCTGGGCATCGGAGTGTCCATCCTGTTTACCTGGCTCACTTGTCGTCTGGCCAGCAGTGAACAGCAGAGGATGTACCTGGAGAGAGAGCTGTCCCTGCACCATTCCCATGAGATGAGTGAAAAGGAGTTGGCTGAGAGATCTGAGAGAGCAGCCAGCATTCCCCAGATCTCCTTCAATGGAAAGTCCTCACCTCCATTGTCATTAGGCTGAAGCCCAGCTGTGTTACTGTATTCAAAGCATCATGGAGACAATGTTGGTTCCATTCAACACCAACGATTACAGGGGACGTGATCTCTTGCAATGAACTAATACACAAAGGAATCAACATATGGCAACACTATGAGAAGGCGCTGTGAGATTTGACAATCGGCTTACTAGTGACGATGTAGGCTGAATGATGCACCTGGATAGTCCCCAGACATGGATTTGGGGGACATGGAAACAGCAGGTAGAGGGGACAAAGCTATGGCACATCCAAAGGCTCAAAAAGAACAACTAAACCACTTGAGATTGTCAGTGTTGAGATGGTGAAAGACATAACTGCTTCAGGGTTTGACTGGTCATAGAGATCATGTCATACAGTGGAAGTTGCTTCCAGTACtattatttatttgaatgattatttatgtatttattatttaaatatatgtttgtttattcatAAGCATGAAAATATAATAACATCCCATCTGTGATAGGTTTTTACAATTTAGAGCATTATAATGAATTAAAggtttaatgatggtgttggatgaCGAGTACGACGGATGATGATGAATGATGATGACTACAATGAATGATGATGACTACAatggatgatgatggtgatgacgaCTACGatggatgatgatggtgatgacgaCTGCGatggatgatgatggtgatgacgaCTACGATGGATGATGAtgaatgatgacgatgatgactaTGGTGGATGATGTtgaatgatgacgatgatgactaTGGTGGATGATGTTGAATGATGACTATGGTGGATGATGTtgaTGTTGATGACTTTATTGTATCCATTAGGAAATTCATTCTATATGCATTAGTATATTTTGCAGCAGACCACAACCAGTAGGAGGCAGTAGTGATAGTTATATTCCCCCACTAGAGGGAGCACTCCATCTCCTTTTAACTAATTTTCTGtaccaaacggcaccctattccctatatagtgcactacttttgaccagagccctatggtcaatagtggtgcactatataaagAATTGGGACTCAGAGTTGAATCTTTTAGTCGAAAGTTTGAACAGAATAATAAATATGGAAAGTTATGGATAC

Function

NR:

description
PREDICTED: transmembrane protein 196-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937149.1 False 1621 mRNA 0.46 4 8424288 8429320
TU126590 True 1588 TUCP 0.42 3 8423811 8426012

Neighbor

gene id symbol gene type direction distance location
LOC100136714 twst2 coding downstream 28812 8393785 ~ 8395476 (-)
LOC110516569 LOC106595628 coding downstream 300129 8088064 ~ 8124159 (-)
LOC118937629 LOC106595628 coding downstream 475771 7907425 ~ 8092825 (-)
LOC118937628 LOC106595845 coding downstream 486039 7933313 ~ 7938249 (-)
LOC118937627 NA coding downstream 512030 7909757 ~ 7912258 (-)
LOC118936301 LOC106595809 coding upstream 36787 8466107 ~ 8471522 (-)
LOC110506629 LOC106573674 coding upstream 78259 8507579 ~ 8513361 (-)
LOC110535184 LOC106605879 coding upstream 263816 8693136 ~ 8752164 (-)
LOC110519098 LOC106594466 coding upstream 340561 8769881 ~ 8782987 (-)
LOC110516599 LOC106606020 coding upstream 362316 8791636 ~ 8802003 (-)
G111017 NA non-coding downstream 2604 8420930 ~ 8421684 (-)
G110962 NA non-coding downstream 27178 8396762 ~ 8397110 (-)
G110935 NA non-coding downstream 47253 8376644 ~ 8377035 (-)
G110928 NA non-coding downstream 62978 8360900 ~ 8361310 (-)
G110910 NA non-coding downstream 76243 8347539 ~ 8348045 (-)
G111047 LOC106574003 non-coding upstream 70784 8500104 ~ 8505604 (-)
G111055 NA non-coding upstream 94003 8523323 ~ 8523546 (-)
G111111 NA non-coding upstream 172601 8601921 ~ 8602255 (-)
G111135 NA non-coding upstream 173005 8602325 ~ 8639765 (-)
G111143 NA non-coding upstream 183643 8612963 ~ 8624946 (-)
G110896 NA other downstream 98608 8324960 ~ 8325680 (-)
G110467 NA other downstream 925151 7498670 ~ 7499137 (-)
hoxa13b hoxa13b other downstream 949602 7472033 ~ 7474734 (-)
G111044 NA other upstream 92682 8522002 ~ 8522761 (-)
G111650 NA other upstream 620969 9050289 ~ 9050798 (-)

Expression


Co-expression Network