LOC110520725 (LOC106605921)


Basic Information

Item Value
gene id LOC110520725
gene name LOC106605921
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9090560 ~ 9101359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937224.1
TAAACCTGATGCACTACCTTGTCAGGGAACATTGCGACAAGGGTGAACCTAAAACATGTGTTATCTTTATAAACAAGAACGGTCACATTCTTAAACACCTACTACTAGGGAGTCTTAATAAGTCAGTCAACTAAGTTACAACGAGTGTCAGTTGCCTCCATTTCAGATGATTTTGTACTCGACTAGAACACAGGGTGTCACAGTTTGTATGTTTTGGTTAGATCTGAACGTTAGTAATGGACAGTTCCAACGATTTCAGTTCGACCACCCATTCTGAAGACTAGTGAAAAGCTACAGTCATGATGAGGAGCACTGCACTGTTCCGTCTCCTGTCCGTCTCAGGACTGTGTTACCTGACTCTGAGTATCTCCCCTCCTCAGTATCACTATATTAGCCTTCAAATGAATTATTGCCAAGCCCAGACTTACTGTAGAGACATTTACACTGACTTGGCAAACATCTACAACTCAGGGGATCTGGATAGACTTGTACAATTGGTACCGAATGGTACAGCCAGTGTCTGGATAGGACTGGAGTTTGGAGATGAATTTGAGTGGCACTGGTCATTACCAGATCAGAGAAAGATTGAGTTTTTCAACTGGAGGGCAGCAGAGCCGAAGCAAAACAATACTCAAGACAGCTGTGCTGCAATGGATCCAAACGGACAGTGGTTTGAGGATAACTGCCAAATCAAAAGAGGTTTTGTTTGCTTTGATGGGAAAAACGCTAGTAACAGTCACATCTTCATTGATGACAGCAAGACTTGGAGAGAGGCTCAAGACCACTGCCGGGGTACGTACACAGACCTGGCCAGCATACGGTCCAGAGAGGAAAACCATCACGTCCAGAACATGTCACTGTCCCAGAGCATGTGGATTGGTCTCTTCAAAGACccatggaagtggtcagatgggAGCAACTCCTCATACCGCTTCTGGAAGACCAATCAGCCTGACAACTTCAGAGGGGCCCAGAACTGTACTTCTGTTATACTCAACGATAACAAGTGGAATGACCAGTGGTGCAACATCAGTTGGGGGTTTGTCTGCCATGGTGAAATGAAGCGACCAACTACCCAGATGACACCTACAACCACACATACTGGGCCACAAACAACTCCTCCCGCAGCTACTGTGCTTGCCACTGCTGAACAGTCAACTACAGATGAAGTAACACCTAAGCTAACAACTACCCATTTTGTGCAGATCCAACATATTCTTTTAGATCTTTTACCAACCTCTGACCAAGCGACTACTGTAGGCTTACCTGTTCAAAACACTCCATCTACACCAGTACCAACTACATTCACTACCACAGACCAAGGTTCAATTGAACAGTTAACTACAAAATACCTAACTACCAAACATGGAACTACTGTTAAAAAACCAACTACATTCAATACCACAGTAAATGTTACTAAACAGTTGACTACTGAACTCCTaacgtctgacccactgactactgtacctgttcaaagCAATATCTCTATATCTGTACCAGCTTCATTGATTTCCACAGAACATGTTTCATCTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAGCTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGGTTCTACTGAACACACAACCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTACCTCGACTGCACCTGTCCAAAATACTCCCTCATCGTCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaACCAACTACATCCAATACCACAGTGCGTGTTTCTACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTACCTGTTGGAAACACTCCCTCAACACCAGTACCAACTGCGTTCAATACCACAGTGCATGTTTCTACTGAactcctaacctctgacccactgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGCTTCAACTGAAATGTTAACTACTGGATACTCAACTAGAGAGGAAGCAACTACTGGTTACTTACCTACAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCCCATTCAATACCACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGCTTCAACTGAATTGTTAACTACTGGATACTCAACTAGAGAGGAAGCAACTACTGGTTACTTACCTACAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCCCATTCAATACCACAGAATATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaagCAATATCTCTATGCCTATACCAGCTTCATTGATTTCCACAGAACATGTTTCAACTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCTATATCTGTACCAGCTTCATTGATTTCCACAGAACATGTTTCATCTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAACTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGTTTCTACTGAACACACAAGCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTACCTCGACTGCACCTGTCCAAAATAATCCCTCATCGTCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACCaactacattcaacaccacagaacatacttcaactgaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACCAACTACATCCAATACCACAGTGCGTGTTTCCACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTACCTGTTGGAAACACTCCCTCAACACCAGTACCAACTGCGTTCAATACCACAGTGCATGTTTCTACTGAactcctaacctctgacccactgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGCTTCAACTGAAATGTTAACTACTGGTTACTCAACTAGAGAGGAAGCAACTACTGGTTACTTACCTACAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCCCATTCAATACCACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACAaactacattcaacaccacagaacatacttcaactgaacacctaacctctgacccactgactactGTACCTGTTAAAAAACCAACTGCATTCAATATCACAGTAAATGTTACTAAACAGTTGACTACTGAACTCCTAACCTCTGACCAAGCGACTATTGTACCTGTTCAAAACAATATCTCTATATCTGTACCAGCTTCATTGATTTCCACAGAACATGTTTCATCTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCTATATCTGTACCAGCTTCATTGATTTCCACAGAACATGTTTCATCTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAACTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGGTTCTACTGAACACACAACCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTACCTCGACTGCACCTGTCCAAAATACTCCCTCATCGTCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAACTACATCCAATACCACAGAACATACTTCACCAGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACCaactacattcaacaccacagaacATACTTCAACTGAAATGTTAACTACTGGATACTTACCTATACGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCACATTCAACACAACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACAaactacattcaacaccacagaacATGCTTCAACTGAACAGTTAACtactgactaaaatacagtagaatagaatacagtatatacatatgagatgagt
>XM_036937231.1
TAAACCTGATGCACTACCTTGTCAGGGAACATTGCGACAAGGGTGAACCTAAAACATGTGTTATCTTTATAAACAAGAACGGTCACATTCTTAAACACCTACTACTAGGGAGTCTTAATAAGTCAGTCAACTAAGTTACAACGAGTGTCAGTTGCCTCCATTTCAGATGATTTTGTACTCGACTAGAACACAGGGTGTCACAGTTTGTATGTTTTGGTTAGATCTGAACGTTAGTAATGGACAGTTCCAACGATTTCAGTTCGACCACCCATTCTGAAGACTAGTGAAAAGCTACAGTCATGATGAGGAGCACTGCACTGTTCCGTCTCCTGTCCGTCTCAGGACTGTGTTACCTGACTCTGAGTATCTCCCCTCCTCAGTATCACTATATTAGCCTTCAAATGAATTATTGCCAAGCCCAGACTTACTGTAGAGACATTTACACTGACTTGGCAAACATCTACAACTCAGGGGATCTGGATAGACTTGTACAATTGGTACCGAATGGTACAGCCAGTGTCTGGATAGGACTGGAGTTTGGAGATGAATTTGAGTGGCACTGGTCATTACCAGATCAGAGAAAGATTGAGTTTTTCAACTGGAGGGCAGCAGAGCCGAAGCAAAACAATACTCAAGACAGCTGTGCTGCAATGGATCCAAACGGACAGTGGTTTGAGGATAACTGCCAAATCAAAAGAGGTTTTGTTTGCTTTGATGGGAAAAACGCTAGTAACAGTCACATCTTCATTGATGACAGCAAGACTTGGAGAGAGGCTCAAGACCACTGCCGGGGTACGTACACAGACCTGGCCAGCATACGGTCCAGAGAGGAAAACCATCACGTCCAGAACATGTCACTGTCCCAGAGCATGTGGATTGGTCTCTTCAAAGACccatggaagtggtcagatgggAGCAACTCCTCATACCGCTTCTGGAAGACCAATCAGCCTGACAACTTCAGAGGGGCCCAGAACTGTACTTCTGTTATACTCAACGATAACAAGTGGAATGACCAGTGGTGCAACATCAGTTGGGGGTTTGTCTGCCATGGTGAAATGAAGCGACCAACTACCCAGATGACACCTACAACCACACATACTGGGCCACAAACAACTCCTCCCGCAGCTACTGTGCTTGCCACTGCTGAACAGTCAACTACAGATGAAAAATGAAGCGACCAACTACCCAGATGACACCTACAACCACACATACTGGGCCACAAACAACTCCTCCCGCAGCTACTGTGCTTGCCACTGCTGAACAGTCAACTACAGATGAAGTAACACCTAAGCTAACAACTACCCATTTTGTGCAGATCCAACATATTCTTTTAGATCTTTTACCAACCTCTGACCAAGCGACTACTGTAGGCTTACCTGTTCAAAACACTCCATCTACACCAGTACCAACTACATTCACTACCACAGACCAAGGTTCAATTGAACAGTTAACTACAAAATACCTAACTACCAAACATGGAACTACTGTTAAAAAACCAACTACATTCAATACCACAGTAAATGTTACTAAACAGTTGACTACTCAACTCCTaacgtctgacccactgactactgtacctgttcaaagCAATATCTCTATATCTGTACCAGCTTCATTGATTTCCACAGAACATGTTTCATCTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAACTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGTTTCTACTGAACACACAACCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTACCTCGACTGCACCTGTCCAAAATAATCCCTCATCGTCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAACTACATCCAATACCACAGAACATACTTCACCAGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACAaactacattcaacaccacagaacatacttcaactgaacacctaacctctgacccactgactactGTACCTGTTAAAAAACCAGCTACATTCAATACCACAGAACATACTTCACCAGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACGACCTCAACACCTGTACCaactacattcaacaccacagaacatacttcaccagaacagttaactactgaacacctaacctctgacccactgactactgtacctgttcaaaaCACGACCTCAACACCTGTACCaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAGCTACATTCAATACCACAGAAAATACTTCACCAGAACAGTTAACTACTGAactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACCaactacattcaacaccacagaacatacttcaccagaacagttaactactgaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACCaactacattcaacaccacagaacatacttcaccagaacagttaactactgaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAgctacattcaacaccacagaacatacttcaactgaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAgctacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaACCAACTACATCCAATACCACAGTGCGTGTTTCTACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTTGGAAACACTCCCTCAACACCAGTACCAACCATGTTCAATGCCACAGTGCATGTTTCTACTGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAGCTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGTTTCTACTGAACACACAAGCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTACCTCGACTGCACCTGTCCAAAATAATCCCTCATCGTCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAgctacattcaacaccacagaacatacttcaccagaacagttaactactgaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAACACGACCTCAACACCTGTACCaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACCAACTACATCCAATACCACAGTGCGTGTTTCCACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTACCTGTTGGAAACACTCCCTCAACACCAGTACCAACTGCGTTCAATACCACAGTGCATGTTTCTACTGAactcctaacctctgacccactgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGCTTCAACTGAAATGTTAACTACTGGTTACTCAACTAGAGAGGAAGCAACTACTGGTTACTTACCTACAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCCCATTCAATACCACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACAaactacattcaacaccacagaacatacttcaactgaacacctaacctctgacccactgactactGTACCTGTTAAAAAACCAGCTACATTCAATACCACA
>TU127027
gCAATATCTCAATGCCTGTACCAACTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGGTTCTACTGAACACACAACCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTACCTCGACTGCACCTGTCCAAAATACTCCCTCATCGTCTGTACAaactacATTCAATACCACAGAACATACTTCACCAGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACGACCTCAACA

Function

NR:

description
mucin-5AC-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937224.1 False 5042 mRNA 0.43 4 9090560 9097627
XM_036937231.1 False 4810 mRNA 0.44 5 9090560 9101359
TU127027 True 368 lncRNA 0.38 2 9096834 9098911

Neighbor

gene id symbol gene type direction distance location
LOC110518388 LOC106598833 coding upstream 18111 8820359 ~ 9072449 (+)
LOC118937640 NA coding upstream 444599 8627771 ~ 8645961 (+)
LOC118936502 LOC106574003 coding upstream 584957 8480516 ~ 8505603 (+)
LOC110514591 LOC106595161 coding upstream 762830 8205100 ~ 8327730 (+)
LOC118944039 NA coding upstream 827829 8235903 ~ 8262731 (+)
LOC110506654 NA coding downstream 2153 9103512 ~ 9105845 (+)
LOC110520726 LOC106605921 coding downstream 4945 9106304 ~ 9110772 (+)
LOC110534026 LOC106606081 coding downstream 47814 9149173 ~ 9168951 (+)
LOC110535199 LOC106606086 coding downstream 74311 9175670 ~ 9189203 (+)
LOC118937651 LOC106606075 coding downstream 110715 9212074 ~ 9216058 (+)
G111368 NA non-coding upstream 23894 9066381 ~ 9066666 (+)
G111367 NA non-coding upstream 24648 9065546 ~ 9065912 (+)
G111365 NA non-coding upstream 34738 9055284 ~ 9055822 (+)
G111359 NA non-coding upstream 52032 9038323 ~ 9038528 (+)
G111254 NA non-coding downstream 15174 9116533 ~ 9124215 (+)
G111258 NA non-coding downstream 22892 9124251 ~ 9131154 (+)
G111257 NA non-coding downstream 37051 9138410 ~ 9144906 (+)
G111384 NA non-coding downstream 44351 9145710 ~ 9146042 (+)
G111386 NA non-coding downstream 47497 9148856 ~ 9149078 (+)
G110674 NA other upstream 986640 8073366 ~ 8103920 (+)
G110644 NA other upstream 1155423 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 1384071 7615910 ~ 7706660 (+)
pde11al LOC106573285 other upstream 1785915 7282430 ~ 7304709 (+)
LOC110535224 aif1 other downstream 120126 9221418 ~ 9229025 (+)
G111453 NA other downstream 228910 9330269 ~ 9331616 (+)
G111788 NA other downstream 338950 9440309 ~ 9444041 (+)
LOC110506952 LOC106606100 other downstream 600681 9701990 ~ 9742723 (+)
LOC118937659 NA other downstream 672844 9773574 ~ 9776807 (+)

Expression


Co-expression Network