LOC110507380 (LOC106573899)


Basic Information

Item Value
gene id LOC110507380
gene name LOC106573899
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10020205 ~ 10035867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937498.1
TCGGCATACTCTACTAGCCTATCATAACTCATTCACTTGTGGCTATGTCAAATGGTCAATTTAAATTATCACTGCACACTCAAGTGAATGACGCTTCTTTATGTTCCAAGTATCTATCAACCAATTATAGAAGACTCTTTCCTAACTACCTTGTTTCCGCAATGAATGTTGCGTTCCAAGCTGGCGCATCCGTACATGTAATAGCGCGTGCTTCCGCTTTTCCCTTTCAGTAGAAAAGTACTAGGAAAACGGGAAATAAACTATTTTATTCGGAGAGAAACATCGAGTGGGGAGGATCTAGTTTTGCTCGTTTTGGAATAATTCgattgggagagagagtggtgtctACAACTGTGAAGATAATTACATATGTTTTGTATGAGCGCTAGCCAATAGATCTATTTTTCGCCACGGTTTGTTCTTTCCAAAGGAATAATGACGAACACTTGGATACTATTGACTCTCGCGGTGGCGACCTGTTTTATGAGTGAAACGATATTGATTTCGGCCCAGTCGGATTACCTGTACCTGGATGACCAATCAGGAGACTCCGTAGACGACGACGGTTACAACTCTGGCTCCGGGTCCGGTGATATGATTATCGGTGAGGCCACTGAGCCAGTCAAAGTGAAAAGGGTGTTCGTCGCTCCTGAAGCAGAGCCAACCCAGGACTCTCTACCAGCCCTTTCAACCACAATGGAGATGTTGACATTCACTGACCTGAGCACAGAAATAGCTGAGATGGAACCGGAGACCAAAACAGAGGTCCCTGAGCAGTCTCTGGACGTGACAGAGGAGACTGTTATCAGTAGTGAAGCTCCTCCCAGCACCACTGGTGCTTCCGGGTTGCTGTACGAGGCAGACGCACCCTACGATGTACACTCTGAAAACCTATTCCAGAGGACGGAGGTGCTAGCAGCGGTGATAGCTGGCGGGGTTATAGGTTTGCTATTCGccatcttcctcatcctcctcctggtCTACAGGatgaggaagaaggatgaggggAGCTACGTCCTCGGAGAACGCAAGGCCCCTAGCTCAGCCTATCAGAAAGCCCCCACCAAGGAGTTCTACGCCTGAAACACAACCATCGTCACTATGAGGAGAAACCTCTGGAGCAACATAAAGAcgaaggctgtgtcccaaatggcaccctatgccctctATAGTGTACTTACTACTTTTAACCAGTATCTGTGCACcatatagggtgtcatttgggatgcatacaaaACATCTCATACAGCAGGGTCCTCCTCGCATGCTGTTGGTTGAAATGGTATTGAATGAGGAAGTGTTTCAAGGAGCTTTTTCATATAGCAAATATATACTTTTCCTTAATGAGGCCAAACAGGGCTATTGTAAATGTTTCATATTGTGGATCATTAGAACGGTTGGAGAATTTCCTTGTCATGTGAGAACGTGAAACATATTCATAGATGGTCATGGACTACTTTCTAACTGTAGAGGTACATATTTGTAAGGAAGGaaaaacaacttttttttaaaaaggtcACTGAAATAAAAATGACAGAATATAATTGTCCTATAGCTATTCTATTTTTGATTTTTTTCATAGCATGTCCAAAGCTGTTTTTCATTAACTTATGTTTTTCATGTCGAGGTGATGTAATGTTTCTAGTCTCAAAGCAATCTGGTCTCCAATTTAACTTGGATGAAAACATtttgttttgctttgttattatggtatTTTTCTTGTCATTGTGTGAAATGAATTACAGGATTCCATAACTACCCAGTGTCATCTCACCAAAGCAAAGGACATTCCCTTCTAGTAAAACATTACTGATATAAAGCAGTGTTTACCAACTCCAGTCCCCAACAGTACCCATTTTTTGTTGTAGTCCCTgacaaactcacctgattcaatTTTAGGGCCTGAGTAGTTGACAAattgaatcaggtgagtttgtTTGGGGCTACAACAACGTGTACTGTTGGAGGTACTCGAGGCCTGGAGTTAAGAAACACTGATTTAAATGGTACTCTTAATGGCAGGGGTGTAAAACTCATTTCACGGCGGGCCTAGTGTctgggtttttgttttttcttcttaagacctagacaacctggtgaggTGTTTACTAATTAGGGACcttaatcaatcaagtacaaggaagGAGTGAACCCtcagacactcagccctccgtggaatgagtttgacacgtgctttGAGGaatgcacaggaggttggtggcaccttaattaagGAGACCGGCTCATGGTaatgtatcaaacacatggtttccaggtgtttgatgccattccatttactccgttctGGCCATtcttatgagccgttctccctcagcagcctccactgctataTGTACTCTGTGTTCCAGTTTCTGTTACCCAAAATATAGAGTAACCTTTTCAGTAGGTTTCACTATTAGGTCCATGAATTTTCTCCTCTGATCACAATGGTATTTTAAGACTTGGGTGTTTTTATAAACAAACCTGCAAAACTTTTCTGACTGATTTATGATATAAAAGCTGATTTTCATTTATCTGCAGCTTTTAATTGATGACTTGCAAGATATGGGGAACTAATGCTAATGAACAGTCCTATGCGCTCAACTCTGTTCAGTTGACTTTGTGTTGACTTTAGTACAGTGATTTACTCTAGCCACAGATGGGACACCGGACGTCTCTGTAATATCCGTTTCAACTTTGACTGAAAATCTGTCATTCGAAAGTCCAGGGcactatcccaaatggcaccctagagCCATATGAAcactggtcaaaagcagtgcactaaatagggactagggtgctatTTGTGATGTAGTCCCAGTGAACAGGACATGGTGTACCTTTTACTTATCTGTTCCCCCTCTAGCATCTGTAAAGAATTATGAATGTCTACAATAGAACAGACGGTTCCTCTTCCCTAAAAAATAATAACTTCTATGATCACTGGGCTGATGTTTTTCTCGTGGTACGTAATTATTGAATAAAGGTACTTACAGTAAGACTTTCCTTGGACTTGGAACAGTGTTTTTGCCATTTATCACATGTAACACAATGTCCCCATTTATTTAGTTGCCTTTTAGTCCTGACTATTCTAAAGGTATAGTCAGCGAAATGATGTAGATGCataaagtaaaactgcataatGGGTCAATTTCCACAACTAAGAGCGTTAGAGCGCGAGGCTAAACTTCTCCGCTGTTTTGGTCCAGTGGCTGCCATATTGTAAGAGCGGGCTGTGACGGAAACCCGTGTGCAAATACTGTATGTGTGACAGAGTGAAATCTTGCTCATTGAAATATCTGCAGCGCTGCTTGTGCAACACAATTTCGCTGACTACCTTTAGGTCAGTGGTGCATCTGTATAATGTCTGTACTATAATTTATATATTAATTTATATTACATATTTGAAATATGTTAGTTCAAGTATATTCACAAATGTTTTAAGCCTTTGAAGTGCCTACCATTCTGAAAGTCTAAtttcttttttttactgtttGGGACAAAAGATGTCTTCTCAGTGGCATGAAGTAGTAGTCACGAATATAAGCACAGGATACTGATGGCAACTTAGTGTTACAAAAGCAGTGTTGTATGTTATGATGGGAGACACTATTGAATAAACAATGTGGCTTAATATTA
>XM_036937490.1
TACTAGCCTATCATAACTCATTCACTTGTGGCTATGTCAAATGGTCAATTTAAATTATCACTGCACACTCAAGTGAATGACGCTTCTTTATGTTCCAAGTATCTATCAACCAATTATAGAAGACTCTTTCCTAACTACCTTGTTTCCGCAATGAATGTTGCGTTCCAAGCTGGCGCATCCGTACATGTAATAGCGCGTGCTTCCGCTTTTCCCTTTCAGTAGAAAAGTACTAGGAAAACGGGAAATAAACTATTTTATTCGGAGAGAAACATCGAGTGGGGAGGATCTAGTTTTGCTCGTTTTGGAATAATTCgattgggagagagagtggtgtctACAACTGTGAAGATAATTACATATGTTTTGTATGAGCGCTAGCCAATAGATCTATTTTTCGCCACGGTTTGTTCTTTCCAAAGGAATAATGACGAACACTTGGATACTATTGACTCTCGCGGTGGCGACCTGTTTTATGAGTGAAACGATATTGATTTCGGCCCAGTCGGATTACCTGTACCTGGATGACCAATCAGGAGACTCCGTAGACGACGACGGTTACAACTCTGGCTCCGGGTCCGGTGATATGATTATCGGTGAGGCCACTGAGCCAGTCAAAGTGAAAAGGGTGTTCGTCGCTCCTGAAGCAGAGCCAACCCAGGACTCTCTACCAGCCCTTTCAACCACAATGGAGATGTTGACATTCACTGACCTGAGCACAGAAATAGCTGAGATGGAACCGGAGACCAAAACAGAGaccCAGGTCCCTGAGCAGTCTCTGGACGTGACAGAGGAGACTGTTATCAGTAGTGAAGCTCCTCCCAGCACCACTGGTGCTTCCGGGTTGCTGTACGAGGCAGACGCACCCTACGATGTACACTCTGAAAACCTATTCCAGAGGACGGAGGTGCTAGCAGCGGTGATAGCTGGCGGGGTTATAGGTTTGCTATTCGccatcttcctcatcctcctcctggtCTACAGGatgaggaagaaggatgaggggAGCTACGTCCTCGGAGAACGCAAGGCCCCTAGCTCAGCCTATCAGAAAGCCCCCACCAAGGAGTTCTACGCCTGAAACACAACCATCGTCACTATGAGGAGAAACCTCTGGAGCAACATAAAGAcgaaggctgtgtcccaaatggcaccctatgccctctATAGTGTACTTACTACTTTTAACCAGTATCTGTGCACcatatagggtgtcatttgggatgcatacaaaACATCTCATACAGCAGGGTCCTCCTCGCATGCTGTTGGTTGAAATGGTATTGAATGAGGAAGTGTTTCAAGGAGCTTTTTCATATAGCAAATATATACTTTTCCTTAATGAGGCCAAACAGGGCTATTGTAAATGTTTCATATTGTGGATCATTAGAACGGTTGGAGAATTTCCTTGTCATGTGAGAACGTGAAACATATTCATAGATGGTCATGGACTACTTTCTAACTGTAGAGGTACATATTTGTAAGGAAGGaaaaacaacttttttttaaaaaggtcACTGAAATAAAAATGACAGAATATAATTGTCCTATAGCTATTCTATTTTTGATTTTTTTCATAGCATGTCCAAAGCTGTTTTTCATTAACTTATGTTTTTCATGTCGAGGTGATGTAATGTTTCTAGTCTCAAAGCAATCTGGTCTCCAATTTAACTTGGATGAAAACATtttgttttgctttgttattatggtatTTTTCTTGTCATTGTGTGAAATGAATTACAGGATTCCATAACTACCCAGTGTCATCTCACCAAAGCAAAGGACATTCCCTTCTAGTAAAACATTACTGATATAAAGCAGTGTTTACCAACTCCAGTCCCCAACAGTACCCATTTTTTGTTGTAGTCCCTgacaaactcacctgattcaatTTTAGGGCCTGAGTAGTTGACAAattgaatcaggtgagtttgtTTGGGGCTACAACAACGTGTACTGTTGGAGGTACTCGAGGCCTGGAGTTAAGAAACACTGATTTAAATGGTACTCTTAATGGCAGGGGTGTAAAACTCATTTCACGGCGGGCCTAGTGTctgggtttttgttttttcttcttaagacctagacaacctggtgaggTGTTTACTAATTAGGGACcttaatcaatcaagtacaaggaagGAGTGAACCCtcagacactcagccctccgtggaatgagtttgacacgtgctttGAGGaatgcacaggaggttggtggcaccttaattaagGAGACCGGCTCATGGTaatgtatcaaacacatggtttccaggtgtttgatgccattccatttactccgttctGGCCATtcttatgagccgttctccctcagcagcctccactgctataTGTACTCTGTGTTCCAGTTTCTGTTACCCAAAATATAGAGTAACCTTTTCAGTAGGTTTCACTATTAGGTCCATGAATTTTCTCCTCTGATCACAATGGTATTTTAAGACTTGGGTGTTTTTATAAACAAACCTGCAAAACTTTTCTGACTGATTTATGATATAAAAGCTGATTTTCATTTATCTGCAGCTTTTAATTGATGACTTGCAAGATATGGGGAACTAATGCTAATGAACAGTCCTATGCGCTCAACTCTGTTCAGTTGACTTTGTGTTGACTTTAGTACAGTGATTTACTCTAGCCACAGATGGGACACCGGACGTCTCTGTAATATCCGTTTCAACTTTGACTGAAAATCTGTCATTCGAAAGTCCAGGGcactatcccaaatggcaccctagagCCATATGAAcactggtcaaaagcagtgcactaaatagggactagggtgctatTTGTGATGTAGTCCCAGTGAACAGGACATGGTGTACCTTTTACTTATCTGTTCCCCCTCTAGCATCTGTAAAGAATTATGAATGTCTACAATAGAACAGACGGTTCCTCTTCCCTAAAAAATAATAACTTCTATGATCACTGGGCTGATGTTTTTCTCGTGGTACGTAATTATTGAATAAAGGTACTTACAGTAAGACTTTCCTTGGACTTGGAACAGTGTTTTTGCCATTTATCACATGTAACACAATGTCCCCATTTATTTAGTTGCCTTTTAGTCCTGACTATTCTAAAGGTATAGTCAGCGAAATGATGTAGATGCataaagtaaaactgcataatGGGTCAATTTCCACAACTAAGAGCGTTAGAGCGCGAGGCTAAACTTCTCCGCTGTTTTGGTCCAGTGGCTGCCATATTGTAAGAGCGGGCTGTGACGGAAACCCGTGTGCAAATACTGTATGTGTGACAGAGTGAAATCTTGCTCATTGAAATATCTGCAGCGCTGCTTGTGCAACACAATTTCGCTGACTACCTTTAGGTCAGTGGTGCATCTGTATAATGTCTGTACTATAATTTATATATTAATTTATATTACATATTTGAAATATGTTAGTTCAAGTATATTCACAAATGTTTTAAGCCTTTGAAGTGCCTACCATTCTGAAAGTCTAAtttcttttttttactgtttGGGACAAAAGATGTCTTCTCAGTGGCATGAAGTAGTAGTCACGAATATAAGCACAGGATACTGATGGCAACTTAGTGTTACAAAAGCAGTGTTGTATGTTATGATGGGAGACACTATTGAATAAACAATGTGGCTTAATATTA
>TU127987
ggccctccatggaatgagtttgacacccctgatctaaACATTTGAGTGGCGCCCTCTCATCTCCACTGATGTGAAAACGATAGGTTTAACCAGGGCTCCTTTCCAACcttgttcccggagagctaccctcctgtacgTTTTTATTTCAACCCCAGTTGTGACTAACCTGATTCATTTTACCAACCAGCTCGTTATTAGAATCAGTTgagctagattagggttggagcgaaaacctacaggacgatagctctccaggaacagtgttggagaGTCCTGGTTTAGACCTTTCAATGTATTGTGAGGTGTTATGCTACCCCGGAATCCTGCACTGGTGTCAAAAGTGAGATGGGGCTATCATATCCGGATAGTTCATTACCTGTGTCGGCATACTCTACTAGC
>TU127975
aatcaggtgagtttgtTTGGGGCTACAACAACGTGTACTGTTGGAGGTACTCGAGGCCTGGAGTTAAGAAACACTGATTTAAATGGTACTCTTAATGGCAGGGGTGTAAAACTCATTTCACGGCGGGCCTAGTGTctgggtttttgttttttcttcttaagacctagacaacctggtgaggTGTTTACTAATTAGGGACcttaatcaatcaagtacaaggaagGAGTGAACCCtcagacactcagccctccgtggaatgagtttgacacgtgctttGAGGaatgcacaggaggttggtggcaccttaattaagGAGACCGGCTCATGGTaatgtatcaaacacatggtttccaggtgtttgatgccattccatttactccgttctGGCCATtcttatgagccgttctccctcagcagcctccactgctataTGTACTCTGTGTTCCAGTTTCTGTTACCCAAAATATAGAGTAACCTTTTCAGTAGGTTTCACTATTAGGTCCATGAATTTTCTCCTCTGATCACAATGGTATTTTAAGACTTGGGTGTTTTTATAAACAAACCTGCAAAACTTTTCTGACTGATTTATGATATAAAAGCTGATTTTCATTTATCTGCAGCTTTTAATTGATGACTTGCAAGATATGGGGAACTAATGCTAATGAACAGTCCTATGCGCTCAACTCTGTTCAGTTGACTTTGTGTTGACTTTAGTACAGTGATTTACTCTAGCCACAGATGGGACACCGGACGTCTCTGTAATATCCGTTTCAACTTTGACTGAAAATCTGTCATTCGAAAGTCCAGGGcactatcccaaatggcaccctagagCCATATGAAcactggtcaaaagcagtgcactaaatagggactagggtgctatTTGTGATGTAGTCCCAGTGAACAGGACATGGTGTACCTTTTACTTATCTGTTCCCCCTCTAGCATCTGTAAAGAATTATGAATGTCTACAATAGAACAGACGGTTCCTCTTCCCTAAAAAATAATAACTTCTATGATCACTGGGCTGATGTTTTTCTCGTGGTACGTAATTATTGAATAAAGGTACTTACAGTAAGACTTTCCTTGGACTTGGAACAGTGTTTTTGCCATTTATCACATGTAACACAATGTCCCCATTTATTTAGTTGCCTTTTAGTCCTGACTATTCTAAAGGTATAGTCAGCGAAATGATGTAGATGCataaagtaaaactgcataatGGGTCAATTTCCACAACTAAGAGCGTTAGAGCGCGAGGCTAAACTTCTCCGCTGTTTTGGTCCAGTGGCTGCCATATTGTAAGAGCGGGCTGTGACGGAAACCCGTGTGCAAATACTGTATGTGTGACAGAGTGAAATCTTGCTCATTGAAATATCTGCAGCGCTGCTTGTGCAACACAATTTCGCTGACTACCTTTAGGTCAGTGGTGCATCTGTATAATGTCTGTACTATAATTTATATATTAATTTATATTACATATTTGAAATATGTTAGTTCAAGTATATTCACAAATGTTTTAAGCCTTTGAAGTGCCTACCATTCTGAAAGTCTAAtttcttttttttactgtttGGGACAAAAGATGTCTTCTCAGTGGCATGAAGTAGTAGTCACGAATATAAGCACAGGATACTGATGGCAACTTAGTGTTACAAAAGCAGTGTTGTATGTTATGATGGGAGACACTATTGAATAAACAATGTGGC

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0048565 digestive tract development biological_process
GO:0060973 cell migration involved in heart development biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0031012 extracellular matrix cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937498.1 False 3642 mRNA 0.41 5 10020586 10035867
XM_036937490.1 False 3637 mRNA 0.41 5 10020597 10035867
TU127987 False 399 lncRNA 0.39 1 10020205 10020603
TU127975 True 1712 lncRNA 0.40 1 10034147 10035858

Neighbor

gene id symbol gene type direction distance location
LOC110493963 LOC106606027 coding upstream 6223 10007058 ~ 10014363 (+)
LOC110507293 LOC106606028 coding upstream 37284 9847951 ~ 9983302 (+)
LOC110520749 LOC106606080 coding upstream 174967 9821130 ~ 9845619 (+)
LOC110520735 LOC106573422 coding upstream 235413 9758328 ~ 9785173 (+)
LOC118937659 NA coding upstream 243779 9773574 ~ 9776807 (+)
LOC110520763 pgcp coding downstream 397 10036264 ~ 10074921 (+)
LOC110507402 LOC106595324 coding downstream 86578 10122445 ~ 10150796 (+)
LOC110520765 NA coding downstream 136697 10172564 ~ 10184239 (+)
LOC110507434 LOC106584755 coding downstream 150238 10186105 ~ 10189115 (+)
LOC118937668 LOC106584755 coding downstream 181402 10217269 ~ 10219572 (+)
G112133 NA non-coding upstream 4659 10014839 ~ 10015927 (+)
G112171 NA non-coding upstream 24508 9995755 ~ 9996078 (+)
G112169 NA non-coding upstream 28416 9991850 ~ 9992170 (+)
G112168 LOC100194703 non-coding upstream 28812 9991338 ~ 9991774 (+)
G112200 NA non-coding downstream 50117 10085984 ~ 10090231 (+)
G112241 LOC106584755 non-coding downstream 147684 10183551 ~ 10296699 (+)
G112273 NA non-coding downstream 222985 10258852 ~ 10301455 (+)
G112556 NA non-coding downstream 293683 10329550 ~ 10329961 (+)
G112566 NA non-coding downstream 310829 10346696 ~ 10346984 (+)
LOC110506952 LOC106606100 other upstream 296715 9701990 ~ 9742723 (+)
G111788 NA other upstream 576545 9440309 ~ 9444041 (+)
G111453 NA other upstream 688970 9330269 ~ 9331616 (+)
LOC110535224 aif1 other upstream 791561 9221418 ~ 9229025 (+)
G112697 NA other downstream 775651 10811518 ~ 10826063 (+)
fbxo32 fbxo32 other downstream 1204865 11227497 ~ 11243074 (+)
elovl4a LOC106606161 other downstream 1225687 11260912 ~ 11275480 (+)
G113285 NA other downstream 1379064 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 1442109 11477976 ~ 11482741 (+)

Expression

LOC110507380(LOC106573899) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110507380(LOC106573899) Expression in each Bioproject

Bar chart with 21 bars.
LOC110507380(LOC106573899) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network