LOC110520749 (LOC106606080)


Basic Information

Item Value
gene id LOC110520749
gene name LOC106606080
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9821130 ~ 9845619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937399.1
ACAAAGTCGATAGAGAAACCGAACGAGTCTTCTGACATAATTTATTATAGCAGTTTTGTTAAGTAGGCAATGCAGCTTCTTAACTTCTACGACAGCAAATTAGAATGCACGAGGTTTTGAATTCTTTACAAAAGTAGGGGCAACTGCATTTTTCCAGTACGCATGATTTTGTATCCTTTCTGAAAGCAGGAAGCAGCACGCTCTTAATCGCAGTCAGACAGATAACAGCATTTCCTGGGAAGGTCAAATCAACTGCATTGTTTACAAAGGTGTTTTGAATGTGTCTTTCGGTGGCTACAAATTCATTCAAACGAATGTCAGTGACTTTGGCCCGTGATCTTGGATTACCGATGGACCAACAGAACAAATCCCATGCTTGGATGTGATTCCACCATTGTGAGCCTGATGTACAGAGGAGGAAGGACCGGTTCTGATGGCAGACCATCTTCCCTCAGGGCTACTGGAAGCGTGTGTTGTTGTCGGAGCCTCTGGGGATAAACTCAAGGATGTCTATCAGTCTCTACAGCAGGGCAACAGCACAACAGACCTCCTTATTTTAGACCCAGAGGTCTTGCAAGTCCACGTGCCTCCGTTTGTGACCAAAGAGAATGCAGATGAGTCTGGTGTCCCCAGAACCTTCAGTCGAGTCCAGTGCAGACGGTCCTTCATCAAGAAGAAGGAGAGGCTAGTGGTGGCTCCTAGTGGCCCTGGAGGGGCCGGGAGCAGTGAGGGGGCCACTGTCACGGAGGATGTCAGCGTCCCCAAGGACATCGACCTCATGGCCCTGCCCCAACTCTGCTTTCCAGGGGGGCTTCAAGTAACAAATGAACCAAAAGAAGAGCGTTTTCACTTTCTAGTCTTCACGGATGTGTTCGGTAACCAAACCCATGGAGTGGTTGTTCAGTGTTGTAGACCATTTCAGGAAGGGTCAGTGTTCTATCAGAATGGACACTGGTCGTCCACCAGGACCACTAAGCTCTACACTGCTTTTGCCATCTGTGTCATATCCAAGCATCCTTATTACAATGCTCTGAAGGACTGTCTGTCTTGTTTGCTGGCGCAGCTTAGAGCATGCAGGTTGTCTGAAGAGAGGGTGAAGGAATTTGCAGCCAAACTGTCTCTAGTGCCCATTCCACCCCCTGGACAACTACATGTGGTGTTCAACCTGAGACCCCTGATGATCGTACTGCCTTCCAGAGAGGATAAGGAACACCCCGCTGTAGACCTGGACCTCCATTTGCCCTTCCTGTGCTTTAGATCCAAACAGATTTTACAGATCATCACTGGTATTCTGATGGAGCAGAGGTTAGTGTTCTTCTCAGCTGACTGGGCCCGCCTCACCCTGGTGGCAGAGTGTTTCATGTTCTACATCCACCCCCTCCACTGGCAGCACCCCTACGTGCCCATCCTCTCAGCCCAGATGCTGGACTTCGTCATGGCCCCCACCGCCTTCCTCATGGGCTGCCACCTCAACCACTTTGAGGAGGTCGCTGCGGAAACAGACGACCTGATCTTGATTAATATTGATGATGGAACAGTGTCTTCTTCCTGCTCAGAGACTGTCGACCTACCAGACGTCCCCTTCGTTTCGGCAGAGTGTTTTACCAAGCgGAGGAAGGGCCTCCAGCTACAACATGATCTAGAGGTGTGTCACCAAGGGGCCGGCACAGACGTTAATGAGATGCGCATGCTGAGGAGACAATGGCAGCAGAACCTGAACTGGGAAATACAGAAGGTTACCTTGGAGCTCATTGTCAACATGTTTAGGGATGTCAGTGGTCACCTGAACTATGAACACCGAGTGTTTAACAGTGAAGAGTTCCTGAAGACCAGAGAGCTAGCTGACCTTCCCTTTTACAGAAAGGTCTTGGAGACACACATCTTTCATTCATTCCTGAAGGACCGCCTCAATAGGAAGATGGATGCTTTCACACGCATGGAAGTCAACACTCGCTCAGAGACACAGAAAATGAAGGCGATGACAGACAACCCCAGGAGGCCCACCATGCAGGAAATGGCCAGGAAGTATAGCAGCGACCCAGAGATCCGTCTGAACAAGAGGCTGGGGATGAGCCTCCCCAACCTGGGAGAGGAGCGCCATCTCAACCTCGTCAGACAAACCTCCCTCAAGAAGACCATTATCCCTGAAAGTGCCTTCAAGATCCCGCCCAAGCCTGTGAAGATCTTCAAGCTGCCAGAATTTCCTCCTCCCATGGTGCACCACCATGTCCAGAACTACTATGGAGAGTTGATCATACTACTGGGGAAGGCCATCTCCTGTGTTCCTCCTGAGAACTCCACCCTCCTGGCCAGGTACTTCTACCTGCGCGGCTTCATGAACACGCTGTGTTCCAAGCGTCTTGACGCCCTCAGTGACTTCCAGAACCTCTACAAGACGGACATCGAGATCTTCCCCACCGACCTGGTAAAGGCGCTAGTGGACTCGCTGCAGAAGGACGAGTTCTCCCAGGTGGACCGGCGGCCAGAGCTCAAGCGGCTCATCTTCAAGGTGAAGACAGACAACGAGAGGGTGCTGGTCCAAGATGACGACCACGTGAAGAAGTTCCAGCTCCCTAAGACCCACATGCTGCAGGAGGACTTTGTGAAGCGCATCCAGGAGTCTGGGATTGTGAAAGACGTCGCCACCATCCATAGACTGTTTGAGGCCCTCACTGTGGGGCAACAGAAGCAGATTGACCCAGAGGTGTTCCGTGTGTTCTACACCTTCTGGAAGGAGACGGAGGTGGAGGCCCAGGATGTTCACCTACCAGCTGAGGTCATGGAGCACCTGGACAACAACGAGTGTGTCTACAAGCTGTCCTGCTCCGTCAAAACCAACCAGGGAGTGGGTAAGATCGCCATGACACAGAAGAGGCTGTTCCTGCTCACTGACGGGAGGCCTGGGTTTATCGAGATCACCAAGTTCAGAGACATAAAGGAGGTGAACATCTCCTTTGCTCCTTTCCTGCTGCTGAGGATCCCGTCTCTGAAGATCAAGTGCAGTCTGAGGAAGGAGGTGTTTGAGGCCAACCTGAAGTCTGCGTGTGACCTGTGGAATCTCATGGTCAGAGAGATGTGGGCTGGGAGGACGATGGCAGACGACCACAAGGATCCTCAGTACATGCAGCAGGCTTTGACTAACGTCTTGCTCATGGATGCTGTGGTTGGCTGCCTTCAGACCCAGAAGGCCATATTTGCCGCCTCCAAACTGGCATACTTTGACAGAGTGAAACATGAAGTTCCTGTGATGGTTCCAAAGACAACATTGGAGACGTTGAAACACAAGATCAATCCATCACTAGACCTCCCAGCCCCACAGACTGTACATGTCTTACTCTACACAccaggtgaggggaaacagacggCTGACTTTCTGTTACTCTACACAccagGCCAGTTGAGTTACTCGGAGGCAGACGGAGATGGGAACCCCAAGCTGTGGTGTGCCCTCAGTGGTGGGAGGGTGGTTGTGTTTGATGCAGCCAGCTGGTCCATGCAGCAGAACTGTGTTCAAGTGGGATCCTCCCAACTGAACTGCATGCTGGGATTGGACCAGGATCAAGTATGGATTGGCTCCCAGGATTCCATCATTTACATAATTGACAGTCGCAGCATGTCCTGCAATAAGCAGCTGACAGAGCACAGGCATGAGGTTATGGACTTTGCCCTGGAGGAGAGTGACAAGATGAGacAGACATACTCCTGTAGTGCCGATGGAACAGTCATTCTGTGGGACCTCTCAACGCTAAAAGTGAAAAagcagtttcaactgacctgtgATAGGCTTATGTCCATTCAGCTCTTCAATGGAACACTGTGGTGCTGTGCCAGAGACGGCATCGTTGAACTGAGGAAGAACGGAACCCCACATCGTAAGATGACACTTCCTGAGGATCTACGGAGCATTCCCACTGAGTTCAGCAGCCTCATCCTCTTCTTAGAGAGGGGCCAGTTGTGGACGAGCTGTTCTGATTCTGACGAGCTCTGTCTCTGGCACTGTAAAGACCTGACCAAGCCTTTCCTGAGGGTGCGGCTACAGAACTGTACAGGGGTCAACTGTATGATCAAGGTTAAGAATCAGATCTGGGTTGGCTGCAGCGGGCCGAGCCCTGACCAGTGCAGGATGAGTGGGAAGATCTACATAGTGGACACAGAGAGCCACAGTGTAGAGAAGGAGCTGATggcccacacagacagtgtccaGGCACTGTGCTCTGCAGAGGGCCGCTATGTACTCAGTGGCTCCGCCTGCCAGGATGGCAAAATCGCCATTTGGAAGGTTGAGTAGAGGACGAGTAGCCTGGTCCAGTATCTGTTTGTGTGGTTTTGCCAACTCTTTTAAGTGAATGAAATGTTTGGCACAACAATGACAGGAGTTTCTTAAACAGCAGAAATAGATGTGGGACCAGGTTAGAGGAAGAGCCCTGCAGACCCCGAGGAGTCCTACAGGTCTGAAGAGGCTatagccctcaaactcaactctggacctggaagccagttccactgctttgtttcattgttcccctctaatcagggactgatttagacctgggactccaggtgggtgattcccctctaat
>XM_036937401.1
CAAAGTCGATAGAGAAACCGAACGAGTCTTCTGACATAATTTATTATAGCAGTTTTGTTAAGTAGGCAATGCAGCTTCTTAACTTCTACGACAGCAAATTAGAATGCACGAGGTTTTGAATTCTTTACAAAAGTAGGGGCAACTGCATTTTTCCAGTACGCATGATTTTGTATCCTTTCTGAAAGCAGGAAGCAGCACGCTCTTAATCGCAGTCAGACAGATAACAGCATTTCCTGGGAAGGTCAAATCAACTGCATTGTTTACAAAGGTGTTTTGAATGTGTCTTTCGGTGGCTACAAATTCATTCAAACGAATGTCAGTGACTTTGGCCCGTGATCTTGGATTACCGATGGACCAACAGAACAAATCCCATGCTTGGATGTGATTCCACCATTGTGAGCCTGATGTACAGAGGAGGAAGGACCGGTTCTGATGGCAGACCATCTTCCCTCAGGGCTACTGGAAGCGTGTGTTGTTGTCGGAGCCTCTGGGGATAAACTCAAGGATGTCTATCAGTCTCTACAGCAGGGCAACAGCACAACAGACCTCCTTATTTTAGACCCAGAGGTCTTGCAAGTCCACGTGCCTCCGTTTGTGACCAAAGAGAATGCAGATGAGTCTGGTGTCCCCAGAACCTTCAGTCGAGTCCAGTGCAGACGGTCCTTCATCAAGAAGAAGGAGAGGCTAGTGGTGGCTCCTAGTGGCCCTGGAGGGGCCGGGAGCAGTGAGGGGGCCACTGTCACGGAGGATGTCAGCGTCCCCAAGGACATCGACCTCATGGCCCTGCCCCAACTCTGCTTTCCAGGGGGGCTTCAAGTAACAAATGAACCAAAAGAAGAGCGTTTTCACTTTCTAGTCTTCACGGATGTGTTCGGTAACCAAACCCATGGAGTGGTTGTTCAGTGTTGTAGACCATTTCAGGAAGGGTCAGTGTTCTATCAGAATGGACACTGGTCGTCCACCAGGACCACTAAGCTCTACACTGCTTTTGCCATCTGTGTCATATCCAAGCATCCTTATTACAATGCTCTGAAGGACTGTCTGTCTTGTTTGCTGGCGCAGCTTAGAGCATGCAGGTTGTCTGAAGAGAGGGTGAAGGAATTTGCAGCCAAACTGTCTCTAGTGCCCATTCCACCCCCTGGACAACTACATGTGGTGTTCAACCTGAGACCCCTGATGATCGTACTGCCTTCCAGAGAGGATAAGGAACACCCCGCTGTAGACCTGGACCTCCATTTGCCCTTCCTGTGCTTTAGATCCAAACAGATTTTACAGATCATCACTGGTATTCTGATGGAGCAGAGGTTAGTGTTCTTCTCAGCTGACTGGGCCCGCCTCACCCTGGTGGCAGAGTGTTTCATGTTCTACATCCACCCCCTCCACTGGCAGCACCCCTACGTGCCCATCCTCTCAGCCCAGATGCTGGACTTCGTCATGGCCCCCACCGCCTTCCTCATGGGCTGCCACCTCAACCACTTTGAGGAGGTCGCTGCGGAAACAGACGACCTGATCTTGATTAATATTGATGATGGAACAGTGTCTTCTTCCTGCTCAGAGACTGTCGACCTACCAGACGTCCCCTTCGTTTCGGCAGAGTGTTTTACCAAGCgGAGGAAGGGCCTCCAGCTACAACATGATCTAGAGGTGTGTCACCAAGGGGCCGGCACAGACGTTAATGAGATGCGCATGCTGAGGAGACAATGGCAGCAGAACCTGAACTGGGAAATACAGAAGGTTACCTTGGAGCTCATTGTCAACATGTTTAGGGATGTCAGTGGTCACCTGAACTATGAACACCGAGTGTTTAACAGTGAAGAGTTCCTGAAGACCAGAGAGCTAGCTGACCTTCCCTTTTACAGAAAGGTCTTGGAGACACACATCTTTCATTCATTCCTGAAGGACCGCCTCAATAGGAAGATGGATGCTTTCACACGCATGGAAGTCAACACTCGCTCAGAGACACAGAAAATGAAGGCGATGACAGACAACCCCAGGAGGCCCACCATGCAGGAAATGGCCAGGAAGTATAGCAGCGACCCAGAGATCCGTCTGAACAAGAGGCTGGGGATGAGCCTCCCCAACCTGGGAGAGGAGCGCCATCTCAACCTCGTCAGACAAACCTCCCTCAAGAAGACCATTATCCCTGAAAGTGCCTTCAAGATCCCGCCCAAGCCTGTGAAGATCTTCAAGCTGCCAGAATTTCCTCCTCCCATGGTGCACCACCATGTCCAGAACTACTATGGAGAGTTGATCATACTACTGGGGAAGGCCATCTCCTGTGTTCCTCCTGAGAACTCCACCCTCCTGGCCAGGTACTTCTACCTGCGCGGCTTCATGAACACGCTGTGTTCCAAGCGTCTTGACGCCCTCAGTGACTTCCAGAACCTCTACAAGACGGACATCGAGATCTTCCCCACCGACCTGGTAAAGGCGCTAGTGGACTCGCTGCAGAAGGACGAGTTCTCCCAGGTGGACCGGCGGCCAGAGCTCAAGCGGCTCATCTTCAAGGTGAAGACAGACAACGAGAGGGTGCTGGTCCAAGATGACGACCACGTGAAGAAGTTCCAGCTCCCTAAGACCCACATGCTGCAGGAGGACTTTGTGAAGCGCATCCAGGAGTCTGGGATTGTGAAAGACGTCGCCACCATCCATAGACTGTTTGAGGCCCTCACTGTGGGGCAACAGAAGCAGATTGACCCAGAGGTGTTCCGTGTGTTCTACACCTTCTGGAAGGAGACGGAGGTGGAGGCCCAGGATGTTCACCTACCAGCTGAGGTCATGGAGCACCTGGACAACAACGAGTGTGTCTACAAGCTGTCCTGCTCCGTCAAAACCAACCAGGGAGTGGGTAAGATCGCCATGACACAGAAGAGGCTGTTCCTGCTCACTGACGGGAGGCCTGGGTTTATCGAGATCACCAAGTTCAGAGACATAAAGGAGGTGAACATCTCCTTTGCTCCTTTCCTGCTGCTGAGGATCCCGTCTCTGAAGATCAAGTGCAGTCTGAGGAAGGAGGTGTTTGAGGCCAACCTGAAGTCTGCGTGTGACCTGTGGAATCTCATGGTCAGAGAGATGTGGGCTGGGAGGACGATGGCAGACGACCACAAGGATCCTCAGTACATGCAGCAGGCTTTGACTAACGTCTTGCTCATGGATGCTGTGGTTGGCTGCCTTCAGACCCAGAAGGCCATATTTGCCGCCTCCAAACTGGCATACTTTGACAGAGTGAAACATGAAGTTCCTGTGATGGTTCCAAAGACAACATTGGAGACGTTGAAACACAAGATCAATCCATCACTAGACCTCCCAGCCCCACAGACTGTACATGTCTTACTCTACACAccagGCCAGTTGAGTTACTCGGAGGCAGACGGAGATGGGAACCCCAAGCTGTGGTGTGCCCTCAGTGGTGGGAGGGTGGTTGTGTTTGATGCAGCCAGCTGGTCCATGCAGCAGAACTGTGTTCAAGTGGGATCCTCCCAACTGAACTGCATGCTGGGATTGGACCAGGATCAAGTATGGATTGGCTCCCAGGATTCCATCATTTACATAATTGACAGTCGCAGCATGTCCTGCAATAAGCAGCTGACAGAGCACAGGCATGAGGTTATGGACTTTGCCCTGGAGGAGAGTGACAAGATGAGacAGACATACTCCTGTAGTGCCGATGGAACAGTCATTCTGTGGGACCTCTCAACGCTAAAAGTGAAAAagcagtttcaactgacctgtgATAGGCTTATGTCCATTCAGCTCTTCAATGGAACACTGTGGTGCTGTGCCAGAGACGGCATCGTTGAACTGAGGAAGAACGGAACCCCACATCGTAAGATGACACTTCCTGAGGATCTACGGAGCATTCCCACTGAGTTCAGCAGCCTCATCCTCTTCTTAGAGAGGGGCCAGTTGTGGACGAGCTGTTCTGATTCTGACGAGCTCTGTCTCTGGCACTGTAAAGACCTGACCAAGCCTTTCCTGAGGGTGCGGCTACAGAACTGTACAGGGGTCAACTGTATGATCAAGGTTAAGAATCAGATCTGGGTTGGCTGCAGCGGGCCGAGCCCTGACCAGTGCAGGATGAGTGGGAAGATCTACATAGTGGACACAGAGAGCCACAGTGTAGAGAAGGAGCTGATggcccacacagacagtgtccaGGCACTGTGCTCTGCAGAGGGCCGCTATGTACTCAGTGGCTCCGCCTGCCAGGATGGCAAAATCGCCATTTGGAAGGTTGAGTAGAGGACGAGTAGCCTGGTCCAGTATCTGTTTGTGTGGTTTTGCCAACTCTTTTAAGTGAATGAAATGTTTGGCACAACAATGACAGGAGTTTCTTAAACAGCAGAAATAGATGTGGGACCAGGTTAGAGGAAGAGCCCTGCAGACCCCGAGGAGTCCTACAGGTCTGAAGAGGCTatagccctcaaactcaactctggacctggaagccagttccactgctttgtttcattgttcccctctaatcagggactgatttagacctgggactccaggtgggtgattcccctctaat

Function

NR:

description
DENN domain-containing protein 3-like

GO: NA

KEGG:

id description
K20162 DENND3; DENN domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937399.1 False 4580 mRNA 0.51 25 9821130 9845619
XM_036937401.1 True 4534 mRNA 0.51 25 9821131 9845619

Neighbor

gene id symbol gene type direction distance location
LOC110520735 LOC106573422 coding upstream 35957 9758328 ~ 9785173 (+)
LOC118937659 NA coding upstream 44323 9773574 ~ 9776807 (+)
LOC110520736 LOC106605972 coding upstream 63229 9744866 ~ 9757901 (+)
LOC110506952 LOC106606100 coding upstream 78407 9701990 ~ 9742723 (+)
LOC110506885 LOC106573706 coding upstream 269486 9548702 ~ 9551644 (+)
LOC110507293 LOC106606028 coding downstream 3515 9847951 ~ 9983302 (+)
LOC110493963 LOC106606027 coding downstream 161439 10007058 ~ 10014363 (+)
LOC110507380 LOC106573899 coding downstream 174967 10020205 ~ 10035867 (+)
LOC110520763 pgcp coding downstream 190645 10036264 ~ 10074921 (+)
LOC110507402 LOC106595324 coding downstream 276826 10122445 ~ 10150796 (+)
G112085 NA non-coding upstream 6785 9814076 ~ 9814345 (+)
G112084 NA non-coding upstream 9186 9811585 ~ 9811944 (+)
G112083 NA non-coding upstream 15202 9801688 ~ 9805928 (+)
G112082 NA non-coding upstream 28247 9792609 ~ 9792883 (+)
G112081 NA non-coding upstream 30517 9790115 ~ 9790613 (+)
G112080 NA non-coding downstream 452 9846071 ~ 9847210 (+)
G112119 NA non-coding downstream 49278 9894897 ~ 9895609 (+)
G112162 NA non-coding downstream 138824 9984443 ~ 9984658 (+)
G112163 NA non-coding downstream 139279 9984898 ~ 9985473 (+)
G111788 NA other upstream 377089 9440309 ~ 9444041 (+)
G111453 NA other upstream 489514 9330269 ~ 9331616 (+)
LOC110535224 aif1 other upstream 592105 9221418 ~ 9229025 (+)
G112697 NA other downstream 965899 10811518 ~ 10826063 (+)
fbxo32 fbxo32 other downstream 1395113 11227497 ~ 11243074 (+)
elovl4a LOC106606161 other downstream 1415935 11260912 ~ 11275480 (+)
G113285 NA other downstream 1569312 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 1632357 11477976 ~ 11482741 (+)

Expression


Co-expression Network