LOC118937651 (LOC106606075)


Basic Information

Item Value
gene id LOC118937651
gene name LOC106606075
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9212074 ~ 9216058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937281.1
CTGTCAAAAGAGAATCACAAGACGGAGAGATGTGTCTGTACTTAAAACTGTGTCTCTCTATGCTTTTACAGACTAGACTTGGACTCCAGTCATCTGACCATAGGCCCACAAGAATCTTTGCTTCAATTGGAGACAGTGTGAGTTTACCATGTGGTACATCCTACATCAATTCCTGCTCCTCTGTTACCTGGAGTATAGTGAAAGATGGGTTTCCTAACCAATTAGAACTATCAGGCAAGGTGAAAACGGATGGTCCAAACTCAGGAAGAGCCAGTCGACTGAAAGTGGGACATGACTGCTCTCTACATATTCAACCTCTTGAAATAGATGATGGAAGACTTTACACCTGTGAAGATGGGGATACCAGTTCAAGTGTTTCTCTTCAGCTTCTCAACAGCCTTGTCCCACAATGCAACCAAAGTGAAATAAAGCTGAATTGGCTGAATGAGGCCAatacagtgctacagggagagagaTTTCAAACCGAACGTTCATCTGCTTGCCTCTCTACGCTGACCATCCGAGGTGTCAGGAAGACAGACCATCACAGGAAGTGGCGGTGTCAACtgattgaaggagaggttgtgaaGACGTCCCTCAGCTATACCACAGAAATTACAGgagGTATAGAGGAAGTGTTTGTCGCAGTGGGTGAGTCAGTATCACTTCCCTGTGCCACCCACTCCTCTCTCGAGGTGGGCAGCAGATTCCAGTGGACTCTGGGTCAAAGGTCACTGTCCAGTCTGTCTCGGTCAGGCGATGTCTCAGCTGGAACTCAGGGTCACCTTCCTGCATCTCACATCAGCCAAGACGGGTCTTTGGTCATCAGCAATGTGAAAACACTGCATTCTGGGCTCTACAACTGCTCGCAACAGAACAGAATCTTACTACACACTCTGGATGTATCTGCAGAGCATGCTACCACAGACGGAAACAATCTCACCCTGACCTGCTCACTCACCTGTGTGGAAGATTGTGGAGACTTCAATTTATCCTGGATTCACAGTGGCCAAGATGGGTTGCAGAGTGGCCCTATAGGACATAACAACACCCTCATCTCCAAACTCTTCCTCCCTGACCGCCAGGGCACAGAGAAGATAGCCTGCGCCGTGCTCAGAGAGGGGGTTGAAATGGCTGTAAAGGAGTGGACCATCCAGAGAGGTCGTGTTCTACCTGCAGTGGGATGGTCAGTCCTTCTGCTACTGCTGCTCTGTGCTGTTGGAGGGGGCGTGTATTGGAAGAGGCAGGGCAAGGGAAGTGCTGCTCAAGGAGAAGAACAGCAGACAACTGTTGCAATGACTCATCTCTATGACGAGATTCAAGATCAACCAATTCAACCTTCCGGAGTAACCAACAACAGTTTCTATGATCTTCTGCAGGCTGGGAACTGAGTGTAATGTCATGTCCTCTATCTTTAGGCTGTTAGTTGAGTTTTAAATCTAATTTGACTACTTTGTACTTGGCATTGTTTTGTGGTTTGGATTTCCCTTTATACGTGTCACCATGACATCAAGTCTATGCAGGTTGTTTTTTATGGtggaaataaattcataaaaagaAAATAACCTCTATAGAATATCACCAGTTACTACAGTTAAAAACCCCGACATGAGTTGGTTACAGGAACACATTCAGTATGACTCCTCAGTGTGGGGGGTTGATGGCTAAGTCATCCCACCTCCTGTCTTGAACATCACTCTGCTGACTTTCACATCCCACATGAAACCTGGTAGCTTCTCTTCAGCAGTGTAAAACTCTGTAGATGTATGGGACTGAGACAAGACACATCCCACATGAAACCTGGTACCTTCTCTTCAGCAGTGTAAAACTCTGTAGATGTATGGGACTGAGACAAGACACATAACACATGAGAGTGAACAGATAAGTGTGTTTATTTAATACAGGATGGCAGTGTGTGAGCATTAGCAATACAAGTAAAAACCCCAGAAcagcatgtctctctgtctggaacAGCTCCCAACTACACATCATTTGGTGTAGAAAAGCGTCAGCAAAAGTTGGTCCACCATGGGGTCACAAATAAAGGA
>TU127058
AGAATATCACCAGTTACTACAGTTAAAAACCCCGACATGAGTTGGTTACAGGAACACATTCAGTATGACTCCTCAGTGTGGGGGGTTGATGGCTAAGTCATCCCACCTCCTGTCTTGAACATCACTCTGCTGACTTTCACATCCCACATGAAACCTGGTAGCTTCTCTTCAGCAGTGTAAAACTCTGTAGATGTATGGGACTGAGACAAGACACATAACACATGAGAGTGAACAGATAAGTGTGTTTATTTAATACAGGATGGCAGTGTGTGAGCATTAGCAATACAAGTAAAAACCCCAGAAcagcatgtctctctgtctggaacAGCTCCCAACTACACATCATTTGGTGTAGAAAAGCGTCAGCAAAAGTTGGTCCACCATGGGGTCACAAATAAAGGAATATGTCCAATCAAATCAAGCTAAATACAATTGGTCACCTCATCCATTTGATGATTTCACAACTAAGATTGTTATTGTGTAATACTATGGAGGCTATACCAGGGGTTGAAAGATAAGAGTGTTATTGTGTAATACTATGGAGGCTATACCAGGGGTTGAAAGATAAGAGTGTTATTGTGTAAtactatgtaggctataccagggGTTGAAAGATAAGAGTGTTATTGTGTAAtactatgtaggctataccagggGTTGAAAGATAAGAGTGTTATTGTGTAATACTATGGAGGCTATACCAGGGGTTGAAAGATAAGATTGTTATTGTGTAAtactatgtaggctataccagggGTTGAAAGATAAGAGTGTTATTGTGTAAtactatgtaggctataccagggGTTGAAAGATAAGATTGTTATTGTGTAAtactatgtaggctataccagggGTTGAAAGATAAGAGTGTTATTGTGTAATACTATGGAGGCTATACCAGGGGTTGAAAGATAAGATTGTTATTGTGTAAtactatgtaggctataccagggGTTGAAAGATAAGAGTGTTATTGTGTAAtactatgtagGCTATACCAGGGGTTGAAAGATAAGTGGGTGAATATCATAAAAAAGCATTTACAGATGTTTTGTGAAGGGTTCGGTAAGACATGGTGTGTTGATTGAAAGATGATTATTCTTTTCACTGGCATTGA

Function

NR:

description
uncharacterized protein LOC110520729

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937281.1 False 2048 mRNA 0.46 8 9212074 9215140
TU127058 True 1120 lncRNA 0.38 3 9214665 9216058

Neighbor

gene id symbol gene type direction distance location
LOC110535199 LOC106606086 coding upstream 22871 9175670 ~ 9189203 (+)
LOC110534026 LOC106606081 coding upstream 43123 9149173 ~ 9168951 (+)
LOC110520726 LOC106605921 coding upstream 101302 9106304 ~ 9110772 (+)
LOC110506654 NA coding upstream 106229 9103512 ~ 9105845 (+)
LOC110520725 LOC106605921 coding upstream 110715 9090560 ~ 9101359 (+)
LOC110535224 aif1 coding downstream 6278 9221418 ~ 9229025 (+)
LOC110535231 LOC106573472 coding downstream 24756 9239896 ~ 9243612 (+)
LOC110520731 LOC106605982 coding downstream 94844 9309984 ~ 9315691 (+)
LOC118944051 LOC106573691 coding downstream 139882 9355022 ~ 9358422 (+)
LOC110519250 mroh1 coding downstream 230050 9445190 ~ 9482500 (+)
G111398 NA non-coding upstream 15578 9196245 ~ 9196496 (+)
G111394 NA non-coding upstream 40503 9171328 ~ 9171571 (+)
G111386 NA non-coding upstream 62996 9148856 ~ 9149078 (+)
G111384 NA non-coding upstream 66032 9145710 ~ 9146042 (+)
G111257 NA non-coding upstream 67168 9138410 ~ 9144906 (+)
G111422 NA non-coding downstream 3587 9218727 ~ 9223905 (+)
G111433 NA non-coding downstream 20209 9235349 ~ 9235558 (+)
G111405 NA non-coding downstream 30305 9245445 ~ 9247633 (+)
G111414 NA non-coding downstream 60871 9276011 ~ 9276847 (+)
G111417 NA non-coding downstream 62392 9277532 ~ 9278357 (+)
LOC110518388 LOC106598833 other upstream 174173 8820359 ~ 9072449 (+)
G110674 NA other upstream 1108154 8073366 ~ 8103920 (+)
G110644 NA other upstream 1276937 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 1505585 7615910 ~ 7706660 (+)
pde11al LOC106573285 other upstream 1907429 7282430 ~ 7304709 (+)
G111453 NA other downstream 115129 9330269 ~ 9331616 (+)
G111788 NA other downstream 225169 9440309 ~ 9444041 (+)
LOC110506952 LOC106606100 other downstream 486900 9701990 ~ 9742723 (+)
LOC118937659 NA other downstream 559063 9773574 ~ 9776807 (+)

Expression


Co-expression Network