LOC118944051 (LOC106573691)


Basic Information

Item Value
gene id LOC118944051
gene name LOC106573691
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9355022 ~ 9358422 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961592.1
tcaaggcttaaaaaatattatttaacctgtctcctccccttcatctaaattgattgatgtggatttaacaggtgacatcaataagagattcACCTTGATTCCCCTGCTCAGTCTATGTCACAGAAAGaccaggtgtttctaatgttacATACACTCACTGTATATGCTTATGCTATACTTTCAGAGTGCGGTATCAATTAATCCACTCATTGTGTAGGCCTACCCTCTTCTAAATTGCTGTAACAATGAGAAGGAAATGCCAGAGGCATGTTTTGTTTGCATCACTGACCACAGGAACCAGTCACCTATAATCAACATAGTCTAGAAAGAGAAGGTCTTTGTTTTGTACACCTCTTGAATGAACAGTCACATCTTGGGGGTATTTGTCTTCTAAGTCAGTGGGTTGTTTGTCGACTGACATTATAACGAGTCATTTGTCAACTGTAAACCTTTTTGTTTAAATGCTCATCTGATTCCTCAATCTTAAAACATTGCCACGGTCATGCACTGTTTCCTGCAGAGACACCTGACACAGCCCCCATTCTATCTCATAGAAGTGGGTCTGTGTCTATTGTCTCTGCGGTTCCAGCCAATCAGCTATAAGGACAGGTATAAAACCTCTGATGGTCTTTTAACAAAGAGATAGAGGACTCGTGTGATGACTTCCACCCACCATGGAGCTCTCCCTGTGTTCTCTGTCAGTTCTGACGCTAGTGGCTGTTGTGTTCATGGTACCAATGAAAGACAGAAGTGAGGATGTGTTAAGCTTTTTGAATGGTGCCCTTGATGTTGCTCCTGCTACTCAAAGCACCTCAGGAAAAATCAAAGGTCCCGAGAACACCTTTGGTAAACCAGCTCCAACCCCAGCAAGACCAAGTCCTTTAAGACCAACAGAGAACTCTGCAGAAATCTCTAATGTTACGCAGACTGCAAACTCTGCTTGTTTAACAGATGTTGTAGACTCAGATGCCAGATCCAAAGAGAAATGCAACTCCAATGATCTTACAGATGCAGAACGATCTGAAAGTAACTCAGCAGAAAGCAGAGaGGATTATGATGACTCTCTGGGATCTAATACAAAGATTACACAAACTGTGACAGATGACAGTAGCAGCGACGAGACTGACAGTTCTCCAAGTGATGTGAGAAAATACAAACAACCTCCAGGAAGGAGAACCATAAACCCAGACCATGTCGACAGCATGCAGACAACCACCAGGCAGGATCCAACCAATGGGAGCGAGGTGCTGGATAGAGAGACTCAGAGGGACCCcacagtggggagagagagaaccagcagAGTGCTCATTgatatcaacagtgaagaggatgTGATGGTGGGCTGTCAGGGTACTGTCTGTGTGCCCGGAGAGCAGGGGACTACAGTCAATGGAGGTGAAAATGATGAGAATAcaagtctaaacagtagagatagagatatccAAAGCCAAGAGGTCACTGGCACAGCCACGGAGCAGGCCCTACGTAGGGATAGTTGTAGGGGTGTAGTGAATGGAGTGTTGGACACAGCCAGATAA

Function

NR:

description
PREDICTED: dentin sialophosphoprotein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961592.1 True 1538 mRNA 0.44 11 9355022 9358422

Neighbor

gene id symbol gene type direction distance location
LOC110520731 LOC106605982 coding upstream 39331 9309984 ~ 9315691 (+)
LOC110535231 LOC106573472 coding upstream 111410 9239896 ~ 9243612 (+)
LOC110535224 aif1 coding upstream 126722 9221418 ~ 9229025 (+)
LOC118937651 LOC106606075 coding upstream 139882 9212074 ~ 9216058 (+)
LOC110535199 LOC106606086 coding upstream 165819 9175670 ~ 9189203 (+)
LOC110519250 mroh1 coding downstream 86768 9445190 ~ 9482500 (+)
LOC110506885 LOC106573706 coding downstream 190280 9548702 ~ 9551644 (+)
LOC110506952 LOC106606100 coding downstream 343568 9701990 ~ 9742723 (+)
LOC110520736 LOC106605972 coding downstream 386444 9744866 ~ 9757901 (+)
LOC110520735 LOC106573422 coding downstream 399906 9758328 ~ 9785173 (+)
G111460 NA non-coding upstream 4990 9349779 ~ 9350032 (+)
G111453 NA non-coding upstream 23406 9330269 ~ 9331616 (+)
G111454 NA non-coding upstream 24921 9329108 ~ 9330101 (+)
G111451 NA non-coding upstream 30683 9322870 ~ 9324339 (+)
G111446 NA non-coding upstream 46545 9308226 ~ 9308477 (+)
G111477 NA non-coding downstream 33342 9391764 ~ 9392169 (+)
G111778 NA non-coding downstream 68821 9427243 ~ 9427965 (+)
G111785 NA non-coding downstream 78178 9436600 ~ 9436829 (+)
G111786 NA non-coding downstream 80215 9438637 ~ 9439444 (+)
LOC110518388 LOC106598833 other upstream 317121 8820359 ~ 9072449 (+)
G110674 NA other upstream 1251102 8073366 ~ 8103920 (+)
G110644 NA other upstream 1419885 7898596 ~ 7935137 (+)
G111788 NA other downstream 81887 9440309 ~ 9444041 (+)
LOC118937659 NA other downstream 415781 9773574 ~ 9776807 (+)
G112697 NA other downstream 1453096 10811518 ~ 10826063 (+)
fbxo32 fbxo32 other downstream 1882310 11227497 ~ 11243074 (+)

Expression


Co-expression Network