LOC110493963 (LOC106606027)


Basic Information

Item Value
gene id LOC110493963
gene name LOC106606027
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10007058 ~ 10014363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034956.1
GCTCTGAGCCAGCTGTCCCTGTGTTTAGGAGGAATAACGTATCTTGGATTTAGCAATACCAGATGCAagcctattgttattttactcaCATATGGCACTTTTTTGCGACAGGTTGAGAAGTTCGTTCGGGAAGCACGAGCTAGTCTCCTGCTAGCGGCATAGAAGTTTGTTCGCTAACGTTAGCAGTTAGCTAACTTACTAGCTAGCGCCTTGTTTGCGTGCTAACTAGCTAaataaaggggatacctagttagtTTTACAACTgcatgcattcaactgaaatgtgtcttctgaatttaacccaacccctctgaatcaaagaggggctgccttaatcgacatctacgtcttcggcgcccgggaaacagtgggttaactgccttgctcagggtcagaacgacagctttttgtcagctcggggatttgatccagcattTTACCCGACTTTGGACTGAAACGGTTGTATGATTTTGCAGAACAGTGCTGATAAGTTTACTAGCTACCTAGCCTACGTTAGTGATTCTGTTCCGGATGCAAGTGGAATAACCAGTAATGCAACTGATCAGCTGGCTAGACCAACAAAGTTGCTAAATAACTAAGGACACTTTGCTAAAATGCAGTGGTGCTGAACAAAGCAATGGAAGCTTGTTTCAAGTCGTTCACCATGGGTGGTCTTCGGAGATCTCTGGACATTAAATTCAGGGTCCTCGCCGGCTTTTTGACCTGCAGAACAGTGAGTTGTTCCAGATCACCTATAAAATGCCAACTCTCCAAGCATCAGCCGGTGACGAGGGGGAAAGCAACACTGTTGCGATCATGTCCGTCTGCATATTTCATTCGCCATAGAGGAACTGAGGCATCCCTCTCCAGTGTGGCTCCTGCTTTTGTTATGATGAAATTTGACAAAGATGGAAATGTAACCACATTTGagaagaagaagatggagCTGTATCATGAGCTGAGTCTGCAGGCCAGAGACCTCAGGTTCCAACACCTCACCAGCATCACCGCTAggaacaacaacatcatcattcGCATGGAGGCCTTGAAGGCAGTAGTGACCCCCAATAGCCTGTTGGTGTTGGATTTCCGAGGTCTGGGATTGGAGAGATGGCTGGTCCTGGAGTTGGCTCCACAGTTGAATGGGGATCATGGAGCTCTGGCCACTCATTCACTGCCATTTGAGTTCAGAGCCCTTGAAGCTATTCTGCAGCACAGGGTAAACACCCTTCAGGCTCGACTGAATGAGGTTCACCCTGTCATCCTGGACATTCTAGAGTCACTTGTGGATCCTAAACTACTCTCTGCAGATCGCAGCAAACTGCATATACTTCTTCAGAACAGCAAGAACCTGTCAGAGCTGGAGACAGACATCAAGGTCTTCAAGGACAGTCTGCTGAAGATCCTAGACGAAGAGGAGATGATCGAGGAGCTTTGTGTCACCAAATGGACGGATCCACGTGTGTTTGAGGAGAGCAGTCTGGGCATTGATCATGCTGAGGAGATGGAGCTTCTCCTGGAGAACTACTTCATGCAGGCAGAGGAGCTGGGCAACACGACCAGGGAGCTCAAGGGCCTGATAGACGACTCCGAGAGTGTTATCTTCATCAACCTGGACAGGACCCCAAGGTGTTCTGGCTGGTGACAGGCTTCATGTTCCTGGGTAGTGGACTAATCTGGAGGAGACTGCTCTCGTTCCTGGGTCGACACCTTGAGCCTACCGTCCCCCCACAGATCCCAACAGTTTGGAAGAGAAACCAAATCAACTCAAAAGAAGGAGAGGTGAAGAGTGGACTGAGATGATACTTCCTTGTTGCACCACCTCTCTGCTGAGGAATCTGAACTGTTTGACTGTTTTCATACTACAGGGAGATTTTCCACTCGTTTATTGCAgaggaatgttttttttctcttcataATCTCAATATCAGTTTTTTTTGCAATTGGTTTAAGACTGTTGTAAGCAGTGTTAATGTATTTATTAACATCCTGGATATATTGTTATGATGAAGAACACTGTATACCTCCATCTGTATTCAAGGATACTGCACCAATTCTTACTGTCCAAAAACATGGTCCCACTGTTCACCAAAACCACTGTTCAAATAGTTTTGACTGACTATACAGCTAATAAATAAAGACATTGAGTACTGA
>XM_036937482.1
GAGCCAGCTGTCCCTGTGTTTAGGAGGAATAACGTATCTTGGATTTAGCAATACCAGATGCAagcctattgttattttactcaCATATGGCACTTTTTTGCGACAGGTTGAGAAGTTCGTTCGGGAAGCACGAGCTAGTCTCCTGCTAGCGGCATAGAAGTTTGTTCGCTAACGTTAGCAGTTAGCTAACTTACTAGCTAGCGCCTTGTTTGCGTGCTAACTAGCTAaataaaggggatacctagttagtTTTACAACTgcatgcattcaactgaaatgtgtcttctgaatttaacccaacccctctgaatcaaagaggggctgccttaatcgacatctacgtcttcggcgcccgggaaacagtgggttaactgccttgctcagggtcagaacgacagctttttgtcagctcggggatttgatccagcattTTACCCGACTTTGGACTGAAACGGTTGTATGATTTTGCAGAACAGTGCTGATAAGTTTACTAGCTACCTAGCCTACGTTAGTGATTCTGTTCCGGATGCAAGTGGAATAACCAGTAATGCAACTGATCAGCTGGCTAGACCAACAAAGTTGCTAAATAACTAAGGACACTTTGCTAAAATGCAGTGGTGCTGAACAAAGCAATGGAAGCTTGTTTCAAGTCGTTCACCATGGGTGGTCTTCGGAGATCTCTGGACATTAAATTCAGGGTCCTCGCCGGCTTTTTGACCTGCAGAACAGTGAGTTGTTCCAGATCACCTATAAAATGCCAACTCTCCAAGCATCAGCCGGTGACGAGGGGGAAAGCAACACTGTTGCGATCATGTCCGTCTGCATATTTCATTCGCCATAGAGGAACTGAGGCATCCCTCTCCAGTGTGGCTCCTGCTTTTGTTATGATGAAATTTGACAAAGATGGAAATGTAACCACATTTGagaagaagaagatggagCTGTATCATGAGCTGAGTCTGCAGGCCAGAGACCTCAGGTTCCAACACCTCACCAGCATCACCGCTAggaacaacaacatcatcattcGCATGGAGGCCTTGAAGGCAGTAGTGACCCCCAATAGCCTGTTGGTGTTGGATTTCCGAGGTCTGGGATTGGAGAGATGGCTGGTCCTGGAGTTGGCTCCACAGTTGAATGGGGATCATGGAGCTCTGGCCACTCATTCACTGCCATTTGAGTTCAGAGCCCTTGAAGCTATTCTGCAGCACAGGGTAAACACCCTTCAGGCTCGACTGAATGAGGTTCACCCTGTCATCCTGGACATTCTAGAGTCACTTGTGGATCCTAAACTACTCTCTGCAGATCGCAGCAAACTGCATATACTTCTTCAGAACAGCAAGAACCTGTCAGAGCTGGAGACAGACATCAAGGTCTTCAAGGACAGTCTGCTGAAGATCCTAGACGAAGAGGAGATGATCGAGGAGCTTTGTGTCACCAAATGGACGGATCCACGTGTGTTTGAGGAGAGCAGTCTGGGCATTGATCATGCTGAGGAGATGGAGCTTCTCCTGGAGAACTACTTCATGCAGGCAGAGGAGCTGGGCAACACGACCAGGGAGCTCAAGGGCCTGATAGACGACTCCGAGAGTGTTATCTTCATCAACCTGGACAGTCACCGGAACGTGATGATGCGTCTGAACCTGCAGCTCACCATGGGGACCTTCTCACTCTCCCTATTTGGCCTGATGGGCGTCGCCTTCGGGATGAACTTGGAATCCACGTTTGAGGAGGACCCCAAGGTGTTCTGGCTGGTGACAGGCTTCATGTTCCTGGGTAGTGGACTAATCTGGAGGAGACTGCTCTCGTTCCTGGGTCGACACCTTGAGCCTACCGTCCCCCCACAGATCCCAACAGTTTGGAAGAGAAACCAAATCAACTCAAAAGAAGGAGAGGTGAAGAGTGGACTGAGATGATACTTCCTTGTTGCACCACCTCTCTGCTGAGGAATCTGAACTGTTTGACTGTTTTCATACTACAGGGAGATTTTCCACTCGTTTATTGCAgaggaatgttttttttctcttcataATCTCAATATCAGTTTTTTTTGCAATTGGTTTAAGACTGTTGTAAGCAGTGTTAATGTATTTATTAACATCCTGGATATATTGTTATGATGAAGAACACTGTATACCTCCATCTGTATTCAAGGATACTGCACCAATTCTTACTGTCCAAAAACATGGTCCCACTGTTCACCAAAACCACTGTTCAAATAGTTTTGACTGACTATACAGCTAATAAATAAAGACATTGAGTACTGA
>TU127979
CTGCGTCGCCAGTTATGCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATCCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATCCATCTCTGGTATAGTGTAATAGTCATGCTACGTCACCAGTTATGCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATCCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATCCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATCCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATCCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATGCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATCCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATGCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATGCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCGCCAGTTATGCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCACCAGTTATGCATCTCTGGTATAGTGTAATAGTCATGCTGCTTCACCAGTTATGCATCTCTGGTATAGTGTAATAGTCATGCTGCGTCCATACAAAATATGCTGGCAGAATTATCTAGCTAGACAAAAATAAATCAGTTTTAAGTGTATTGCTGATTTAACTGGCTTTTGGTAGACTTCATTTGTCCTGATGTTGTTTTCTGTTCTAAGCTGCGTTTAATGCTATCAGGAGAACTAGCCTGTTTTTCCAACTGCTGAACATGGCATTTTCCTTTTCTCCTGTTGTTAATTGGCTTAACCAGCTCTCTGTTAGTCATGCATAGTTTGTCACCATCCCATTTCCGTCTGTCCCCATGGGCCATGGCCCACCCAGTCACCGGAACGTGATGATGCGTCTGAACCTGCAGCTCACCATGGGGACCTTCTCACTCTCCCTATTTGGCCTGATGGGCGTCGCCTTCGGGATGAACTTGGAATCCACGTTTGAGGAGGTTAATGATATGTGTTGATGATAAAGCTTTAATCTTAGAAATTACACGTGAGACACTTTAACAATGAGTTTGTTAACCTGGCAACACATGCTCATTGTAAACTAGCCAGCTGCAGCAATGTAATATTGCTAAATGGCAGATGAACCTGAGGTGAAGGATGACTGGCTCAGTGTGTGGTCCATAGAGATATAACGCTAGATCGAACAGAGTTTTATCTATGGTGTCGTGTTTGTTCCCCCAGGACCCCAAGGTGTTCTGGCTGGTGACAGGCTTCATGTTCCTGGGTAGTGGACTAATCTGGAGGAGACTGCTCTCGTTCCTGGGTCGACACCTTGAGCCTACCGTCCCCCCACAGATCCCAACAGTTTGGAAGAGAAACCAAATCAACTCAAAAGAAGGAGAGGTGAAGAGTGGACTGAGATGATACTTCCTTGTTGCACCACCTCTCTGCTGAGGAATCTGAACTGTTTGACTGTTTTCATACTACAGGGAGATTTTCCACTCGTTTATTGCAgaggaatgttttttttctcttcataATCTCAATATCAGTTTTTTTTGCAATTGGTTTAAGACTGTTGTAAGCAGTGTTAATGTATTTATTAACATCCTGGATATATTGTTATGATGAAGAACACTGTATACCTCCATCTGTATTCAAGGATACTGCACCAATTCTTACTGTCCAAAAACATGGTCCCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034956.1 False 2154 mRNA 0.46 10 10007058 10014363
XM_036937482.1 False 2267 mRNA 0.47 11 10007063 10014363
TU127979 True 1772 lncRNA 0.44 2 10012332 10014291

Neighbor

gene id symbol gene type direction distance location
LOC110507293 LOC106606028 coding upstream 23756 9847951 ~ 9983302 (+)
LOC110520749 LOC106606080 coding upstream 161439 9821130 ~ 9845619 (+)
LOC110520735 LOC106573422 coding upstream 221885 9758328 ~ 9785173 (+)
LOC118937659 NA coding upstream 230251 9773574 ~ 9776807 (+)
LOC110520736 LOC106605972 coding upstream 249157 9744866 ~ 9757901 (+)
LOC110507380 LOC106573899 coding downstream 6223 10020205 ~ 10035867 (+)
LOC110520763 pgcp coding downstream 21901 10036264 ~ 10074921 (+)
LOC110507402 LOC106595324 coding downstream 108082 10122445 ~ 10150796 (+)
LOC110520765 NA coding downstream 158201 10172564 ~ 10184239 (+)
LOC110507434 LOC106584755 coding downstream 171742 10186105 ~ 10189115 (+)
G112171 NA non-coding upstream 10980 9995755 ~ 9996078 (+)
G112169 NA non-coding upstream 14888 9991850 ~ 9992170 (+)
G112168 LOC100194703 non-coding upstream 15284 9991338 ~ 9991774 (+)
G112165 NA non-coding upstream 18705 9987313 ~ 9988353 (+)
G112163 NA non-coding upstream 21585 9984898 ~ 9985473 (+)
G112133 NA non-coding downstream 476 10014839 ~ 10015927 (+)
G112179 NA non-coding downstream 7893 10022256 ~ 10022505 (+)
G112180 NA non-coding downstream 13672 10028035 ~ 10029544 (+)
G112200 NA non-coding downstream 71621 10085984 ~ 10090231 (+)
LOC110506952 LOC106606100 other upstream 283187 9701990 ~ 9742723 (+)
G111788 NA other upstream 563017 9440309 ~ 9444041 (+)
G111453 NA other upstream 675442 9330269 ~ 9331616 (+)
LOC110535224 aif1 other upstream 778033 9221418 ~ 9229025 (+)
G112697 NA other downstream 797155 10811518 ~ 10826063 (+)
fbxo32 fbxo32 other downstream 1226369 11227497 ~ 11243074 (+)
elovl4a LOC106606161 other downstream 1247191 11260912 ~ 11275480 (+)
G113285 NA other downstream 1400568 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 1463613 11477976 ~ 11482741 (+)

Expression


Co-expression Network