LOC110516599 (LOC106606020)


Basic Information

Item Value
gene id LOC110516599
gene name LOC106606020
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8791636 ~ 8802003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937181.1
ATGAGGTGTTTACAGGTATCCAACCAAGGCCTGGAAGAAAGGATCCCTTCCTATGAGGAACTGGAAAAGCTGGAGAATGAGGAGGCTGGGGACAGACCCAAATGGGACAACAAGGCCCAGTACATGCTAACTATCGTAGGTTTCTGTGTGGGACTGGGGAACGTCTGGCGCTTCCCGTACCTTTGCCAGAGCCATGGGGGAGGTGCATTCATGATTCCTTTCCTGATCCTACTGGTTCTAGAAGGTGTTCCCCTGCTCCATCTGGAGTTTGCTATTGGTCAACGTCTAAGGAAAGGCAGTGTAGGTGTCTGGTCTGCCATCCATCCATACTTGACTGGCATTGGCATTGGTTCCATGTGTGTGTCCTTTCTGGTCAGCCTGTACTACAACACCATCATGGCCTGGGTGATGTGGTACTTCTTTAACTCCTTCCAAGAGACGCTGCCTTGGAGCCAATGTCCCCTCAATGCCAACATGACAGGCCTGGTGTCAGAGTGTGAAAGAAGCTCTCCAGTGGATTACTATTGGTACAGAGAGACCCTGAACACCACTCCAGACATAGATAACACAGGTGGGCTACAGTGGTGGATGGTCCTATGCCATGTGTCTGCCTGGGCGTTGCTGTTTATCTGCATAAGTCGAGGCATTGAGACTACTGGGAAGGCTGTGTATATCACCTCAACATTACCTTATGTGGTGCTGACCATCTTTCTGATCAGAGGCTTGACCTTGAAAGGCTCCTTGAATGGAGTGAAGTTCCTCTTCACCCCAGATaTGAATGAACTAATGAACCCAACGACTTGGCTTGATGCGGGTGCCCAGGTTTTCTATTCATTCTCTTTGGCCTTTGGAGGTCTGCTGTCTTTCTCCAGCTACAACTCAGTGCATAATAACTGTGAACAGGATGCAGTCATCATCTCTATCGTGAACGGAGCCACTGCTGTCTACGCTGCAACAGTCATTTACACCATCATTGGCTTCCGAGCCACAGAGAAGTTTGATGACTGTATTTCTGGAAATATCCTGACCCTGCTGAATACATTTGATCTCCCAGAGGGCAACGTCACTGAGAGCAACTATGATCAGGTTCTTCATAGTCTCAATGGAACATATCCAGAGGTCATTCAGGGGCTCAACTTGAAGACCTGTGATTTGAATTCTTTCCTTAGTGAGGGGGTTGAAGGAACTGGTCTGGCCTTTATCGTGTTCACAGAGGCCATCACTAAGATGCCTGTATCTCCTGTTTGGTCAGTCTTGTTCTTCATCATGCTCTTCTGTCTCGGCCTGTCCTCCATGTTTGGCAATATCGAAGGAGTTCTGGTACCACTTCAGGACCTGGGTGTTTTCCCCAAGAGTTGGCCCAAAGAAGCCATCGCTGGGATAACATGTGTCCTCTGCTGCCTTGTTGGATTAATATTTGTTCAAGGCTCAGGGAACTACTGGCTGTCCCTCTTTGACAGCTATGGCGGGTCCATTCCTCTGCTGATCATTGCATTCTGTGAGATGGTCGGGGTTGTGTACCTCTATGGTATTGATAGGTTCAACGATGATATTGAGTTCATGATCGGCCACAAGCCCAACCTCTTCTGGCAGATCACATGGAGATTTGTCAGCCCCGCCATCATGTTTGTCATCTTTGTGTTCTACTTTATCACTAAAGTCCAAGAAACACCCATGTACAAAGCCTGGAATCCTGAATCGGACAACTTCCCTACATTGGAGGAGAAGGAATATCCAACCTGGATCTTTGCTATAATCTTCATCCTGGCAGGAATCCCAGGTCTTTCTGTACCTCTTACGGCTATTTACAAATGTTTGAGGAACCGCTGCTGCAAGAAGGATAATGAGTTTAAACAAGATGACTTAAACACTATTGCCAAGCAAGTTCAACTGACGGATGAGGCTACCAAGAACAAACCAGACATCCCAGAGACAGCAGATGGAAGATAGTGATCAAATCACTAGCCAATTGTTGTTTTCATGACAGGCCTCCATTTATTTCCTTCATGCCACTGATAGCTGAAAGGAGTAGATACGTTTGATAGTTTTACAAGGTTGTATGGATGAGGTATGACAGAAAAGCCATCAGAGCTTACATTGATTGACACATTGTTGTAATTTTTGTGCTGAAAAGTCAACATTAAACTAAATTATATCCTTT

Function

NR:

description
sodium-dependent neutral amino acid transporter B(0)AT1-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05334 SLC6A19; solute carrier family 6 (neurotransmitter transporter) member 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937181.1 True 2161 mRNA 0.46 12 8791636 8802003

Neighbor

gene id symbol gene type direction distance location
LOC110519098 LOC106594466 coding downstream 8649 8769881 ~ 8782987 (-)
LOC110535184 LOC106605879 coding downstream 39472 8693136 ~ 8752164 (-)
LOC110506629 LOC106573674 coding downstream 278275 8507579 ~ 8513361 (-)
LOC118936301 LOC106595809 coding downstream 320114 8466107 ~ 8471522 (-)
LOC118937639 LOC106573719 coding downstream 362316 8423811 ~ 8429320 (-)
LOC110514444 LOC108270036 coding upstream 2199 8804202 ~ 8819077 (-)
LOC110506642 LOC106606082 coding upstream 272770 9074773 ~ 9087920 (-)
LOC110506677 c4 coding upstream 314563 9116566 ~ 9141714 (-)
LOC110534035 LOC106573444 coding upstream 386925 9188928 ~ 9211433 (-)
LOC110534043 LOC106606076 coding upstream 413380 9215383 ~ 9220273 (-)
G111535 NA non-coding downstream 4064 8787232 ~ 8787572 (-)
G111533 NA non-coding downstream 7339 8783852 ~ 8784297 (-)
G111529 NA non-coding downstream 12580 8778113 ~ 8779056 (-)
G111516 NA non-coding downstream 36400 8754468 ~ 8755236 (-)
G111514 NA non-coding downstream 41273 8750084 ~ 8750363 (-)
G111576 NA non-coding upstream 99117 8901120 ~ 8901354 (-)
G111591 NA non-coding upstream 136181 8938184 ~ 8938387 (-)
G111592 NA non-coding upstream 136444 8938447 ~ 8938680 (-)
G111613 NA non-coding upstream 177435 8979438 ~ 8980137 (-)
G111044 NA other downstream 268875 8522002 ~ 8522761 (-)
G111047 LOC106574003 other downstream 286032 8500104 ~ 8505604 (-)
G111650 NA other upstream 248286 9050289 ~ 9050798 (-)
G111659 NA other upstream 265609 9067612 ~ 9068062 (-)
G111855 NA other upstream 637359 9439362 ~ 9439938 (-)
G111955 NA other upstream 832534 9634537 ~ 9635130 (-)
G112066 NA other upstream 959297 9761300 ~ 9761665 (-)

Expression


Co-expression Network