LOC110512181 (LOC106605978)


Basic Information

Item Value
gene id LOC110512181
gene name LOC106605978
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9392946 ~ 9403493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937361.1
TATCTgtgtagaggcagagggaggctAACAGCACACTGAGGGGAACCCAGAGGAAACAGACGCTCACAATATAGCCAGCCAGGAGTGAAGGAGGGGTccaccttgagagagagagagagagaggtgagacagagaaagagagaggaagagagagagagagagagaggtggagagaagcagagaaagagcgagagatatCAAATAGTGATTTAATCTGAGTGTCTTGATCTCTTTTGTCCTCATGTCCAAGGATTAAGTAGAGGATCTACAATACTGGGGGGATCTGGTCTTTCTACAGGTCTCTATATGAGAgaggagtctcccacctgtcttGTAGATCTGGACTGATGTCTTTTACGATGGTGCGTACGGCTCCCCCAAGCCGCTTCCTCTTCTCCGACATCAGCATGATGtcagaggacgaggaggagaacGGCGGCAGCGAGAGCTCGGGCTCCGACTCCCAGAAGTCCTCCTTCCGTCTCAACGGCGGCTCCAACGGGTTTCAGATCAAGGTGGGAAGCAGGAAGAGGAAGTTCTGCGGAGTTGCCGGGAGGCTGGCGGGGCCCCCGATGGTGGCAGGGGCCCCGGTGGTGGAGGTGCGGCAGCGGAACGTGGCAAACGCTCGAGAGAGGGACCGCACCAACAGCGTGAACACGGCCTTCACTGCCCTGAGGACCCTCATCCCCACCGAGCCAGCTGACAGGAAGCTGTCCAAGATCGAGACTCTGCGGCTGGCGTCCAGCTACATCTCCCACCTGGGTAATGTGCTGCTGGTGGGCGAGGCGTGTGGGGATGGGCAGCCGTGCCACACCTCCACACCCCCATTCCACCACCACACCCTCCACAGTCTCAGCCCCTCGCCCGGCCGGGGCTCAGAGaaccagcccaaacacatctgTACTTTCTGCCTCAGCAAGCAGAGGAAAATGaacaaagacagagacagaaaaacaactgTCAGAAGATAACGCCTGAAGACCAGAAACATCCAGAGGATAAATATCCAACACTCTTGTGAAGGATCAGTTCAATTAGCCTATTCTTCAAATGAAAGTTGTAATTACAGTTGTGTacttaataataatacaatatttgtatcatgtgtatatatatatatatatatgtatatattgaaAGCACAATGGTGTATTTAAGACCATGGAGGATTTGATATGTGTGTTAAGGGAGGATGTGGCAGCAAAAAGTCCATGAAACATGGGATGATATATAGACTCATGACCATTTAGTTAATATCTATCCTTAAACTACTGGGCATTATAATGAACAGGCCGAGGAGGACAGCTCTTTCAACGGGTGCAGCCCAAATGGCActgtattccctatattgtgcactacttggGCTCTGGACACACAAATGACTCGTTACTGAAACTTCCACGGACTTCAGAGCACCTAAATATGACATAACACCACTCTAGAACCCTCCCTGGACTGTATGCCCTTCACTCTCATCAATACGTGCTGGATGTTCATGTTATTGATGTTCAACATATTGTGCTATTACGCTGATGGATCTGAAGTGTACTGGCTGAATCATGGGAGAAAGGCAATCCTTTAGGAAGAATCAGCAGTAGTTCAGTACCATGCAGACCCTGACATCCCCCACCCTTTCATCAATTACCAATCAGATGGATTTCTAAAGCTCTTCTCTTTTTTACATCAACAGTTGTTACAGAGTGCTTTTCAGAAGCACAAGCAGAAGCACAGCCCTCAGCCTCAGACAGTGGTGATGGTGACTGGCAGAGCAGAGGAACAGATCCTAGATTACATCTGCAGGTAGAGCTCTGGCAGTTTGCCTGTCCCGTCCCCTGACTGTCCTCTCGTTTACCTTTGGAATTCCATGtgctccctccgtctctcctcctcttctcctgcgtTCTTCCTTCTTTTTCCCAGGAGCGCTACTGACTCACAGGCTCTGTTGTGATGGCTTTACAATGTGTGCAGGGTTCACTCAGATTGTCCTCTGTCCTGCATCTTTGCTGCTTCCTTTTCTGTCCGCCATCCGTGACCCCTgtttgaagaagaagaagaggtccACTTCAATGTGCTATATCCATGGATGTCCAACTGCTCCTTGTCTTGTGCTTTTTGTCCGACCCCTCCAAAgacttacacacacatacagtggttTGAGAGCTCTGACAGATTTCGGTCCACCTCCTGAAAAATCATCAAGATCTTTTCATAAATAGTTGAACATTTGGAAATCTGGGCCAATGTTGTGTATTGTTtatgtgtttttgtattgtttatgtaTTGTTTGATAAAAATACGTTTTATGCTA

Function

NR:

description
basic helix-loop-helix transcription factor scleraxis-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937361.1 True 2311 mRNA 0.48 2 9392946 9403493

Neighbor

gene id symbol gene type direction distance location
LOC110520732 LOC106605979 coding downstream 43641 9330271 ~ 9349305 (-)
LOC118937655 pon2 coding downstream 64184 9322760 ~ 9328762 (-)
LOC110506813 LOC106573659 coding downstream 71292 9315853 ~ 9321654 (-)
LOC118944050 LOC106593475 coding downstream 90531 9284288 ~ 9302415 (-)
LOC110510828 LOC106606088 coding downstream 108201 9245445 ~ 9284745 (-)
LOC118937662 NA coding upstream 443037 9846044 ~ 9847233 (-)
LOC110507310 LOC106595913 coding upstream 506977 9910470 ~ 9913331 (-)
LOC110493960 LOC106606059 coding upstream 597243 10000730 ~ 10007883 (-)
trnaa-ugc-2 NA coding upstream 695409 10098902 ~ 10098977 (-)
LOC110507454 LOC106584706 coding upstream 858827 10262320 ~ 10267649 (-)
G111758 NA non-coding downstream 20079 9372635 ~ 9372867 (-)
G111706 NA non-coding downstream 62820 9329123 ~ 9330126 (-)
G111703 LOC106596109 non-coding downstream 88145 9283895 ~ 9304801 (-)
G111734 NA non-coding downstream 116315 9274220 ~ 9276631 (-)
G111777 NA non-coding upstream 21740 9425233 ~ 9425519 (-)
G111780 NA non-coding upstream 24948 9428441 ~ 9428663 (-)
G111781 NA non-coding upstream 25649 9429142 ~ 9429354 (-)
G111782 NA non-coding upstream 25893 9429386 ~ 9429682 (-)
G111784 NA non-coding upstream 26839 9430332 ~ 9430542 (-)
G111659 NA other downstream 324884 9067612 ~ 9068062 (-)
G111650 NA other downstream 342148 9050289 ~ 9050798 (-)
LOC110519098 LOC106594466 other downstream 620126 8769881 ~ 8782987 (-)
LOC110535184 LOC106605879 other downstream 656548 8693136 ~ 8752164 (-)
G111044 NA other downstream 870185 8522002 ~ 8522761 (-)
G111855 NA other upstream 35869 9439362 ~ 9439938 (-)
G111955 NA other upstream 231044 9634537 ~ 9635130 (-)
G112066 NA other upstream 357807 9761300 ~ 9761665 (-)
G112076 LOC105018850 other upstream 375518 9779011 ~ 9780455 (-)

Expression


Co-expression Network