LOC110519098 (LOC106594466)


Basic Information

Item Value
gene id LOC110519098
gene name LOC106594466
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8769881 ~ 8782987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937178.1
TCAAGCCTTTCATACTACTATAGCTTGAATTCCAGCTCTCCGGAAAGAGGAGCATCTCCATGTAGGATACATGGCAAAAGACACCTCATCAAGGAGCACCAGCAAGGATTCACCCTAACATCAGAGCCAAGGCAATGTCCCTGCGAGCAGACGCAGCCCagtgtggaggggtggtggtggagctTGAGTCTGATGACATCAGGGAGGCTCGAGCCAGGAAGGCCAGGAGTACATCAGGGTCAGCCCTCATCTACCTCAGGGGCCCTAAATTCCTGATCTACGTCAGTGGGGCACTGTCCATGTGGGGTGACCGTATGTGGCACTTTGCCATTTCGGTGTTCCTGATCGAGCTGTATGGACGGAACCTGCTGCTGACCGCAATATTCGGCTTGGTGGTGGCGGGGTCAGTGCTGCTGTTAGGGGCGTTGATTGGAGACTGGGTTGACCGCAACCCCAGGAACAAAGTGGCGCACGCATCCTTGTTGGTTCAGAACATTTCAGTGACGGTGTGTAGCATTGTGCTGATGTTGGTCTTCTTATATAAACAGTGGATTGAGAGCATTTGGGATGGCTGGTTAACTGTGGTTTGTTATACGGTGGTGATCGTCCTGGCAGATGTGGCTAACCTAGCAAGCACAGCGCTGACCATCGCCATCCAGAGGGACTGGATTGTGGTTATCACTGGATACAACCGGGGGCACCTCGCCGGGATGAATGCTACCATGCGGCGCATCGATCAGGTGACCAACATCCTGGCACCGCTGGCGGTGGGACAGGTCATGACCCTGGCCTCCAACGTGATAGGCTGCGGTTTCATCCTGGGCTGGAACCTGGTCTCCCTCATCGTGGAGTTTATCTTCCTGTCCCGGGTCTACCGCATTGTCCCGGCGCTGTCCGTCAAACCACCTGCGCCCGAGGACGGCCAGGCCTCCCTAGAGAGACCAGCAGAGAGGACGGAGGGactggtggagaggagggggtcaCAAGtagAGCATAGTGAGGTGGTGACATCAGCCCCGGGCCTCAGTGATGACGACATGAGCCTGAACCTCAAGGAGGTCACCAACCTGCCTCTGTGTTTTGGACGCTTCCGCTGGCTGCTGAGCACCTGTAAGGACGGCTGGAGGGCCTACTACCGCCAGGATGTCTTCCTGGCTGGGATGGGCCTGGCCTTCCTCTACACAACTGTCCTGGGCTTCGACTGCATCACCACGGGCTACGCCTACACCCAGGGCATCAGTGGCTCCCTGCTCAGTCTGCTGATGGGGGTCTCGGCTATAACAGGCCTCATGGGCACCATCATGTTCACCAAGCTGAGGAAGGCCTACGGTTTAGTCAACACAGGCATCATCTCCAGCTGTCTCCATCTTTGCTgtctgctgctgtgtgtgtgttctgtgttcgcCCCCGGCAGCCCCATGGACCTCCGCCTGCTCAGGCCCTTCCTGGACGCCAACTCAACGTTGTCGGCGGCCGGGGGGATGGTGGAGGGCCAGAGGCAGAAACACACCTACCCGATGCGGGGTGGCATTAATCAGCCGCTGCTGCCCGACCGCTCGTCCATCCACTGGACCAACAACACGGTGCTGTTTGAGAATATGCCATCAGGCATGGAGCCAGACTCCTACATCTCTATAATCCTGCTGTTCTTGGGGGTCATCACAGCACGCATCGGTCTGTGGTCCTTTGACCTGACCGTGACCCAGCTGCTTCAGGAGAACATCTGTGAGTCAGAACGTGGTGTGGTCAACGGGGTCCAGAGCTCCATGAACTACTTGATGGACCTTCTCCACTTCATCATGGTCATCTCTGCTCCGCAGCCCCAGCACTTTGGCATCCTGGTCATCATCTCTGTACTGTTCATCACCACAGGACACACAATGTACTTCCTATACGCACGCAAAGCCAAGAGGAAACCTGCTGGATGCCTGGACACGTAGGGAGGCGGTGCGGCTTTCCGCGACAAAGCATGTGCCCAAAGACTCCACTCTGCCTGCGCCTGCCTGTGAAAtgaatgtctcttctctcttgttccctctgCGCTCTCATTGCTAGGCAACAATACAATACTGTAACACTCCTTCCCCACCATCCAGCCATTCATTCATTACAGCACAACACAGCAACTGTCTGTCGTGTCCTCCCCAACCTGGTTGCTATCTCCCTGCATGGTCAGGTGTAGTACGGCCAAGTGCTAAGGTACAGTAACAAACTAGAACTCAGGTAAACTAAAGTAAGATCCACCTTTTCCCTTCTGTACATAGGTTGAGGTGGTCGCAACAGATGCGGTGTTGGTCCCCTACCGTGGTAGGTTCTCCCACCTTAGTGTTGGTCCCATACCGTGGTAGGTTCTCCCACCTTAGTGTTGCTCCCATACCGTGGTAGGTTCTCCCACCTTAGTGTTGGTCCCCTACCGTGGTAGGTTCTCCCACCTCAGGAAAAGGGCACAGAGGGCAGgctgaggcagcagcagcagaacaCGCCTTTCCAGACATTTTGGATTACTGCAAGACCTTCATTATGGCAGTCTGTTGACCGTCTCAGAGTTGGGATGGgaattggatggatggatggatgtatttTTCTAACCCTCACACAGTAAAGAACTGGGCCTGGTGAAGCAGGTGACAgtaacaaaaagaagaagaaacgaGACTTAACAACTTTAACAAGTGGCAAACATGTTACTGCTCCGTCCACTTGGAAATCCAGGAAGTCCAAAAGGAAAACTAAAGGGAAGTTGGTGTCAGGTTGTGAGATACTGAACATTATAAAGGAGACCCCCTTGATGGACAGAAGAGAGAGGCTGTAGTGTCTTCTTCTCCTGGTCTGTTTCTCTGTGGATGAATCAGGCAGACATGTGCCTATTGATTAACACATGACATCATTAAAAAAAGATAGAATTTAAACCGGATCGCAGGAACATATCATAAGAACATAAAGATAGTAAGAAAAAAACAACATGCATTGAAATCAGAGGAAACCAAACGGACCATAATTGCTTGTGTACTTAGATAACTGAAAATAGCTTCCAAATTGTAAATGCTTTCCCTTCACATAGAAACAGAGTGATTTAATGCAGTTTGACAAATTCATAGCAAACAGATTTAGACTTCCTCTTTTATTTTGTGACCTGTTTTGAGATCAGTGTTTAGTAGATTGATAGGTCTATATGATTCTGGAATAAGGCAGTGTTGTATTACACTAGAACACCTACGCATCCTGTTTCCTTGTTGTTCTCATGAACTAAAACCTTACCTCAGTACAGTACAAGAAAACCGTGTTTGAAAAACTGACTTGGACATGTCTCTCAGCTATGTACAGCCATCTCCTTTCTGTACAGTGGTAATCCCATCAAAGTTGATCTCGTTGCCATGCAAACAGCACCACATCACAATTTATTTGTTTTTCTATCATATTTTCCTGTGGCGTATTGTTCACTTACATCTATAATTTGTTGTCCCTTTCTGTTTCAGACTGTTATTTATGATGACAATAAACACGGATTAAGA
>TU127230
TGCTGTTTGAGAATATGCCATCAGGCATGGAGCCAGACTCCTACATCTCTATAATCCTGCTGTTCTTGGGGGTCATCACAGCACGCATCGGTCTGTGGTCCTTTGACCTGACCGTGACCCAGCTGCTTCAGGAGAACATCTGTGAGTCAGAACGTGGTGTGGTCAACGGGGTCCAGAGCTCCATGAACTACTTGATGGACCTTCTCCACTTCATCATGGTCATCTCTGCTCCGCAGCCCCAGCACTTTGGCATCCTGGTCATCATCTCTGTAC

Function

NR:

description
PREDICTED: solute carrier family 40 member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937178.1 False 3512 mRNA 0.51 9 8769881 8782987
TU127230 True 273 TUCP 0.53 2 8771536 8772820

Neighbor

gene id symbol gene type direction distance location
LOC110535184 LOC106605879 coding downstream 17717 8693136 ~ 8752164 (-)
LOC110506629 LOC106573674 coding downstream 256520 8507579 ~ 8513361 (-)
LOC118936301 LOC106595809 coding downstream 298359 8466107 ~ 8471522 (-)
LOC118937639 LOC106573719 coding downstream 340561 8423811 ~ 8429320 (-)
LOC100136714 twst2 coding downstream 374405 8393785 ~ 8395476 (-)
LOC110516599 LOC106606020 coding upstream 8649 8791636 ~ 8802003 (-)
LOC110514444 LOC108270036 coding upstream 21215 8804202 ~ 8819077 (-)
LOC110506642 LOC106606082 coding upstream 291786 9074773 ~ 9087920 (-)
LOC110506677 c4 coding upstream 333579 9116566 ~ 9141714 (-)
LOC110534035 LOC106573444 coding upstream 405941 9188928 ~ 9211433 (-)
G111516 NA non-coding downstream 14645 8754468 ~ 8755236 (-)
G111514 NA non-coding downstream 19518 8750084 ~ 8750363 (-)
G111508 NA non-coding downstream 31739 8737939 ~ 8738142 (-)
G111505 NA non-coding downstream 37089 8731349 ~ 8732792 (-)
G111533 NA non-coding upstream 865 8783852 ~ 8784297 (-)
G111535 NA non-coding upstream 4245 8787232 ~ 8787572 (-)
G111576 NA non-coding upstream 118133 8901120 ~ 8901354 (-)
G111591 NA non-coding upstream 155197 8938184 ~ 8938387 (-)
G111044 NA other downstream 247120 8522002 ~ 8522761 (-)
G111047 LOC106574003 other downstream 264277 8500104 ~ 8505604 (-)
G110896 NA other downstream 444201 8324960 ~ 8325680 (-)
G111650 NA other upstream 267302 9050289 ~ 9050798 (-)
G111659 NA other upstream 284625 9067612 ~ 9068062 (-)
G111855 NA other upstream 656375 9439362 ~ 9439938 (-)
G111955 NA other upstream 851550 9634537 ~ 9635130 (-)
G112066 NA other upstream 978313 9761300 ~ 9761665 (-)
G111529 NA non-coding upstream 5293 8778113 ~ 8779056 (-)

Expression


Co-expression Network