LOC110514444 (LOC108270036)


Basic Information

Item Value
gene id LOC110514444
gene name LOC108270036
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8804202 ~ 8819077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937187.1
ATAACTTCTCGTGTCACTCTTCAGCTTGGTAAAGCAATCATCTACTAAACAAGTTCAGCTGAAAGGCTGTTTTGCAAAGTTGGCAACCAGTTTTTCCACACCTCAGCTAGTGTTCCAGCTACCGGTTACCTAGAGACCAGCCACACCACCTGTCACACTGCTGAACCTGGCCATCTACACCCGAGGAACCATGAGACTACAGCTGCCCAACCCAGGCCTGGAAGACAGGATCCTGTCCCATGAGGAGCTGGACAAGCTGGAGACGGaagaggctgggaggggagacAGGCCCAAATGGGACAACAAGACTCAATACATGCTCACCTGCGTGGGGTTCTGTGTGGGGCTGGGGAACGTATGGAGATTCCCTTACTTGTGCCAGAGTCATGGGGGAgGTGCATTCATGATTCCTTTCCTGATCCTACTGGTTCTAGAAGGTGTTCCCCTGCTCCATCTGGAGTTTGCTATTGGTCAACGTCTAAGGAAAGGCAGTTTAGGCGTGTGGTCAACAATTCATCCTTACTTAGCTGGAGTTGGCATAGCGTCCATGTTTGTTTCTTTGATGATCAGCCTGTACTACAACACCATCATGGCCTGGGTGATGTGGTACTTATTTAACTCCTTCCAAGAGACGCTGCCTTGGAGCCAATGTCCCCTCAATTACAATCTAACAGGCCTGGTGTCAGAGTGTGAGCAGAGCTCCCCAGTGGACTACTTCTGGTACAGAGAGACGCTGAACACCACCCCGGACATTGGTGCGAACGGGGGTCTGCAGTGGTGGATGGTGCTGTGTCTGGTCAGTGCCTGGGCCGTGCTCTATATCTGCATCATCCGAGGCATCGAGACCACTGGGAAGGCTGTGTATGTCACCTCAACGCTGCCCTACGTAGTGTTGAGCATTTTCCTGATCAGAGGTCTGACTTTGAAAGGCTCTTTGAGTGGAGTTGTGTTTCTCTTCACCCCGAACTTGACAGAGCTGACCAACCCAACTACCTGGCTGGATGCAGGTGCCCAGGTGTTCTATTCCTTCTCCATAGCATTTGGTGGACTCATCTCTTTTTCGAGCTACAACTCTGTGCATAACAACTGTGAACAGGATGCAGTGATCATCTCTGCCGTCAATGGCTTCACCTCCGTCTACGCTGCAACCGTCATCTACACCATCATTGGCTTCAGAGCCACAGAGAGATTTGACAACTGTCTTGGCGGAAATATCCTGGCGCTGCTGAATACATTTGATCTCCCCGAGGGAAACGTCACTGAGAGCAACTATGATCAGGTTCTCCAGAGTCTCAATGGAACATATCCAGAGGTCATTCAGGGACTCAACTTGAAGACCTGTGACTTGAACACTTTCCTCAGCGAGGGGGTTGAAGGAACTGGTCTGGCCTTTATCGTGTTCACAGAGGCCATCACTAAGATGCCTGCATCTCCTGTTTGGTCAGTCTTGTTCTTCATCATGCTCTTCTGTCTCGGCCTGTCCTCCATGTTTGGCAATATCGAAGGAGTTCTGGTACCACTTCAGGACCTGGGGGTTTTCCCCAAGAGTTGGCCCAAGGAGTCCACCACAGGGATAACATGTGTCCTCTGCTGCATTGTTGGACTGATATTTGTCCAAGGCTCAGGGAACTACTGGCTGTCACTCTTTGACAGCTTTGCTGGTTCCATTCCTCTGCTGATCATTGCATTCTGTGAGATGGTCGGGGTTGTGTACCTCTATGGTATTGATAGgtTCAACGATGATATTGAGTTCATGATCGGCCACAAGCCCAACTTCTTTTGGCAGATCACATGGAGATTTCTCAGCCCCGCCATCATGCTTGTCATCTTTGTGTTCTACTTTATCACTAAAGTCACCGAAACGCTCCTATATAAAACCTGGAATCCTGAATCGGAAAACTTCCCTACATTGGAGGAGAAGCCCTATCCAGCCTGGATCTATGTAATAATCTTTATCCTGGCAGGGATACCCAGTCTAGCTGTGCCTGGCACTGCTCTCTTCAGATGTTTACGGAGGAAGAGAAGTAGAAAGTCTGAACAGCAAGAGCTCAAAACAGTCTGTAACCAAATGGACGTGAACGACAAGGCTCAGGATGGAGAATCCCGTACCTGATTACCCGTATTAACTCACCACCAATaaaaactaaagaaaaacaaagCCTTTAATGTATATTAATTTTCATAAACGTATGTACTGTTATAATTTATTAATCATTGtttctttcatttctttcattctGTAAAGTGtgttgtgatttgatttgaatctgaCCGAGATATTTTTAGCATAGTATTGCTGTAGAACTTGTACACTGATTTGTCTATGAATGAAAACTGTCGTATCTGAGGATGCTTCTTAGATCGAGGA
>TU127245
AGGGGGTTGAAGGAACTGGTCTGGCCTTTATCGTGTTCACAGAGGCCATCACTAAGATGCCTGCATCTCCTGTTTGGTCAGTCTTGTTCTTCATCATGCTCTTCTGTCTCGGCCTGTCCTCCATGTTTGGCAATATCGAAGGAGTTCTGGTACCACTTCAGGACCTGGGGGTTTTCCCCAAGAGTTGGCCCAAGGAGTCCACCACAGG

Function

NR:

description
sodium-dependent neutral amino acid transporter B(0)AT1-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937187.1 False 2368 mRNA 0.48 12 8804202 8819077
TU127245 True 208 lncRNA 0.52 1 8806560 8806767

Neighbor

gene id symbol gene type direction distance location
LOC110516599 LOC106606020 coding downstream 2199 8791636 ~ 8802003 (-)
LOC110519098 LOC106594466 coding downstream 21215 8769881 ~ 8782987 (-)
LOC110535184 LOC106605879 coding downstream 52038 8693136 ~ 8752164 (-)
LOC110506629 LOC106573674 coding downstream 290841 8507579 ~ 8513361 (-)
LOC118936301 LOC106595809 coding downstream 332680 8466107 ~ 8471522 (-)
LOC110506642 LOC106606082 coding upstream 255696 9074773 ~ 9087920 (-)
LOC110506677 c4 coding upstream 297489 9116566 ~ 9141714 (-)
LOC110534035 LOC106573444 coding upstream 369851 9188928 ~ 9211433 (-)
LOC110534043 LOC106606076 coding upstream 396306 9215383 ~ 9220273 (-)
LOC110510828 LOC106606088 coding upstream 426368 9245445 ~ 9284745 (-)
G111535 NA non-coding downstream 16630 8787232 ~ 8787572 (-)
G111533 NA non-coding downstream 19905 8783852 ~ 8784297 (-)
G111529 NA non-coding downstream 25146 8778113 ~ 8779056 (-)
G111516 NA non-coding downstream 48966 8754468 ~ 8755236 (-)
G111514 NA non-coding downstream 53839 8750084 ~ 8750363 (-)
G111576 NA non-coding upstream 82043 8901120 ~ 8901354 (-)
G111591 NA non-coding upstream 119107 8938184 ~ 8938387 (-)
G111592 NA non-coding upstream 119370 8938447 ~ 8938680 (-)
G111613 NA non-coding upstream 160361 8979438 ~ 8980137 (-)
G111614 NA non-coding upstream 162022 8981099 ~ 8981612 (-)
G111044 NA other downstream 281441 8522002 ~ 8522761 (-)
G111047 LOC106574003 other downstream 298598 8500104 ~ 8505604 (-)
LOC118937639 LOC106573719 other downstream 378190 8423811 ~ 8429320 (-)
G111650 NA other upstream 231212 9050289 ~ 9050798 (-)
G111659 NA other upstream 248535 9067612 ~ 9068062 (-)
G111855 NA other upstream 620285 9439362 ~ 9439938 (-)
G111955 NA other upstream 815460 9634537 ~ 9635130 (-)
G112066 NA other upstream 942223 9761300 ~ 9761665 (-)

Expression


Co-expression Network