LOC110520732 (LOC106605979)


Basic Information

Item Value
gene id LOC110520732
gene name LOC106605979
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9330271 ~ 9349305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937351.1
AAAGCACAGCGCCCCTCACAGGAATGGAGGTGCACATTGCCGCTAAACCAAGCATCGCCATATTGATGTCCCAACAACGTCGAGAGGACATATGACAGTGGGAATCCTAGTGATGACTCTACTGAGCCCGGTGCCCCCTGATTAGACTGGTTGGATGTACTCCTTAACAACTACAACAATCAGCCTCTACCAAACCAACGAAGCATCAGCTCTGCAGCGACCCCACCTGTCACCTGCAGCTTGGAGGAAACCTCCAAGGTGATCCAGAGAACATCCTGTGTATAATATGTCCGGCTCTGTCCCAAGCCGCTCTCGAGTTTACCCTGATGTAAACACACAGAGGCCTCGGGAGTACTGGGACTACGAGTCCCATGTGGTGGAATGGGGGAACCAAGATGACTACCAGCTGGTGCGCAAACTAGGACGAGGCAAATACAGTGAGGTGTTTGAAGCCATAAATATCACCAACAATGAGAAGGTTGTTGTCAAAATACTCAAGCCAGTCAAAAAGAAGAAAATCAAGAGAGAAATCAAGATTCTAGAAAACTTGCGAGGCGGTCCCAACATCATCTCACTTTTAGATATCGTCAAGGATCCTGTGTCTCGAACTCCCGCGCTGGTTTTTGAGCATGTCAACAACACTGATTtcaagCAACTGTATCAAACTTTATCAGACTTCGACATACGGTTCTACATGTTTGAAATATTGAAGGCCCTTGACTACTGTCACAGTATGGGGATCATGCACAGAGATGTCAAGCCACACAATGTGATGATTGATCATGAACACAGAAAGCTCCGCCTGATCGACTGGGGCTTGGCAGAGTTCTACCACCCTAACCAGGAGTACAATGTGAGAGTGGCCTCGCGCTACTTCAAAGGACCTGAGCTGCTCGTAGACTACCAGATGTATGACTACAGTTTAGACATGTGGAGTTTGGGCTGTATGTTGGCCAGCATGATCTTCAGGAAGGAGCCTTTCTTCCATGGACACGACAACTACGACCAGCTCGTACGGATTGCTAAAGTCCTCGGCACAGAGGACTTGTATGACTACATCGACAAGTACAACATTGAACTAGACCCGCGGTTTAATGACATTCTGGGCAGACACTCCCGTAAGAGGTGGGAGAGGTTTGTGCACAGTGAGAACCAGCACCTGGTGAGCACCGAGGCTCTGGACTTTCTGGACAAGCTGCTGCGTTACGACCACAACGCTCGCCTCACGGCCCGGGAGGCCATGGAACACCCCTACTTCTACTCCGTTGTTAAAGATCAGGGAAGGGGCAGCACTCCTGGAGGAATAGTTACCAGCTCCACTCCAGTCAGCTCTTCCAGTATGATGGCAGGTATCACCTCCACAAAGGCACTGGCTAACAACGCTGGATCACCTGTCATTTCTGCCCCCAACACTCTGGCCCCACAAGTCCCAGCGGCCGGGGCACAGCCCTGaaacctccaccccctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccccctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccccctcctcccagcGGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGAAACCTCCTCCCAGCGGCTGCCGGGGCACAGCCCTGaaacctccaccccctcctcccagcGGCTGCCGGGGCACAGCCCTGAAACCACCACCTCCTCATGGGACCTCCTCACCTATGTTTGTGTGGGCCCGTGGGTCGGTTCAGCCCACCCCACCCTCTACTATGTGTTGGCCTGGCCAGTGGGTTTCCTTTTTATTACGTTGAGAAGAATGACAGAGAAAAGATGTTGAAATTGCTTTTCCCTGTTCAGTTATATTTTGAGATCTGGACTTGACATcatgttttatttgtcacacctGTCTGGATGATTTGGTCTAGGAATTCTAATACAATGTAGacatgatgaagaagaagaagagaatggataataacatttattttgtatGTCCCAAATATACAGTCTAGCTTGAAACAGTTTGTTTGGGGATTCCTGCTGTTGCAATACACTGAACCTGTAGACAACTTCACAAAACGAGACAGGTTTCTCTGATGTAGCCCCCACTTGGCAGTGCTGGATAGTTGCTCACACACTACTGTTAAGTGCAGGAGTTACCGGTGTTTTGAAGTTGTTAGAAGCTATCGTACTTGGATTGGACATCTGTAGATACTCTACAGTAACTGTTAGGTTGCATGCACCAAATGCTGACTATCACAGGGTCAATAGTTTGCCAATTTGGTGTTACTTTTACTTCTGtatacatgtttgtttgttttttaatgcGGTCTCTTACACATGATTTTGAATACATAGGCAATTTTGTaactttttgtttttattttgggaGGAGTCTTATCACTTGCAAAAAAAAATCGACTTCATAAATAAACAATTTTAAACAGG

Function

NR:

description
casein kinase II subunit alpha-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K03097 CSNK2A; casein kinase II subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937351.1 True 2695 mRNA 0.51 15 9330271 9349305

Neighbor

gene id symbol gene type direction distance location
LOC118937655 pon2 coding downstream 1509 9322760 ~ 9328762 (-)
LOC110506813 LOC106573659 coding downstream 8617 9315853 ~ 9321654 (-)
LOC118944050 LOC106593475 coding downstream 27856 9284288 ~ 9302415 (-)
LOC110510828 LOC106606088 coding downstream 45526 9245445 ~ 9284745 (-)
LOC110534043 LOC106606076 coding downstream 109998 9215383 ~ 9220273 (-)
LOC110512181 LOC106605978 coding upstream 43641 9392946 ~ 9403493 (-)
LOC118937662 NA coding upstream 497225 9846044 ~ 9847233 (-)
LOC110507310 LOC106595913 coding upstream 561165 9910470 ~ 9913331 (-)
LOC110493960 LOC106606059 coding upstream 651431 10000730 ~ 10007883 (-)
trnaa-ugc-2 NA coding upstream 749597 10098902 ~ 10098977 (-)
G111706 NA non-coding downstream 145 9329123 ~ 9330126 (-)
G111703 LOC106596109 non-coding downstream 25470 9283895 ~ 9304801 (-)
G111734 NA non-coding downstream 53640 9274220 ~ 9276631 (-)
G111732 NA non-coding downstream 91363 9238646 ~ 9238908 (-)
G111758 NA non-coding upstream 23330 9372635 ~ 9372867 (-)
G111777 NA non-coding upstream 75928 9425233 ~ 9425519 (-)
G111780 NA non-coding upstream 79136 9428441 ~ 9428663 (-)
G111781 NA non-coding upstream 79837 9429142 ~ 9429354 (-)
G111782 NA non-coding upstream 80081 9429386 ~ 9429682 (-)
G111659 NA other downstream 262209 9067612 ~ 9068062 (-)
G111650 NA other downstream 279473 9050289 ~ 9050798 (-)
LOC110519098 LOC106594466 other downstream 557451 8769881 ~ 8782987 (-)
LOC110535184 LOC106605879 other downstream 593873 8693136 ~ 8752164 (-)
G111044 NA other downstream 807510 8522002 ~ 8522761 (-)
G111855 NA other upstream 90057 9439362 ~ 9439938 (-)
G111955 NA other upstream 285232 9634537 ~ 9635130 (-)
G112066 NA other upstream 411995 9761300 ~ 9761665 (-)
G112076 LOC105018850 other upstream 429706 9779011 ~ 9780455 (-)

Expression


Co-expression Network