LOC110506629 (LOC106573674)


Basic Information

Item Value
gene id LOC110506629
gene name LOC106573674
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8507579 ~ 8513361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937129.1
CTTCCGTTCTTTTATTATGAAGAGGGTGGTGAAGGGGTGGAGAGCTGTCTGAAGTAGTCTACTGATGACCTCACGTTAGAATGTGGCAGTGTGGTGGAACAGAGGCGCTGATTGGTCGCCCGTGTCACAGCGGTACTTCAAAGCCGGAGAGGACCTACAATTGTGGTGGAATGGGCGGAACACATCATTGTATTGCACACCTCTAAAAAAACACTGCTGTGATTCATAAATATAAAAAGATCCTCTGAGGAGGGCACTTTTTGTGATGGCAACTTCACTTCTAGGGGTGAGTCTAAGGGGTTTCTTGCTGGTTTAATTAGTTATTTTATTGTCCAGCGGAGGGGATTAACATTGCTTCCGTCACACTAGGAAAGACAGTTCGTTGATTATGTTTTAAGCAAGTGGGTCACGAGTAAAACGCTGAGATTCATTTCGCAACGACAGAGAGACGCGCGCGGGATATAACTTTCTACTGATGTGCACAAGACGCGCATGTTGTTGTACATGTCATATGTAACGTCATTTAATAGTTTTGTTATAGCTACATTTTGGTGCGTTCTATTTCATCTCAGTCTACAGGAGGAGCCGAGGCTAGGATCGACTCCTTTAGCCATGTTGGCTGCGACATGCAACAAGATAGGGAGTCCGAGCCCATCACCATCCTCCATTTCGGATAATTCTTCATCTTTTGGGAAAGGCTTCCACCCGTGGAAGCGAGCCACCGCCAGCAGCTGCAGCCTTGGGTCCGGCCTGTCCGGTTTTGGAGTGTCCCGTAACGGAGCTGGTCTATCGGATTCGTTTGGCACCAACAGCTCTCCCGGATCCAGTGCCTTCTCCCTAACGTCCGGCAACTCATCCACGCCCCACTTTGGAAACGACTATTCTGTATTTCAGGCCTCCGTTACAAACAGTTCTCAAGAACCCAGCCATCAGCCCGTCTTCATTTCCAAGGTGCACTCCTCAGTGGACAGTCTGCAAGGCATCTACCCGAGAATGAGCGTTGCACATCCGTACGAGTCCTGGTTCAAGTCGTCCCATCATGGTATCCCCACAGGAGAGGTTGGCACCACCGGCGCGTCTGCATGGTGGGATGTGGGAGCGGGTTGGATTGATGTTCAGAACCCGAGTGGAGCAGCTCTACAGTCCTCGTTGCACTCCGGTGGACTCCAGACATCGTTACACTCTCCTTTAGGGGGCTACAATTCCGATTACTCCAGCCTAAGTCACTCAGCCTTCAGTACAAGTCCCTCTCCACACCTTTTGACAACCGGACAACACCTGATGGACGGTTACAAGCCGGTGTTATCCTCTTATCCGGACTCCAGTCCGTCTCCATTAGGCGGAGCAGGGGGGAATATGTTATCTGGGGGGCCAACGGCCTCTCTAGCGGGGTCTCCCCGGTCCTCCGCACGGCGCTACTCTGGCAGAGCCACCTGCGACTGTCCCAACTGTCAGGAGTCGGAAAGGCTGGGGCCGGCAGGAGCAAGTCTGCGGAGGAAAGGGCTCCATAGCTGTCACATTCCAGGCTGTGGAAAGGTTTACGGCAAAACGTCGCACCTCAAGGCGCACTTGAGGTGGCACACCGGAGAGAGACCGTTTGTGTGTAACTGGCTGTTTTGCGGGAAGAGGTTTACGCGCTCTGATGAGCTCCAGCGACACTTGCGCACGCACACCGGGGAGAAAAGATTCGCCTGTCCGGTCTGCAACAAGAGGTTTATGCGGAGCGACCATCTGAGTAAACACGTAAAGACTCACAGCGCCGGGGGCTCCGCCGGGTCTGGCTCTGGCAgcgggggaaagaggggaagcgATACCGACAGTGAGCACAGTGCACCGGGGAGCCCTCGATGCCATTCCCCCGACCTGTTGCAAGCTCCCGAATCTACCCCGGGTACGGGAAACGAACGGCCTTTCTAAACTCTCTCGACTAAGTATAATATCTGAGAAAACATATGATCTGAGGGAAATGGCTAAACTACAGTGGACATACGTCGAGTATGCGTAATTATGCTAATGTGTGCAAGTTGAGTTAATCAAGTGATTTAGACTACTGATCAAATGATATCTCCTAGTATCCTATTGATGACGTGGGGTGTACAGGTCAAATACAGTACTGGTAAAGTAATCCTGAAGGCACACTGGAACACTGGGGCACAATGTAAACACATCAGTGTTCTTCTAACGCACAGACTGATCCAACCGGGGACGCCTATACTTTGGTGTATGTACCCTTTTGAGTGTTTTTACGCAACCTGGTTATTACATGGGTATTACAATAAGCAAGAAATAGACAACGTTGTTCTATCACTTGGTGATAATATGTGTCCTGCAATATCGTGTTACTGCTGTGCTGACGTACTTTTATTCAAAACCAAACTGTGGCACTTTATTAGCCTGTTGAACACTGAAATGATCAGTACTCGTCCTTTTCGACGGCTCCTTTGTAAGAACAAATCACTGTAGCTGTTTATGTGCGGTGATCCACGTTTTGTTTATGTCCTGATCTACCCTATCGAACACTTCGCCTGTTTATTATTAATAATGGAGGAAAAGTTATGTCACCCGTTGGTAAAACGCTCCACGGATACTATCAGAAAGAGCCTGTCCAAGTTTGTAATGAATACTTACATTTCACGTCACTGCAAGGCTGTATATAATGAGAAATGTAATAGCCTAGAAAATTATTCCGCACCAATGTAAAGGTGAGTTATGTATTTGTCCATGAGACGATTTTGTATAGTCATTTCTAGTTGTACATTTGGCTCTAGTAAATATCTGAACATGTACGGAAGTGTATTTTGacattattgttttattttgttttgtttgtttgtcaggaTATAAAAAATGTTATTGTGGGGAGTTGTATTTAACCACGAGTTTTACTTGTATTTCTGAGTCTTTTAATAGACGCACTTTGAATTTATTTGTAAGAAGATTTCGAAATCATTCACTGTTTATTATTCTCATCTTTTAATTTAAGTAAGCATGTTGTAAAGTGACGTTAAATTCACAAGCATCATTTCTCAGAGACTGGCTTTCTAATTTAAGCCACTCAATAAAGTCGGTATGGA
>XM_036937138.1
ATTTTCACTCTCATTTAACTTTACCTTCTTCCGTTCTTTTATTATGAAGAGGGTGGTGAAGGGGTGGAGAGCTGTCTGAAGTAGTCTACTGATGACCTCACGTTAGAATGTGGCAGTGTGGTGGAACAGAGGCGCTGATTGGTCGCCCGTGTCACAGCGGTACTTCAAAGCCGGAGAGGACCTACAATTGTGGTGGAATGGGCGGAACACATCATTGTATTGCACACCTCTAAAAAAACACTGCTGTGATTCATAAATATAAAAAGATCCTCTGAGGAGGGCACTTTTTGTGATGGCAACTTCACTTCTAGGGGAGGAGCCGAGGCTAGGATCGACTCCTTTAGCCATGTTGGCTGCGACATGCAACAAGATAGGGAGTCCGAGCCCATCACCATCCTCCATTTCGGATAATTCTTCATCTTTTGGGAAAGGCTTCCACCCGTGGAAGCGAGCCACCGCCAGCAGCTGCAGCCTTGGGTCCGGCCTGTCCGGTTTTGGAGTGTCCCGTAACGGAGCTGGTCTATCGGATTCGTTTGGCACCAACAGCTCTCCCGGATCCAGTGCCTTCTCCCTAACGTCCGGCAACTCATCCACGCCCCACTTTGGAAACGACTATTCTGTATTTCAGGCCTCCGTTACAAACAGTTCTCAAGAACCCAGCCATCAGCCCGTCTTCATTTCCAAGGTGCACTCCTCAGTGGACAGTCTGCAAGGCATCTACCCGAGAATGAGCGTTGCACATCCGTACGAGTCCTGGTTCAAGTCGTCCCATCATGGTATCCCCACAGGAGAGGTTGGCACCACCGGCGCGTCTGCATGGTGGGATGTGGGAGCGGGTTGGATTGATGTTCAGAACCCGAGTGGAGCAGCTCTACAGTCCTCGTTGCACTCCGGTGGACTCCAGACATCGTTACACTCTCCTTTAGGGGGCTACAATTCCGATTACTCCAGCCTAAGTCACTCAGCCTTCAGTACAAGTCCCTCTCCACACCTTTTGACAACCGGACAACACCTGATGGACGGTTACAAGCCGGTGTTATCCTCTTATCCGGACTCCAGTCCGTCTCCATTAGGCGGAGCAGGGGGGAATATGTTATCTGGGGGGCCAACGGCCTCTCTAGCGGGGTCTCCCCGGTCCTCCGCACGGCGCTACTCTGGCAGAGCCACCTGCGACTGTCCCAACTGTCAGGAGTCGGAAAGGCTGGGGCCGGCAGGAGCAAGTCTGCGGAGGAAAGGGCTCCATAGCTGTCACATTCCAGGCTGTGGAAAGGTTTACGGCAAAACGTCGCACCTCAAGGCGCACTTGAGGTGGCACACCGGAGAGAGACCGTTTGTGTGTAACTGGCTGTTTTGCGGGAAGAGGTTTACGCGCTCTGATGAGCTCCAGCGACACTTGCGCACGCACACCGGGGAGAAAAGATTCGCCTGTCCGGTCTGCAACAAGAGGTTTATGCGGAGCGACCATCTGAGTAAACACGTAAAGACTCACAGCGCCGGGGGCTCCGCCGGGTCTGGCTCTGGCAgcgggggaaagaggggaagcgATACCGACAGTGAGCACAGTGCACCGGGGAGCCCTCGATGCCATTCCCCCGACCTGTTGCAAGCTCCCGAATCTACCCCGGGTACGGGAAACGAACGGCCTTTCTAAACTCTCTCGACTAAGTATAATATCTGAGAAAACATATGATCTGAGGGAAATGGCTAAACTACAGTGGACATACGTCGAGTATGCGTAATTATGCTAATGTGTGCAAGTTGAGTTAATCAAGTGATTTAGACTACTGATCAAATGATATCTCCTAGTATCCTATTGATGACGTGGGGTGTACAGGTCAAATACAGTACTGGTAAAGTAATCCTGAAGGCACACTGGAACACTGGGGCACAATGTAAACACATCAGTGTTCTTCTAACGCACAGACTGATCCAACCGGGGACGCCTATACTTTGGTGTATGTACCCTTTTGAGTGTTTTTACGCAACCTGGTTATTACATGGGTATTACAATAAGCAAGAAATAGACAACGTTGTTCTATCACTTGGTGATAATATGTGTCCTGCAATATCGTGTTACTGCTGTGCTGACGTACTTTTATTCAAAACCAAACTGTGGCACTTTATTAGCCTGTTGAACACTGAAATGATCAGTACTCGTCCTTTTCGACGGCTCCTTTGTAAGAACAAATCACTGTAGCTGTTTATGTGCGGTGATCCACGTTTTGTTTATGTCCTGATCTACCCTATCGAACACTTCGCCTGTTTATTATTAATAATGGAGGAAAAGTTATGTCACCCGTTGGTAAAACGCTCCACGGATACTATCAGAAAGAGCCTGTCCAAGTTTGTAATGAATACTTACATTTCACGTCACTGCAAGGCTGTATATAATGAGAAATGTAATAGCCTAGAAAATTATTCCGCACCAATGTAAAGGTGAGTTATGTATTTGTCCATGAGACGATTTTGTATAGTCATTTCTAGTTGTACATTTGGCTCTAGTAAATATCTGAACATGTACGGAAGTGTATTTTGacattattgttttattttgttttgtttgtttgtcaggaTATAAAAAATGTTATTGTGGGGAGTTGTATTTAACCACGAGTTTTACTTGTATTTCTGAGTCTTTTAATAGACGCACTTTGAATTTATTTGTAAGAAGATTTCGAAATCATTCACTGTTTATTATTCTCATCTTTTAATTTAAGTAAGCATGTTGTAAAGTGACGTTAAATTCACAAGCATCATTTCTCAGAGACTGGCTTTCTAATTTAAGCCACTCAATAAAGTCGGTATGGA
>XM_036937134.1
TGCATCCCTTATGTTAGCTCTCATACCTACCTGGGATATTTAGGTAAGCACGTGACTGCGCAACCTTGTCAGTTGGCTAGAACACATGTTGTGATTAGACCACCGGTGGACGAGcaagcctctctctcctcagttaTTCCTAATTAAACGCAATTCCCAAAGTACCATTTATCTTGCAGGAGACAGGGTCTACTGTTGTACCGCCTGCGGGTGGAGGGGATGCAGCGCTGCGCTCAGCCTCGTGCACTACAGACAGAAACATCGAGGGTCAATCGATATCAATATGGCGCCGAGTGGAGCACGGAGGAGCCGAGGCTAGGATCGACTCCTTTAGCCATGTTGGCTGCGACATGCAACAAGATAGGGAGTCCGAGCCCATCACCATCCTCCATTTCGGATAATTCTTCATCTTTTGGGAAAGGCTTCCACCCGTGGAAGCGAGCCACCGCCAGCAGCTGCAGCCTTGGGTCCGGCCTGTCCGGTTTTGGAGTGTCCCGTAACGGAGCTGGTCTATCGGATTCGTTTGGCACCAACAGCTCTCCCGGATCCAGTGCCTTCTCCCTAACGTCCGGCAACTCATCCACGCCCCACTTTGGAAACGACTATTCTGTATTTCAGGCCTCCGTTACAAACAGTTCTCAAGAACCCAGCCATCAGCCCGTCTTCATTTCCAAGGTGCACTCCTCAGTGGACAGTCTGCAAGGCATCTACCCGAGAATGAGCGTTGCACATCCGTACGAGTCCTGGTTCAAGTCGTCCCATCATGGTATCCCCACAGGAGAGGTTGGCACCACCGGCGCGTCTGCATGGTGGGATGTGGGAGCGGGTTGGATTGATGTTCAGAACCCGAGTGGAGCAGCTCTACAGTCCTCGTTGCACTCCGGTGGACTCCAGACATCGTTACACTCTCCTTTAGGGGGCTACAATTCCGATTACTCCAGCCTAAGTCACTCAGCCTTCAGTACAAGTCCCTCTCCACACCTTTTGACAACCGGACAACACCTGATGGACGGTTACAAGCCGGTGTTATCCTCTTATCCGGACTCCAGTCCGTCTCCATTAGGCGGAGCAGGGGGGAATATGTTATCTGGGGGGCCAACGGCCTCTCTAGCGGGGTCTCCCCGGTCCTCCGCACGGCGCTACTCTGGCAGAGCCACCTGCGACTGTCCCAACTGTCAGGAGTCGGAAAGGCTGGGGCCGGCAGGAGCAAGTCTGCGGAGGAAAGGGCTCCATAGCTGTCACATTCCAGGCTGTGGAAAGGTTTACGGCAAAACGTCGCACCTCAAGGCGCACTTGAGGTGGCACACCGGAGAGAGACCGTTTGTGTGTAACTGGCTGTTTTGCGGGAAGAGGTTTACGCGCTCTGATGAGCTCCAGCGACACTTGCGCACGCACACCGGGGAGAAAAGATTCGCCTGTCCGGTCTGCAACAAGAGGTTTATGCGGAGCGACCATCTGAGTAAACACGTAAAGACTCACAGCGCCGGGGGCTCCGCCGGGTCTGGCTCTGGCAgcgggggaaagaggggaagcgATACCGACAGTGAGCACAGTGCACCGGGGAGCCCTCGATGCCATTCCCCCGACCTGTTGCAAGCTCCCGAATCTACCCCGGGTACGGGAAACGAACGGCCTTTCTAAACTCTCTCGACTAAGTATAATATCTGAGAAAACATATGATCTGAGGGAAATGGCTAAACTACAGTGGACATACGTCGAGTATGCGTAATTATGCTAATGTGTGCAAGTTGAGTTAATCAAGTGATTTAGACTACTGATCAAATGATATCTCCTAGTATCCTATTGATGACGTGGGGTGTACAGGTCAAATACAGTACTGGTAAAGTAATCCTGAAGGCACACTGGAACACTGGGGCACAATGTAAACACATCAGTGTTCTTCTAACGCACAGACTGATCCAACCGGGGACGCCTATACTTTGGTGTATGTACCCTTTTGAGTGTTTTTACGCAACCTGGTTATTACATGGGTATTACAATAAGCAAGAAATAGACAACGTTGTTCTATCACTTGGTGATAATATGTGTCCTGCAATATCGTGTTACTGCTGTGCTGACGTACTTTTATTCAAAACCAAACTGTGGCACTTTATTAGCCTGTTGAACACTGAAATGATCAGTACTCGTCCTTTTCGACGGCTCCTTTGTAAGAACAAATCACTGTAGCTGTTTATGTGCGGTGATCCACGTTTTGTTTATGTCCTGATCTACCCTATCGAACACTTCGCCTGTTTATTATTAATAATGGAGGAAAAGTTATGTCACCCGTTGGTAAAACGCTCCACGGATACTATCAGAAAGAGCCTGTCCAAGTTTGTAATGAATACTTACATTTCACGTCACTGCAAGGCTGTATATAATGAGAAATGTAATAGCCTAGAAAATTATTCCGCACCAATGTAAAGGTGAGTTATGTATTTGTCCATGAGACGATTTTGTATAGTCATTTCTAGTTGTACATTTGGCTCTAGTAAATATCTGAACATGTACGGAAGTGTATTTTGacattattgttttattttgttttgtttgtttgtcaggaTATAAAAAATGTTATTGTGGGGAGTTGTATTTAACCACGAGTTTTACTTGTATTTCTGAGTCTTTTAATAGACGCACTTTGAATTTATTTGTAAGAAGATTTCGAAATCATTCACTGTTTATTATTCTCATCTTTTAATTTAAGTAAGCATGTTGTAAAGTGACGTTAAATTCACAAGCATCATTTCTCAGAGACTGGCTTTCTAATTTAAGCCACTCAATAAAGTCGGTATGGA

Function

NR:

description
transcription factor Sp8 isoform X2

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function

KEGG:

id description
K09198 SP8; transcription factor Sp8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937129.1 False 3074 mRNA 0.47 2 8507579 8510893
XM_036937138.1 False 2808 mRNA 0.48 2 8507579 8510920
XM_036937134.1 True 2798 mRNA 0.48 2 8507579 8513361
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118936301 LOC106595809 coding downstream 36057 8466107 ~ 8471522 (-)
LOC118937639 LOC106573719 coding downstream 78259 8423811 ~ 8429320 (-)
LOC100136714 twst2 coding downstream 112103 8393785 ~ 8395476 (-)
LOC110516569 LOC106595628 coding downstream 383420 8088064 ~ 8124159 (-)
LOC118937629 LOC106595628 coding downstream 559062 7907425 ~ 8092825 (-)
LOC110535184 LOC106605879 coding upstream 179775 8693136 ~ 8752164 (-)
LOC110519098 LOC106594466 coding upstream 256520 8769881 ~ 8782987 (-)
LOC110516599 LOC106606020 coding upstream 278275 8791636 ~ 8802003 (-)
LOC110514444 LOC108270036 coding upstream 290841 8804202 ~ 8819077 (-)
LOC110506642 LOC106606082 coding upstream 561412 9074773 ~ 9087920 (-)
G111047 LOC106574003 non-coding downstream 1975 8500104 ~ 8505604 (-)
G111017 NA non-coding downstream 85895 8420930 ~ 8421684 (-)
G110962 NA non-coding downstream 110469 8396762 ~ 8397110 (-)
G110935 NA non-coding downstream 130544 8376644 ~ 8377035 (-)
G110928 NA non-coding downstream 146269 8360900 ~ 8361310 (-)
G111055 NA non-coding upstream 9962 8523323 ~ 8523546 (-)
G111111 NA non-coding upstream 88560 8601921 ~ 8602255 (-)
G111135 NA non-coding upstream 88964 8602325 ~ 8639765 (-)
G111143 NA non-coding upstream 99602 8612963 ~ 8624946 (-)
G111144 NA non-coding upstream 100819 8614180 ~ 8615636 (-)
G110896 NA other downstream 181899 8324960 ~ 8325680 (-)
G111044 NA other upstream 8641 8522002 ~ 8522761 (-)
G111650 NA other upstream 536928 9050289 ~ 9050798 (-)
G111659 NA other upstream 554251 9067612 ~ 9068062 (-)

Expression

LOC110506629(LOC106573674) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110506629(LOC106573674) Expression in each Bioproject

Bar chart with 13 bars.
LOC110506629(LOC106573674) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network