LOC110506885 (LOC106573706)


Basic Information

Item Value
gene id LOC110506885
gene name LOC106573706
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9548702 ~ 9551644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586764.2
agagctagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaagtggagcgGTGATGGTCCATCAACTGACATTATTATTTTTCAGCCAAATGTAAATAGGCTACCAATCAGAGTTGTAAATAATTGGAAAGCAATAAATAACGCTGACAAGTGCTACCCATTTTTTTGTTGCACTCTTACAGTACAGCAGCTTTTCTCGTGTTTTTTGCATTTATCCTCTATTGGCACGCGGGAGAAAGAGGCGCACTCTGCAGGGTGCTTTCAGCTCGCTCCTCCGTCGTACGCGAGCCTCTGAGAGGGAGCTATCCAGTGCTGAAGTTGCATTTCTTCCCTTCGCAAGACACGGCGTTGCAGGTAGAACAGAGAAACCTAAGCACTACGGGTTGGCTGGGGGTTTGTTtgactgactgggtgtctgaTACTCTACGCAGCCAGGCATCCAAAGCTCAGCCTTAAATATCCAGCTCTACATTGGCGTTGCATGAGGACAGTAACCCTGCCCTGGACGGTTGTTGTTTCGGTGCAACACCAGAAACATGCCAAGGTCTTTCCTGGTTAAAAAGGTGAAGCTTGATGATTTTTCATCCAGTGATTTTGAGAGTTCTTATGGACGATCCAGGACCGACGTCAGTCTACGGATTCACGATAAAGGGTACATTAGTGACTACATCAGCCCGTCTGTCTACGATGGAGAAAGCGACGGTGCCATTAAAGTTCCCTCTCCGGAGCCACTCTACGATGGAATCCACAGCGTCTACGGCGCCCCAGACTCAGACCAGCCTGACAGTCCGCAGTCGGACGTCACCTCCGGATACATCAATGGGGACACCGCGGTGAGTGATTGCTACACGGTGGACGCGTTTTACATCACGGACGGAAGGTCACGGAGGAAAGTAATCAGCAGCCCCAGCAGCAGGAGCATACAGCGTCACACATGCAACGAATGTGGGAAAACCTACGCCACGTCTTCCAACCTGAGTAGGCATAAGCAGACCCACCGGAGCCTGGACAGCAAGATGGCCAAGAAGTGCGCAACCTGTGGGAAAGTGTACGTGTCCATGCCAGCAATGGCCATGCACCTGCTCACCCATGACCTCAAGCACAAGTGTGACATCTGTGGCAAAGCTTTCAGCAGACCTTGGCTACTGCAGGGCCACATGAGGTCACACACGGGTGAGAAGCCCTTTGGGTGCGCACACTGCGGAAAAGCGTTCGCCGACCGCTCCAACCTGCGCGCGCATATGCAGACTCACTCCGCTTTCAAGCATTTCAAATGCAAACGGTGCGACAAGACCTTCGCTCTCAAGTCCTACCTGAATAAGCACTACGAGTCCGCGTGCTTCAAAGGCGCGTTCTCGCCCTTGAGTCCTGATCTCGATGACTCTCCATGACGTCCACATTAAAAGTGCAGACAAAAACATTATATTTTTGGTTGACTAATTCTGCCAAACCTTTCCTAAAATCCACCTCAACTTCCAGTGGAACCACAATAATAGCACAATTTTTCTGTATTCTCCTTGAAATCCACCCGAAGGAATTACTGATGATCTTCGCATGCACTTAAaaatcctcttcctcctccagtcACGTGGATAGAATATACCTTCCACCGCGCGTAAATATGAAATCATATATTTTGAAATGTGACGAAGATGACAATACTGGATTGCTCCAAACAAAAGTCGAACATTTTAATGTTGGATAATAATGTACTGCTGCAACTGACCATACTCTCCGTTGAGGTAAATGCCATTTATGTttgtattaattaattaatctatttatttatgtatttatttatttatctatttatacATTAGGCTATTTATATGTATTTGTTTATATAGTATGTCTGACATATTGGTCTGTTTTTATCTGATACCACTACCTATTATTTGCACTTTAATGTGTGAATTTGCCAACCTCTCATGAACAGGCCAAAGCGTTGTCACTTATTCTTCGTTTACTACCATTTTAAATTATTGCATGCAAAAATGAAATCTATGCCAGTATCACAAAGCTTatgatttttttcttcttctccaaaATCTAGATAGTATCTGTTGGCAATATTTCTGTTGAAGCCACATGACGAATTATAAA

Function

NR:

description
transcriptional repressor scratch 1-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09219 SCRT; scratch

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586764.2 True 2137 mRNA 0.45 2 9548702 9551644

Neighbor

gene id symbol gene type direction distance location
LOC110519250 mroh1 coding upstream 66202 9445190 ~ 9482500 (+)
LOC118944051 LOC106573691 coding upstream 190280 9355022 ~ 9358422 (+)
LOC110520731 LOC106605982 coding upstream 233011 9309984 ~ 9315691 (+)
LOC110535231 LOC106573472 coding upstream 305090 9239896 ~ 9243612 (+)
LOC110535224 aif1 coding upstream 320402 9221418 ~ 9229025 (+)
LOC110506952 LOC106606100 coding downstream 150346 9701990 ~ 9742723 (+)
LOC110520736 LOC106605972 coding downstream 193222 9744866 ~ 9757901 (+)
LOC110520735 LOC106573422 coding downstream 206684 9758328 ~ 9785173 (+)
LOC118937659 NA coding downstream 221930 9773574 ~ 9776807 (+)
LOC110520749 LOC106606080 coding downstream 269486 9821130 ~ 9845619 (+)
G111786 NA non-coding upstream 109258 9438637 ~ 9439444 (+)
G111785 NA non-coding upstream 111873 9436600 ~ 9436829 (+)
G111778 NA non-coding upstream 120737 9427243 ~ 9427965 (+)
G111477 NA non-coding upstream 156533 9391764 ~ 9392169 (+)
G111840 NA non-coding downstream 50115 9601759 ~ 9602403 (+)
G111937 NA non-coding downstream 68468 9620112 ~ 9620393 (+)
G111954 NA non-coding downstream 82899 9634543 ~ 9634819 (+)
G111956 NA non-coding downstream 84481 9636125 ~ 9637610 (+)
G111968 yo84 non-coding downstream 102408 9654052 ~ 9654356 (+)
G111788 NA other upstream 104661 9440309 ~ 9444041 (+)
G111453 NA other upstream 217086 9330269 ~ 9331616 (+)
LOC110518388 LOC106598833 other upstream 510801 8820359 ~ 9072449 (+)
G110674 NA other upstream 1444782 8073366 ~ 8103920 (+)
G112697 NA other downstream 1259874 10811518 ~ 10826063 (+)
fbxo32 fbxo32 other downstream 1689088 11227497 ~ 11243074 (+)
elovl4a LOC106606161 other downstream 1709910 11260912 ~ 11275480 (+)

Expression


Co-expression Network