Item | Value |
---|---|
gene id | LOC110535244 |
gene name | ctnnb1 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048566.1 |
NCBI id | CM023220.2 |
chromosome length | 103806877 |
location | 10366101 ~ 10402645 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
ctnnb1 | Enables cadherin binding activity. Involved in positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification. Acts upstream of or within several processes, including determination of dorsal/ventral asymmetry; ectoderm development; and glomerular filtration. Located in several cellular components, including intercalated disc; microvillus; and zonula adherens. Part of catenin complex. Is expressed in several structures, including EVL; adaxial cell; brain; germ ring; and gonad. Human ortholog(s) of this gene implicated in several diseases, including autosomal dominant non-syndromic intellectual disability 19; exudative vitreoretinopathy 7; hepatocellular carcinoma (multiple); reproductive organ cancer (multiple); and urinary system cancer (multiple). Orthologous to human CTNNB1 (catenin beta 1). |
id | name | namespace |
---|---|---|
GO:0003337 | mesenchymal to epithelial transition involved in metanephros morphogenesis | biological_process |
GO:0001711 | endodermal cell fate commitment | biological_process |
GO:0072079 | nephron tubule formation | biological_process |
GO:0051145 | smooth muscle cell differentiation | biological_process |
GO:0045743 | positive regulation of fibroblast growth factor receptor signaling pathway | biological_process |
GO:0048489 | synaptic vesicle transport | biological_process |
GO:0032331 | negative regulation of chondrocyte differentiation | biological_process |
GO:0043587 | tongue morphogenesis | biological_process |
GO:0003136 | negative regulation of heart induction by canonical Wnt signaling pathway | biological_process |
GO:0031016 | pancreas development | biological_process |
GO:0043627 | response to estrogen | biological_process |
GO:0042475 | odontogenesis of dentin-containing tooth | biological_process |
GO:0043066 | negative regulation of apoptotic process | biological_process |
GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
GO:0048262 | determination of dorsal/ventral asymmetry | biological_process |
GO:0060441 | epithelial tube branching involved in lung morphogenesis | biological_process |
GO:0007016 | obsolete cytoskeletal anchoring at plasma membrane | biological_process |
GO:0043410 | positive regulation of MAPK cascade | biological_process |
GO:0048599 | oocyte development | biological_process |
GO:0030539 | male genitalia development | biological_process |
GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
GO:0001569 | branching involved in blood vessel morphogenesis | biological_process |
GO:0048617 | embryonic foregut morphogenesis | biological_process |
GO:0014010 | Schwann cell proliferation | biological_process |
GO:0009950 | dorsal/ventral axis specification | biological_process |
GO:0009954 | proximal/distal pattern formation | biological_process |
GO:0060769 | positive regulation of epithelial cell proliferation involved in prostate gland development | biological_process |
GO:0001889 | liver development | biological_process |
GO:0000578 | embryonic axis specification | biological_process |
GO:0007398 | ectoderm development | biological_process |
GO:0007403 | glial cell fate determination | biological_process |
GO:0050808 | synapse organization | biological_process |
GO:0045669 | positive regulation of osteoblast differentiation | biological_process |
GO:0060026 | convergent extension | biological_process |
GO:0001658 | branching involved in ureteric bud morphogenesis | biological_process |
GO:0045671 | negative regulation of osteoclast differentiation | biological_process |
GO:0030326 | embryonic limb morphogenesis | biological_process |
GO:0072033 | renal vesicle formation | biological_process |
GO:0030902 | hindbrain development | biological_process |
GO:0022009 | central nervous system vasculogenesis | biological_process |
GO:0007160 | cell-matrix adhesion | biological_process |
GO:0072053 | renal inner medulla development | biological_process |
GO:0072054 | renal outer medulla development | biological_process |
GO:0001702 | gastrulation with mouth forming second | biological_process |
GO:0031528 | microvillus membrane | cellular_component |
GO:0005829 | cytosol | cellular_component |
GO:0009898 | cytoplasmic side of plasma membrane | cellular_component |
GO:0045202 | synapse | cellular_component |
GO:0005915 | zonula adherens | cellular_component |
GO:0005916 | fascia adherens | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0005938 | cell cortex | cellular_component |
GO:0030018 | Z disc | cellular_component |
GO:0005667 | transcription regulator complex | cellular_component |
GO:0030027 | lamellipodium | cellular_component |
GO:0043198 | dendritic shaft | cellular_component |
GO:0030057 | desmosome | cellular_component |
GO:0016323 | basolateral plasma membrane | cellular_component |
GO:0016342 | catenin complex | cellular_component |
GO:0005198 | structural molecule activity | molecular_function |
GO:0019901 | protein kinase binding | molecular_function |
GO:0003713 | transcription coactivator activity | molecular_function |
GO:0045294 | alpha-catenin binding | molecular_function |
GO:0045296 | cadherin binding | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036937587.1 | False | 3264 | mRNA | 0.53 | 17 | 10366132 | 10402645 |
XM_036937595.1 | False | 3234 | mRNA | 0.53 | 16 | 10366132 | 10402645 |
XM_036937619.1 | False | 3039 | mRNA | 0.53 | 16 | 10366132 | 10402645 |
XM_036937602.1 | False | 3240 | mRNA | 0.54 | 17 | 10366311 | 10402645 |
XM_036937607.1 | False | 3177 | mRNA | 0.54 | 17 | 10380362 | 10402645 |
XM_036937597.1 | False | 3192 | mRNA | 0.53 | 17 | 10391635 | 10402645 |
XM_036937599.1 | False | 3335 | mRNA | 0.53 | 17 | 10392780 | 10402645 |
XM_036937613.1 | False | 3177 | mRNA | 0.54 | 17 | 10394214 | 10402645 |
TU128544 | True | 335 | lncRNA | 0.46 | 2 | 10366101 | 10391656 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110507415 | LOC106584755 | coding | upstream | 69540 | 10293799 ~ 10296592 (+) |
LOC110517641 | LOC106584755 | coding | upstream | 127753 | 10235740 ~ 10238379 (+) |
LOC118937668 | LOC106584755 | coding | upstream | 146560 | 10217269 ~ 10219572 (+) |
LOC110507434 | LOC106584755 | coding | upstream | 177017 | 10186105 ~ 10189115 (+) |
LOC110520765 | NA | coding | upstream | 181893 | 10172564 ~ 10184239 (+) |
LOC110507508 | LOC106605488 | coding | downstream | 223941 | 10626586 ~ 10710360 (+) |
washc5 | kiaa0196 | coding | downstream | 629347 | 11031992 ~ 11083098 (+) |
nsmce2 | LOC106606151 | coding | downstream | 681716 | 11084361 ~ 11097464 (+) |
LOC110512016 | LOC106564714 | coding | downstream | 800242 | 11202887 ~ 11211212 (+) |
fbxo32 | fbxo32 | coding | downstream | 824852 | 11227497 ~ 11243074 (+) |
G112585 | NA | non-coding | upstream | 465 | 10365393 ~ 10365667 (+) |
G112566 | NA | non-coding | upstream | 19148 | 10346696 ~ 10346984 (+) |
G112556 | NA | non-coding | upstream | 36171 | 10329550 ~ 10329961 (+) |
G112273 | NA | non-coding | upstream | 64677 | 10258852 ~ 10301455 (+) |
G112241 | LOC106584755 | non-coding | upstream | 69433 | 10183551 ~ 10296699 (+) |
G112605 | NA | non-coding | downstream | 5780 | 10408425 ~ 10408770 (+) |
G112610 | NA | non-coding | downstream | 19988 | 10422633 ~ 10423207 (+) |
G112612 | NA | non-coding | downstream | 25168 | 10427813 ~ 10428226 (+) |
G112613 | NA | non-coding | downstream | 25647 | 10428292 ~ 10428545 (+) |
G112616 | NA | non-coding | downstream | 31915 | 10434560 ~ 10434835 (+) |
LOC118937659 | NA | other | upstream | 589681 | 9773574 ~ 9776807 (+) |
LOC110506952 | LOC106606100 | other | upstream | 642261 | 9701990 ~ 9742723 (+) |
G111788 | NA | other | upstream | 922091 | 9440309 ~ 9444041 (+) |
G111453 | NA | other | upstream | 1034516 | 9330269 ~ 9331616 (+) |
LOC110535224 | aif1 | other | upstream | 1137107 | 9221418 ~ 9229025 (+) |
G112697 | NA | other | downstream | 408873 | 10811518 ~ 10826063 (+) |
elovl4a | LOC106606161 | other | downstream | 858909 | 11260912 ~ 11275480 (+) |
G113285 | NA | other | downstream | 1012286 | 11414931 ~ 11415178 (+) |
G113313 | LOC102781083 | other | downstream | 1075331 | 11477976 ~ 11482741 (+) |