LOC110512016 (LOC106564714)


Basic Information

Item Value
gene id LOC110512016
gene name LOC106564714
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11202887 ~ 11211212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937927.1
gggggggggcgagagagagagagatgactgggTGAATGTTGCTGATAGCAGAGCTGAGTGAAAGGACACCTACCTCAGACGCATTAGAAGACTGAGACAagAATGGACCAATCAAAGCCACACGTAGATGTGTTCCACTACAGGAACGAGGAACAGTCGTCCTACCTCCTGCTGCAGCTGAACCGTCTGAGACAGAACAGGGTCCTTACCGACGTGCTGCTCTGTTCAGATAACACAGAGATCCCCTGCCACCGTAACATCCTGGCCTCCAGCAGTCCTTACTTCACGGCCATGTTCTGTCACCACTTCCGAGAGACGAACCAGGAGAAGGTGGATCTGAAGgGGATCACCTCCAGCATCCTGAGTGACATCGTCGACTACGTCTACACAGGGGTCATAACCATCACCATGGAGATAGTACTGCCCCTTATGCAGGCTTCCTCCATGCTCCAGTACACCAGGCTGTTCGAGGCCTGCTCCTCATTCCTGCAGGAGCAGCTGAGCCCAGACAACTGCCTCAGCATGATGCGGCTGGCAAAGATACTACACTGCAACAGCCTGAAGGAGAAGGCCAGGGAGATGGCAGTACAGAGCTTCTCCGACGTCTCTACCTCTGAGGACCTGTGTGAGCTCTCCTTATCTGAGCTGATGGGTTACCTGGAGGATGACTGGCTCTGTGCTGAGGAGGAGCAGgTGTTCGAGACGTTACTGGCGTGGATCCACCACGACCCGTTCTCACGGCGCGGCGCCATCTCCGACCTCTTCAGGAAGGTGCGTCTGCGCTACATCCACCCCACCTACCTGTTCCAGTTCATCGCCAGCGACCCCCTCGTCCAGTCCTCCACCCTGTGCACCGAGGTCATCGAGTCCGTCCGCCGCCTCATGTTCTCCATCACCACTAAGTGTGGGTCGGACCTCAAGCCCCTGTGGGTGACCCCGCGGCGCTTCACCTGCCGGGAGACCCTGGTTCTAGTTGGCGGCCGCAAGAACAACGAACAGACGTCCCGCGAAGCACTCCTGTTCGACGAGAGGACTCAGCGCTGGCAGTGGCTGGCCAAGCTGCCCTTGCGACTCTATAAGGCCTCCTATGTCTGTATCCACAGTATCCTGTATGTCCTGGGAGGCCTCACCATGAACACCAAGCACAGAGTGGTTAGCACCACTGTCTATACGTTGTCTCTGAAGACCAACCAGTGGAGGACGACCGAGCCCATGATCCAGCCGCGCTTCGCCcaccagtctgtctcctacctgCACTTTATCTTCGTCCTGGGGGGCCTGGGGCCGGAGAAGCAGGCGTGCGACACGGTGCAAAGGTACAATAGTATGTTCAACCAATGGGAGGCTATGGTTCCCATGCCGACGGCTGTGCTACACCCGGCGGTTGCCGCTAACGATCAAAGAATCTACATGTTCGGGGGAGAGGACGCGATGCAGAACCCTGTCAGGATGATACAGGTGTATCACATTGGCAGGAATATGTGGTCTACGATGGAGACCAGGACAGTGAAGAACGTTTCTGCACCAGCAGCAGTCATCGATGACAAGATCTACATTATCGGAGGCTACACCAGAAGAATGATCGCGTACGACACCAAAGCCAACCGCTTTACGAAGTGTGAGAACCTGAAGCAGAGGAGGATGCATCACGCCGTGGCGGTGCTCGACGACAAACTGTACGTGACCGGAGGACGCTTCATCAACGGACACGACGTCATAGAGGACTCCGACAGCTTCGAGTGCTACGACCCGAAGACTGACGCGTGGACGACGAAGGGGACGTTGCCGTACAGGCTGTTTGACCACGGTTCTCTGTCCCTGGTGTGTGTCTCCAACAAATCCAAGCCTCCCTGAGTGTgtgttgtggatgtgtgtgtcCCCTTCAGATGATACTCTGCCCGACCAAGCAAAAAGACATTAACTGCTCATAgcgtggaactgagaaaaatACCTTTTATCTACCTTGGTGTCACAGTATCTTCATGCAGTTACTGGCTAACATGACCCCCCATTTTCTCCTGAACACTATACAACcgaggcaggatacttgtccacatgattaagaATGTATTTAATGAAGCAAAAAAATTGACATGAACTCATTTTGGACCAAATGAGCAGTTATTGCCTTCTTGCATGGTAGGGCAATACTGTCTATACATATGTTGCTGCTCAGATGTGACTCTGACCAACACAGATGTTGCAAAGAACATCTCTGATGTCATTTCCTGTCCCacactgttacggtgagtgaatgaggacccaaaagcgaactaacttaaacagagcttctttaataaccaaaca

Function

NR:

description
kelch-like protein 38

GO: NA

KEGG:

id description
K13959 KLHL38; kelch-like protein 38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937927.1 True 2307 mRNA 0.54 8 11202887 11211212

Neighbor

gene id symbol gene type direction distance location
nsmce2 LOC106606151 coding upstream 105423 11084361 ~ 11097464 (+)
washc5 kiaa0196 coding upstream 119789 11031992 ~ 11083098 (+)
LOC110507508 LOC106605488 coding upstream 492527 10626586 ~ 10710360 (+)
LOC110535244 ctnnb1 coding upstream 800242 10366101 ~ 10402645 (+)
LOC110507415 LOC106584755 coding upstream 906295 10293799 ~ 10296592 (+)
fbxo32 fbxo32 coding downstream 16285 11227497 ~ 11243074 (+)
elovl4a LOC106606161 coding downstream 49700 11260912 ~ 11275480 (+)
LOC118944054 NA coding downstream 63469 11274681 ~ 11277557 (+)
LOC110520740 LOC106592347 coding downstream 95962 11307174 ~ 11324807 (+)
soga3a LOC106593623 coding downstream 116814 11328026 ~ 11373000 (+)
G113210 NA non-coding upstream 30080 11172577 ~ 11172807 (+)
G113209 NA non-coding upstream 30538 11172041 ~ 11172349 (+)
G113208 NA non-coding upstream 31246 11171378 ~ 11171641 (+)
G113207 NA non-coding upstream 31774 11170905 ~ 11171113 (+)
G113205 NA non-coding upstream 36028 11165187 ~ 11166859 (+)
G113233 NA non-coding downstream 19354 11230566 ~ 11231000 (+)
G113234 NA non-coding downstream 19962 11231174 ~ 11231475 (+)
G113236 NA non-coding downstream 22650 11233862 ~ 11234335 (+)
G113199 NA non-coding downstream 32498 11243710 ~ 11245562 (+)
G112697 NA other upstream 376824 10811518 ~ 10826063 (+)
LOC118937659 NA other upstream 1426436 9773574 ~ 9776807 (+)
LOC110506952 LOC106606100 other upstream 1479016 9701990 ~ 9742723 (+)
G111788 NA other upstream 1758846 9440309 ~ 9444041 (+)
G111453 NA other upstream 1871271 9330269 ~ 9331616 (+)
G113285 NA other downstream 203719 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 266764 11477976 ~ 11482741 (+)
G113396 NA other downstream 497391 11708603 ~ 11709777 (+)

Expression


Co-expression Network