LOC110517641 (LOC106584755)


Basic Information

Item Value
gene id LOC110517641
gene name LOC106584755
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10235740 ~ 10238379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937520.1
GCTCCTTCCATCTAGAGCTGATGGAATGTTCAGCAGGTATAAATGCAGTTCTTAGAGGAAGCAGTAGACTAGAAGGAcctggcagagacagagagacaagaagCTTTCACAGGTTTTCACACACATCTCAAGATAGCACTGAAACACTGACCTGACAGAATGTTCTTAATCCTGGTTGTCACAATGTTCTTGGCTGGCTGCTTGGCTTTGCCCATCAAAGATCCCTACTCGTATTCCTCTGCGGTGGGTCAGGGAGGTGGCACCCCATTTGCTTCCTACGGTGAGGGGCGCATCACGGGAGTCAGAGTGTGGGAGaccaacaactactactactactactactactactactactacaactacaacagCAACAACTACATCAGCGGGTTCCAGCTGAAATACGGCAACACCTGGTCTCCTGTGTTCGGTAACGAAGGGAGTGAAAAGCAGGAGATGGAGCTGTTTAATGATGAGGCCATCGTTGAGGTGTCTGGGAAGTACAACCCAGCAGACTACATCTGCTACCTGGTGTTAACCACCAACATGGGGCGCACTCTGTCAGCCGGCCTGCCCAACCAGGTCTCCTTCAACTTCTACCCATCCAACATGGGCAATGAGCTGAGGATCCTCAGCGGTCGCTTCAACGGTGCTGGAATCACCTCCATCGGAGCCCACTGGGGATTTGTGGACATGGAAGGGGCTGGAAACAGTACTCTGGGAACAGCACTGGAAACAGTAACTCCTATTTATTAGGGGAAAAAAGTATGTCTTGCTCTTTGGGATGGTATCCCAGATACAGATTAAGCCTAATCCTGGACTAGTtactttcaatggagattctccattcaacatgctttttagtccaggagtaAACTTAATCTGGGTCCAGGAAACTGGCCTTATATGATGGACGGATGTTTGACAGACGCTGACAGAACAGTTTTTATTTCACTATCTGTTTGTTATTTCACTTTAATTTCACTGATTGAATTGGAATGTTTTGAGTACTTTGGAAGTACTTTTGAGGTGATTCCTCACTTGAAGCAGTAATAAAATATTTCTTAACATTCAAATTCATTCAGTTCAAATTCTCATGAAGCATCCATTAGATAGGAATATTCAAACAGTCCTGTCAGCTTGGGTCAACATGCGTTGTTATCACATTTTATCACAATAAAGGAAAGATTCATATGGGATATAAAGGATTAATTATATCTTTGATTAATTGAACAATCAAATATTATGGGGAGATAATAGTGTTTCAGGGTGTTTCACCTTCACTATTTTATACACTCTGCTTTTGTTATTTGTTGATCCTTTTCTGCTACATCTGCTTCTGGACATTTTAATAAAAAGCATATCTTTAATCA
>XM_036937526.1
GCTCCTTCCATCTAGAGCTGATGGAATGTTCAGCAGGTATAAATGCAGTTCTTAGAGGAAGCAGTAGACTAGAAGGAcctggcagagacagagagacaagaagCTTTCACAGGTTTTCACACACATCTCAAGATAGCACTGAAACACTGACCTGACAGAATGTTCTTAATCCTGGTTGTCACAATGTTCTTGGCTGGCTGCTTGGCTTTGCCCATCAAAGATCCCTACTCGTATTCCTCTGCGGTGGGTCAGGGAGGTGGCACCCCATTTGCTTCCTACGGTGAGGGGCGCATCACGGGAGTCAGAGTGTGGGAGaccaacaactactactactactactactactactactactacaactacaacagCAACAACTACATCAGCGGGTTCCAGCTGAAATACGGCAACACCTGGTCTCCTGTGTTCGGTAACGAAGGGAGTGAAAAGCAGGAGATGGAGCTGTTTAATGATGAGGCCATCGTTGAGGTGTCTGGGAAGTACAACCCAGCAGACTACATCTGCTACCTGGTGTTAACCACCAACATGGGGCGCACTCTGTCAGCCGGCCTGCCCAACCAGGTCTCCTTCAACTTCTACCCATCCAACATGGGCAATGAGCTGAGGATCCTCAGCGGTCGCTTCAACGGTGCTGGAATCACCTCCATCGGAGCCCACTGGGGATTTGTGGACATGGAAGGGGCTGGAAACAGTACTCTGGGAACAGCACTGGAAACAGTAACTCCTATTTATTAGGGGAAAAAatgctttttagtccaggagtaAACTTAATCTGGGTCCAGGAAACTGGCCTTATATGATGGACGGATGTTTGACAGACGCTGACAGAACAGTTTTTATTTCACTATCTGTTTGTTATTTCACTTTAATTTCACTGATTGAATTGGAATGTTTTGAGTACTTTGGAAGTACTTTTGAGGTGATTCCTCACTTGAAGCAGTAATAAAATATTTCTTAACATTCAAATTCATTCAGTTCAAATTCTCATGAAGCATCCATTAGATAGGAATATTCAAACAGTCCTGTCAGCTTGGGTCAACATGCGTTGTTATCACATTTTATCACAATAAAGGAAAGATTCATATGGGATATAAAGGATTAATTATATCTTTGATTAATTGAACAATCAAATATTATGGGGAGATAATAGTGTTTCAGGGTGTTTCACCTTCACTATTTTATACACTCTGCTTTTGTTATTTGTTGATCCTTTTCTGCTACATCTGCTTCTGGACATTTTAATAAAAAGCATATCTTTAATCA

Function

NR:

description
zymogen granule membrane protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937520.1 False 1370 mRNA 0.43 5 10235740 10238379
XM_036937526.1 True 1281 mRNA 0.43 6 10235740 10238379

Neighbor

gene id symbol gene type direction distance location
LOC118937668 LOC106584755 coding upstream 16168 10217269 ~ 10219572 (+)
LOC110507434 LOC106584755 coding upstream 46625 10186105 ~ 10189115 (+)
LOC110520765 NA coding upstream 51501 10172564 ~ 10184239 (+)
LOC110507402 LOC106595324 coding upstream 84944 10122445 ~ 10150796 (+)
LOC110520763 pgcp coding upstream 160819 10036264 ~ 10074921 (+)
LOC110507415 LOC106584755 coding downstream 55420 10293799 ~ 10296592 (+)
LOC110535244 ctnnb1 coding downstream 127753 10366101 ~ 10402645 (+)
LOC110507508 LOC106605488 coding downstream 388207 10626586 ~ 10710360 (+)
washc5 kiaa0196 coding downstream 793613 11031992 ~ 11083098 (+)
nsmce2 LOC106606151 coding downstream 845982 11084361 ~ 11097464 (+)
G112200 NA non-coding upstream 145509 10085984 ~ 10090231 (+)
LOC110507380 LOC106573899 non-coding upstream 199882 10020205 ~ 10035867 (+)
G112180 NA non-coding upstream 206196 10028035 ~ 10029544 (+)
G112179 NA non-coding upstream 213235 10022256 ~ 10022505 (+)
G112133 NA non-coding upstream 219813 10014839 ~ 10015927 (+)
G112273 NA non-coding downstream 20473 10258852 ~ 10301455 (+)
G112556 NA non-coding downstream 91171 10329550 ~ 10329961 (+)
G112566 NA non-coding downstream 108317 10346696 ~ 10346984 (+)
G112585 NA non-coding downstream 127014 10365393 ~ 10365667 (+)
LOC118937659 NA other upstream 459289 9773574 ~ 9776807 (+)
LOC110506952 LOC106606100 other upstream 511869 9701990 ~ 9742723 (+)
G111788 NA other upstream 791699 9440309 ~ 9444041 (+)
G111453 NA other upstream 904124 9330269 ~ 9331616 (+)
LOC110535224 aif1 other upstream 1006715 9221418 ~ 9229025 (+)
G112697 NA other downstream 573139 10811518 ~ 10826063 (+)
fbxo32 fbxo32 other downstream 1002353 11227497 ~ 11243074 (+)
elovl4a LOC106606161 other downstream 1023175 11260912 ~ 11275480 (+)
G113285 NA other downstream 1176552 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 1239597 11477976 ~ 11482741 (+)

Expression


Co-expression Network