LOC110507415 (LOC106584755)


Basic Information

Item Value
gene id LOC110507415
gene name LOC106584755
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10293799 ~ 10296592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937539.1
ACTGATGGAATGTTCAGCAGGTATAAATGCAGTTCTTAGAGGAAGCAGTAGACTAGAAGGAcctggcagagacagagagacaagaagCTTTCACAGGTTTTCACACACATCTCAAGATAGCACTGAAACactgacctgacagAATGTTCTTAATCCTGGTTGTCACAATGTCCTTGGCTGGCTGCTTGGCAATGCCCATCAAAGACCCCTACTCGTATTCCTCTGCGGTGGGTCAGGGAGGTGGCACCCCATTTGCTTCCTACGGTGAGGGGCGCATTACGGGAGTCAGAGTGTGGGagaacaacaactactactactactactacaacaacaacgcCTACATCAGTGGGTTCCAGCTGAGATACGGCAACACCTGGTCTCCTGTGTTCGGTAACGAAGTGGGTGAAAAGCAGGAGATGGATCTGTTTAATGATGAGGCCATCGTTGAGGTGTCTGGGAAGTACAACCCAGCAGACTACATCTGCTACCTGGTGTTAACCACCAACATGGGGCGCACTCTGTCAGCCGGCATGCCCAACCAAGTCTCCTTCAACTTCTACCCATCCAACATGGGCAATGAGCTGAGGATCCTCAGCGGTCGCTTCAACGGTGCTGGAATCACCTCCATCGGAGCCCACTGGGGATTTGTGGACATGGAAGGGGCTGGAAACAGTACTCTGGGAACAGCACTGGAAACAGTAACTCCTATTTATTAGGGGGAAAAAGTATGTCTTGCTCTTTGGGATGGTATCCCAgatacagattaagcctagtcctggactagttactttcaatggagattctccattcaacatgctttttagtccaggagtaAACTTAATCTGGGTCCAGGAAACTGGCCTTATATGTTGGACGGATGTTTGACATAGACGCTGACAGAACTGTTTTTTTATATCACTATCTGATGGGGGCttcatgtgtcacgccctgaccttagatcagggtgtgatttgggtggtcattctatgttctttatttctatgttttgggtttctatgttttggttctcaatcagggacagctgtctatcgttgtctctgattgggaatcatacttaggcagcctgttttgccaccttaggttGTGGGATGCTGTGTTTTGTTAGCTCTGTGTAGCCTACTGAATGTgacgttttgttgttttgtttggtgtTCGGATTTaataaagaatcatgaacacgtaccacgctgcaccttggtccacttcttcaggACGAGCGTTAATTCATGATCATTTAAACTGAAttgaatgtttagaatgtttaatTTTTGAGGTGATCCCTGACTTGAAGCAGTACAAAAATACATCTAAACATTCTAATTCATTCAGTTTATATTCTCATGATGTAACGCTCGtcggaagaagtggaccaaggtgcagcgtggtacgtgttcatgattctATATTAAGCGCCCATCAGATAGGGATATTAAACAGTCCTGTCAGAGTGAGACACAGACCACATGCGCCACATGGGATTTAAAGGATTAGTTATATCTTTGATTAATGGAACAATCAAATATTATGGGGAGATAATAGTGTTTCAGGGTGTTTCATCTTCACTATTTTATACACACTGCATTTGTTATTTGTTGATCCTTTTCTGCTACATCTGCTTCTGGACATTTTAATAAAAAGCAGATCTTTAATCACTA
>XM_036937543.1
ACTGATGGAATGTTCAGCAGGTATAAATGCAGTTCTTAGAGGAAGCAGTAGACTAGAAGGAcctggcagagacagagagacaagaagCTTTCACAGGTTTTCACACACATCTCAAGATAGCACTGTGGAAACactgacctgacagAATGTTCTTAATCCTGGTTGTCACAATGTCCTTGGCTGGCTGCTTGGCAATGCCCATCAAAGACCCCTACTCGTATTCCTCTGCGGTGGGTCAGGGAGGTGGCACCCCATTTGCTTCCTACGGTGAGGGGCGCATTACGGGAGTCAGAGTGTGGGagaacaacaactactactactactactacaacaacaacgcCTACATCAGTGGGTTCCAGCTGAGATACGGCAACACCTGGTCTCCTGTGTTCGGTAACGAAGTGGGTGAAAAGCAGGAGATGGATCTGTTTAATGATGAGGCCATCGTTGAGGTGTCTGGGAAGTACAACCCAGCAGACTACATCTGCTACCTGGTGTTAACCACCAACATGGGGCGCACTCTGTCAGCCGGCATGCCCAACCAAGTCTCCTTCAACTTCTACCCATCCAACATGGGCAATGAGCTGAGGATCCTCAGCGGTCGCTTCAACGGTGCTGGAATCACCTCCATCGGAGCCCACTGGGGATTTGTGGACATGGAAGGGGCTGGAAACAGTACTCTGGGAACAGCACTGGAAACAGTAACTCCTATTTATTAGGGGGAAAAAGTATGTCTTGCTCTTTGGGATGGTATCCCAgatacagattaagcctagtcctggactagttactttcaatggagattctccattcaacatgctttttagtccaggagtaAACTTAATCTGGGTCCAGGAAACTGGCCTTATATGTTGGACGGATGTTTGACATAGACGCTGACAGAACTGTTTTTTTATATCACTATCTGATGGGGGCttcatgtgtcacgccctgaccttagatcagggtgtgatttgggtggtcattctatgttctttatttctatgttttgggtttctatgttttggttctcaatcagggacagctgtctatcgttgtctctgattgggaatcatacttaggcagcctgttttgccaccttaggttGTGGGATGCTGTGTTTTGTTAGCTCTGTGTAGCCTACTGAATGTgacgttttgttgttttgtttggtgtTCGGATTTaataaagaatcatgaacacgtaccacgctgcaccttggtccacttcttcaggACGAGCGTTAATTCATGATCATTTAAACTGAAttgaatgtttagaatgtttaatTTTTGAGGTGATCCCTGACTTGAAGCAGTACAAAAATACATCTAAACATTCTAATTCATTCAGTTTATATTCTCATGATGTAACGCTCGtcggaagaagtggaccaaggtgcagcgtggtacgtgttcatgattctATATTAAGCGCCCATCAGATAGGGATATTAAACAGTCCTGTCAGAGTGAGACACAGACCACATGCGCCACATGGGATTTAAAGGATTAGTTATATCTTTGATTAATGGAACAATCAAATATTATGGGGAGATAATAGTGTTTCAGGGTGTTTCATCTTCACTATTTTATACACACTGCATTTGTTATTTGTTGATCCTTTTCTGCTACATCTGCTTCTGGACATTTTAATAAAAAGCAGATCTTTAATCACTA

Function

NR:

description
zymogen granule membrane protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937539.1 False 1676 mRNA 0.44 5 10293799 10296592
XM_036937543.1 True 1679 mRNA 0.44 5 10293799 10296592

Neighbor

gene id symbol gene type direction distance location
LOC110517641 LOC106584755 coding upstream 55420 10235740 ~ 10238379 (+)
LOC118937668 LOC106584755 coding upstream 74227 10217269 ~ 10219572 (+)
LOC110507434 LOC106584755 coding upstream 104684 10186105 ~ 10189115 (+)
LOC110520765 NA coding upstream 109560 10172564 ~ 10184239 (+)
LOC110507402 LOC106595324 coding upstream 143003 10122445 ~ 10150796 (+)
LOC110535244 ctnnb1 coding downstream 69540 10366101 ~ 10402645 (+)
LOC110507508 LOC106605488 coding downstream 329994 10626586 ~ 10710360 (+)
washc5 kiaa0196 coding downstream 735400 11031992 ~ 11083098 (+)
nsmce2 LOC106606151 coding downstream 787769 11084361 ~ 11097464 (+)
LOC110512016 LOC106564714 coding downstream 906295 11202887 ~ 11211212 (+)
G112200 NA non-coding upstream 203568 10085984 ~ 10090231 (+)
LOC110507380 LOC106573899 non-coding upstream 257941 10020205 ~ 10035867 (+)
G112180 NA non-coding upstream 264255 10028035 ~ 10029544 (+)
G112179 NA non-coding upstream 271294 10022256 ~ 10022505 (+)
G112133 NA non-coding upstream 277872 10014839 ~ 10015927 (+)
G112556 NA non-coding downstream 32958 10329550 ~ 10329961 (+)
G112566 NA non-coding downstream 50104 10346696 ~ 10346984 (+)
G112585 NA non-coding downstream 68801 10365393 ~ 10365667 (+)
G112605 NA non-coding downstream 111833 10408425 ~ 10408770 (+)
LOC118937659 NA other upstream 517348 9773574 ~ 9776807 (+)
LOC110506952 LOC106606100 other upstream 569928 9701990 ~ 9742723 (+)
G111788 NA other upstream 849758 9440309 ~ 9444041 (+)
G111453 NA other upstream 962183 9330269 ~ 9331616 (+)
LOC110535224 aif1 other upstream 1064774 9221418 ~ 9229025 (+)
G112697 NA other downstream 514926 10811518 ~ 10826063 (+)
fbxo32 fbxo32 other downstream 944140 11227497 ~ 11243074 (+)
elovl4a LOC106606161 other downstream 964962 11260912 ~ 11275480 (+)
G113285 NA other downstream 1118339 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 1181384 11477976 ~ 11482741 (+)

Expression


Co-expression Network