LOC110520726 (LOC106605921)


Basic Information

Item Value
gene id LOC110520726
gene name LOC106605921
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9106304 ~ 9110772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598146.2
GGACAACTTTTGTATTATGTATGTTTCTTGTGCAACGTGaaaaacatacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcacattttatgtCCATAAAATAACATACTTCAACTGAACAGTTAACTACTGAactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAgctacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaACCAACTACATCCAATACCACAGTGCGTGTTTCTACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTTGGAAACACTCCCTCAACACCAGTACCAACCATGTTCAATGCCACAGTGCATGTTTCTACTGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAGCTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGTTTCTACTGAACACACAAGCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTACCTCGACTGCACCTGTCCAAAATAATCCCTCATCGTCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAgctacattcaacaccacagaacatacttcaccagaacagttaactactgaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAACACGACCTCAACACCTGTACCaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACCAACTACATCCAATACCACAGTGCGTGTTTCCACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTACCTGTTGGAAACACTCCCTCAACACCAGTACCAACTGCGTTCAATACCACAGTGCATGTTTCTACTGAactcctaacctctgacccactgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGCTTCAACTGAAATGTTAACTACTGGTTACTCAACTAGAGAGGAAGCAACTACTGGTTACTTACCTACAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCCCATTCAATACCACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACAaactacattcaacaccacagaacatacttcaactgaacacctaacctctgacccactgactactGTACCTGTTAAAAAACCAACTGCATTCAATATCACAGTAAATGTTACTAAACAGTTGACTACTGAACTCCTAACCTCTGACCAAGCGACTATTGTACCTGTTCAAAACAATATCTCTATATCTGTACCAGCTTCATTGATTTCCACAGAACATGTTTCATCTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCTATATCTGTACCAGCTTCATTGATTTCCACAGAACATGTTTCATCTGAACAGTTAACTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAACTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGGTTCTACTGAACACACAACCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTACCTCGACTGCACCTGTCCAAAATACTCCCTCATCGTCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaACCAGCTACATTCAATACCACAGAACATACTTCACAAGAACAGTTAACTACTGAactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACAAACTATATTCAACACCACAGAACATACTTCAACTGAAATGTTAACTACTGGATACTTACCTATACGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCACATTCAACACAACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAACACGACCTCAACGTCTGTACCAACTACATCCAATACCACAGTGCGTGTTTCCACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGCAACAACTGTTGGAAACACTCCCTCAACACCAGTACCAACCATGTTCAATGCCACAGTGCATGTTTCTACTGaacacctaacctctgacccactgactactGTTCCTGTTCAAAACAGTCCCCCAACGTCTATACCAACTACATTCAATAGAACAGACCAAGTTTCAACTGAACAGTTAACTACTGAACACCTAAATACAGAAAGTGCACTTACTGTACCTTTTCAAAGCATTATCTCATCGTCTGCACCAACTACCACAGTACATGCTTCAACTGAAATGTTAACTACTGAACACTCAACTACAGAGAAAGTGACTACTGATTTCTCACCTACAAGAGCTTCTAATGCTAATGTCCAAAACATTTCCTCAACGTCTTTACCAAGTACATTCAATACCACAGTGCATGTTTCAACTGAAGAGGCGACTACTAAACACCTTACTACTGAGAATGTAAAACATCAATCAACAACTGAGACTGCAGACACAGAAATGCAACACAGCATTACACAAGTGACTACTGAACATACTTTATAACCACAGTGGCTGAGACTGCCCCATACAGTACTACAGGGCCTGTCAGTCTCTCCACTGTTATGCCAAATGAAAACAGTCAAGGTTTAAGTCCAGGTAACTTTCATCATTATATCACaattattgacatgttgaaagcctAATAGTCTATTTTTTGTTTGGCTGTGGATTTATGTTGCTTCAAAGATGTTATATTACAGAGCAGAGGTATAAATGCATGCAAATCTA
>XR_005034916.1
GGACAACTTTTGTATTATGTATGTTTCTTGTGCAACGTGaaaaacatacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcacattttatgtCCATAAAATAACATACTTCAACTGAACAGTTAACTACTGAactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAgctacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaACCAACTACATCCAATACCACAGTGCGTGTTTCTACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTTGGAAACACTCCCTCAACACCAGTACCAACCATGTTCAATGCCACAGTGCATGTTTCTACTGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAGCTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGTTTCTACTGAACACACAAGCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTACCTCGACTGCACCTGTCCAAAATAATCCCTCATCGTCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAgctacattcaacaccacagaacatacttcaccagaacagttaactactgaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAACACGACCTCAACACCTGTACCaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACCAACTACATCCAATACCACAGTGCGTGTTTCCACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTACCTGTTGGAAACACTCCCTCAACACCAGTACCAACTGCGTTCAATACCACAGTGCATGTTTCTACTGAactcctaacctctgacccactgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGCTTCAACTGAAATGTTAACTACTGGTTACTCAACTAGAGAGGAAGCAACTACTGGTTACTTACCTACAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCCCATTCAATACCACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACAaactacattcaacaccacagaacatacttcaactgaacacctaacctctgacccactgactactGTACCTGTTAAAAAACCAACTGCATTCAATATCACAGTAAATGTTACTAAACAGTTGACTACTGAACTCCTAACCTCTGACCAAGCGACTATTGTACCTGTTCAAAACAATATCTCTATATCTGTACCAGCTTCATTGATTTCCACAGAACATGTTTCATCTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCTATATCTGTACCAGCTTCATTGATTTCCACAGAACATGTTTCATCTGAACAGTTAACTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAACTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGGTTCTACTGAACACACAACCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTACCTCGACTGCACCTGTCCAAAATACTCCCTCATCGTCTGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactgtacctgttcaaaaACCAGCTACATTCAATACCACAGAACATACTTCACAAGAACAGTTAACTACTGAactcctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACAAACTATATTCAACACCACAGAACATACTTCAACTGAAATGTTAACTACTGGATACTTACCTATACGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCACATTCAACACAACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACAaactacattcaacaccacagaacatacttcaccagaacagttaactactgaactcctaacctctgacccactgactactGTACCTGTTAAAAACACGACCTCAACGTCTGTACCAACTACATCCAATACCACAGTGCGTGTTTCCACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGCAACAACTGTTGGAAACACTCCCTCAACACCAGTACCAACCATGTTCAATGCCACAGTGCATGTTTCTACTGaacacctaacctctgacccactgactactGTTCCTGTTCAAAACAGTCCCCCAACGTCTATACCAACTACATTCAATAGAACAGACCAAGTTTCAACTGAACAGTTAACTACTGAACACCTAAATACAGAAAGTGCACTTACTGTACCTTTTCAAAGCATTATCTCATCGTCTGCACCAACTACCACAGTACATGCTTCAACTGAAATGTTAACTACTGAACACTCAACTACAGAGAAAGTGACTACTGATTTCTCACCTACAAGAGCTTCTAATGCTAATGTCCAAAACATTTCCTCAACGTCTTTACCAAGTACATTCAATACCACAGTGCATGTTTCAACTGAAGAGGCGACTACTAAACACCTTACTACTGAGAATGTAAAACATCAATCAACAACTGAGACTGCAGACACAGAAATGCAACACAGCATTACACAAGTGACTACTGAACATACTTTATAACCACAGTGGCTGAGACTGCCCCATACAGTACTACAGGGCCTGTCAGTCTCTCCACTGTTATGCCAAATGAAAACAGTCAAGGTTTAAGTCCAGACAACCTGATATTGATCCATGAGAACATGACGTGGAACGAGGCCCTGAGCTACTGCAGAGAGCACCACGTTGACCTGGTCTCGATCACTACAGAGCTGCTTCAGTACTGGGTGACAGAGAGGGCTGCCGACGCCACCTCATCCCACGTCTGGGTGGGCCTGCGCTTCACCTGTTCATTCCACTTCTGGTTCTGGATCAGGTCTGATGCAGGCTGCTACCAGAACTGGGCCCCCGGGCACGGCTCAGACAGCCAGCAGGACTGTGGGATTGCAGGGGCTGTACAGACCACCGGGAGGCAGCAATGGGTTAGTCTGGAGGAGAACCAGAGGCTCAACTTCATCTGCTACAAATGTTCTGGGGACAGTGGTGAGGGGTTGATACATCCCTGATTCGGACAACTTTTGTATTATGTATGTTTCTTGTGCAACGTGaaaaacatacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcacattttatgtccataaaataacatcaagttgATCAGGAACatagtgtagatattg

Function

NR:

description
LOW QUALITY PROTEIN: mucin-5AC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598146.2 False 3860 mRNA 0.42 1 9106304 9110163
XR_005034916.1 True 4282 mRNA 0.43 2 9106304 9110772

Neighbor

gene id symbol gene type direction distance location
LOC110506654 NA coding upstream 459 9103512 ~ 9105845 (+)
LOC110520725 LOC106605921 coding upstream 4945 9090560 ~ 9101359 (+)
LOC110518388 LOC106598833 coding upstream 33855 8820359 ~ 9072449 (+)
LOC118937640 NA coding upstream 460343 8627771 ~ 8645961 (+)
LOC118936502 LOC106574003 coding upstream 600701 8480516 ~ 8505603 (+)
LOC110534026 LOC106606081 coding downstream 38401 9149173 ~ 9168951 (+)
LOC110535199 LOC106606086 coding downstream 64898 9175670 ~ 9189203 (+)
LOC118937651 LOC106606075 coding downstream 101302 9212074 ~ 9216058 (+)
LOC110535224 aif1 coding downstream 110646 9221418 ~ 9229025 (+)
LOC110535231 LOC106573472 coding downstream 129124 9239896 ~ 9243612 (+)
G111368 NA non-coding upstream 39638 9066381 ~ 9066666 (+)
G111367 NA non-coding upstream 40392 9065546 ~ 9065912 (+)
G111365 NA non-coding upstream 50482 9055284 ~ 9055822 (+)
G111359 NA non-coding upstream 67776 9038323 ~ 9038528 (+)
G111254 NA non-coding downstream 5761 9116533 ~ 9124215 (+)
G111258 NA non-coding downstream 13479 9124251 ~ 9131154 (+)
G111257 NA non-coding downstream 27638 9138410 ~ 9144906 (+)
G111384 NA non-coding downstream 34938 9145710 ~ 9146042 (+)
G111386 NA non-coding downstream 38084 9148856 ~ 9149078 (+)
G110674 NA other upstream 1002384 8073366 ~ 8103920 (+)
G110644 NA other upstream 1171167 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 1399815 7615910 ~ 7706660 (+)
pde11al LOC106573285 other upstream 1801659 7282430 ~ 7304709 (+)
G111453 NA other downstream 219497 9330269 ~ 9331616 (+)
G111788 NA other downstream 329537 9440309 ~ 9444041 (+)
LOC110506952 LOC106606100 other downstream 591268 9701990 ~ 9742723 (+)
LOC118937659 NA other downstream 663431 9773574 ~ 9776807 (+)

Expression


Co-expression Network