LOC110520740 (LOC106592347)


Basic Information

Item Value
gene id LOC110520740
gene name LOC106592347
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11307174 ~ 11324807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937977.1
GAGGTGACGTAATGTACTGTACATTGAAACAGTTTCATTGGTGGTTGGGACCGTGCGCTCAGAGATTCAGAGGAGGGGAAGTCTCCTCCCCATCACTGTCACCGGGATACTGCTGACAGAAGAACACAGCGCAGGGAGGGACTGTCTGGGTGATGTGATGTGGATGTAGACTAGGCTATTGAACTGAACGTCCATCCTCTCTGTATGACACCATGAACCCTGCCTCGGGCGGCGCTGCCGACTCCCGCAGCCAGCTAGACAATAGCAACAGAAAGCAGCAGCAACAGCGCGCTTCCTCCCCGGCTGGCGGCAAAGACATTGGATCTAAAGAGACACCGAAAAGCAGCACTCCGTCAAAGATCATCACGTCAAAGCAGTGCGGAGGAGGGAGAGGCAACCGCGGCAGCTCCCCGGTCTCAACGGCTACCAGCAAAGACAGACTGTCTTCTTCTTCTAAAGGCGCGGCAAGCGCGGCAGGCGCGGCCCCTGTCCAGTCCGATGGTGCTGAAATCCATACGTTGACCAGGGCGGCGGCGGCGGCTGGGAGCGGCAGAGGAGCGGCAGAGGAGCGCAGTAGTCCGTCTGAAGACTCGCGTTGTACTGATATATCGTGTTTGAAGGGGGATACGACACGGGTTGTTTCTGATCAGCCTTGTTCATCCAAATCTCCTAAATTGAAGAACAATAACccgagaggagggggaggagaaggcgAGGCTAGCAGCACAGCGACCGGTAACAAAAAGAGCTCCGGCAAGAGCAGTGTGGGCTGCGGCCCTGGCTTCTGGAGAGAGGGATGTTTGCAGTCGGAGCTGATCCAGTTTCACCTGAATAAAAGCTTAAAGAAAGGAGGAGGAAAGATGAAGGCGAAGACACCGTCTCCCCCGGAGCCGGTCACGGAAACGGCGGAACCAGAGGATCTCTCCCCTGAGGCCATCGTTAACGAGCCCGAACCGGTACCTGAGCCCGACCAGCTATTTCAGGAGGAGATAGAGAAACTGGAGGATGAAAACGATGAACTAAAGACTGAGATAGAGGAGATGAGAGCGGAGATGGACGAGATGAGAGACACGTTCTACGAAGAGGACGCGTGCCAGCTGCAGGACATGCGTCGCGAGCTGGAGCGAGCCAATAAGAACTGCCGGATTCTCCAGTACCGTCTGAGGAAGgcggagaggaagaggatgcgGTTCGCTCAGACCGGAGAGGTAGACGGAGAGCTACTGAGGGCCCTGGAGCAGGACTTGAAGgtAGCGAAGGACGTGTCAGTGCGTCTGCACCATGAGTTGGAGAATGTGGAGGAGAAAAGGACGAAGACGGAGGAGGAGAACGAGAAACTAAGGCAAAAGCTGATAGAGGTGGAGGTGACCAAACAGGCCCTGCACAACCAACTGGAGAAGGCCAAGGAGCTGTcactgaagaggagaggaggcagggatGTTCAGAAGGAGAAAAGGATTCCACAGACTCCAATAGAGgAGGACAACGAAGATCTGAAATGCCAGCTAGCGTTCATCAAGGAGGAAGCCATTTTAATGAGGAAAAAAATGGCTAAAATTGACAAGGAGAAGGACCGGCTGGAACACGAGCTGCAGAAGTACCGCTCTTTCTACGGGGATGTGGACAGCCCTGGGCCCAAGGGAGAGGCTGGAGGACCAGCCACCACCCGGGAGTCAGAGCTGaaactgagactgagactggtgGAGGAGGAAGCCAACATCCTGGGGAGGAAGATCgtagagctggaggtggagaatAGAGGACTGAAGGCTGAACTGGAGGACATGAGAGACAGGGATGAGGTGGCAGGAGGCTCGGCTGAGCATGGCTgcagcagggagcagggagaggaacTCAGGGAGCTGAGACAGCAGCTACAGCTGGTGGAGGACGAGGCAGAGCTACTTAGGAGGAACCTGCAGGACGCAGAGGAGGACAACAACAAGGTGACGGGGGAGCTGAACAAGCTGAAGTACAAGGAGGGCTCCAGGCACGGCGCCGGGGGTGGAGGAGGTGGCGCCGGGGCGGCTGCAGACCGGGCCAAGGTGGAGGTCCTGCAGGAGGAGCTAAAGGCTGCCAGGCTGCAGATCAACGAGCTGAGTGGCAAGGTGATGCAGATGCAGTATGAGAACCGGGTCCTGCTGTCCAACATGCAGCGCTACGACCTGGCGTCACACCTGGGCATCAGGGCCAGCCCCCGGGAAAGTGACGCAGAGAGTGACGGAGGAGATGACGCCTCCACCTCATCGCGCTTCCCACCCCACCGTAAACGAGAAGGCCCCATCGGAGGGGAGAGCGACTCGGATGAGGTGCGTAACATCCGGTGCCTGACCCCAACCCGCACCCTCTACTCCCCCGAGGGCCGTTTCCTCCCTCGCAGCCTGAAGGACCGGCAGCAGATGGTAGACATCCGTATAGAAGCAGAGCGGCTGGGCCGGACCGTCGACAGGCTGATAGCAGACACCAGCACCATCATGGCCGAGGCCCGGGTCTATATGGTCTCCAACGGGGAGCTTTACGAGGAGGAAGGGAGCACCGTCAGGGAGCACGAGTTGTTGTACAGGATCACCGCTCAGATGAAGGCCTTCAGGAAGGAGCTGCAGGGTTTTATAGACAGACTGGATGTCCCCAAGCCAGaggacaaagaggaggaggaaccaCTGTCCATGTTTCAGCCCATCATTCTGCTCATCCTCATCCTCGTCCTGTTCTCTTCACTCTCCTACGCCACCATCTTCAAACTCGTCTTCCTCTTCACTCTCTTCTTCGTCCTGTAACGTCCGTCTCACTTTGACATAGACACATATTTTTGTTtagtcatattttttatttatttattttatttttattttggaaTATTCCCATCTAAGGTCACAAGTGATACGGGACACTATTCCACGTTTCAGCAGTTACTATTTACAAGCTTTCAAcacacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacac
>XM_036937987.1
TACTGCAGCCATTCCGTGCGTGCGGGCTTGTAGCCTAGTCTGATGGTGTTGGGAGATTCAAATGCTGGATTTAGATGGTTTACTTCTACTGCAACCTCATTGTGGGTGGATTGGGCCAGTGTTGTTATGAAGGTGCGCTTTACATAGAATATTAATTTCAAATATGCTCTATATTTAAACACCTCTCAAAATAGAGTGGCCTCTCGTTTAGCCTACTTGAGTCTACTTTCAAGAAACGCATGAAAGCAAATCACCACCGGCTTCTCGGCTTCTTTTTCTTTGCATTCGTACTTAAAATAACTATGTGTTCACTGGATTATTTTTCAGACAGAAGAACACAGCGCAGGGAGGGACTGTCTGGGTGATGTGATGTGGATGTAGACTAGGCTATTGAACTGAACGTCCATCCTCTCTGTATGACACCATGAACCCTGCCTCGGGCGGCGCTGCCGACTCCCGCAGCCAGCTAGACAATAGCAACAGAAAGCAGCAGCAACAGCGCGCTTCCTCCCCGGCTGGCGGCAAAGACATTGGATCTAAAGAGACACCGAAAAGCAGCACTCCGTCAAAGATCATCACGTCAAAGCAGTGCGGAGGAGGGAGAGGCAACCGCGGCAGCTCCCCGGTCTCAACGGCTACCAGCAAAGACAGACTGTCTTCTTCTTCTAAAGGCGCGGCAAGCGCGGCAGGCGCGGCCCCTGTCCAGTCCGATGGTGCTGAAATCCATACGTTGACCAGGGCGGCGGCGGCGGCTGGGAGCGGCAGAGGAGCGGCAGAGGAGCGCAGTAGTCCGTCTGAAGACTCGCGTTGTACTGATATATCGTGTTTGAAGGGGGATACGACACGGGTTGTTTCTGATCAGCCTTGTTCATCCAAATCTCCTAAATTGAAGAACAATAACccgagaggagggggaggagaaggcgAGGCTAGCAGCACAGCGACCGGTAACAAAAAGAGCTCCGGCAAGAGCAGTGTGGGCTGCGGCCCTGGCTTCTGGAGAGAGGGATGTTTGCAGTCGGAGCTGATCCAGTTTCACCTGAATAAAAGCTTAAAGAAAGGAGGAGGAAAGATGAAGGCGAAGACACCGTCTCCCCCGGAGCCGGTCACGGAAACGGCGGAACCAGAGGATCTCTCCCCTGAGGCCATCGTTAACGAGCCCGAACCGGTACCTGAGCCCGACCAGCTATTTCAGGAGGAGATAGAGAAACTGGAGGATGAAAACGATGAACTAAAGACTGAGATAGAGGAGATGAGAGCGGAGATGGACGAGATGAGAGACACGTTCTACGAAGAGGACGCGTGCCAGCTGCAGGACATGCGTCGCGAGCTGGAGCGAGCCAATAAGAACTGCCGGATTCTCCAGTACCGTCTGAGGAAGgcggagaggaagaggatgcgGTTCGCTCAGACCGGAGAGGTAGACGGAGAGCTACTGAGGGCCCTGGAGCAGGACTTGAAGgtAGCGAAGGACGTGTCAGTGCGTCTGCACCATGAGTTGGAGAATGTGGAGGAGAAAAGGACGAAGACGGAGGAGGAGAACGAGAAACTAAGGCAAAAGCTGATAGAGGTGGAGGTGACCAAACAGGCCCTGCACAACCAACTGGAGAAGGCCAAGGAGCTGTcactgaagaggagaggaggcagggatGTTCAGAAGGAGAAAAGGATTCCACAGACTCCAATAGAGgAGGACAACGAAGATCTGAAATGCCAGCTAGCGTTCATCAAGGAGGAAGCCATTTTAATGAGGAAAAAAATGGCTAAAATTGACAAGGAGAAGGACCGGCTGGAACACGAGCTGCAGAAGTACCGCTCTTTCTACGGGGATGTGGACAGCCCTGGGCCCAAGGGAGAGGCTGGAGGACCAGCCACCACCCGGGAGTCAGAGCTGaaactgagactgagactggtgGAGGAGGAAGCCAACATCCTGGGGAGGAAGATCgtagagctggaggtggagaatAGAGGACTGAAGGCTGAACTGGAGGACATGAGAGACAGGGATGAGGTGGCAGGAGGCTCGGCTGAGCATGGCTgcagcagggagcagggagaggaacTCAGGGAGCTGAGACAGCAGCTACAGCTGGTGGAGGACGAGGCAGAGCTACTTAGGAGGAACCTGCAGGACGCAGAGGAGGACAACAACAAGGTGACGGGGGAGCTGAACAAGCTGAAGTACAAGGAGGGCTCCAGGCACGGCGCCGGGGGTGGAGGAGGTGGCGCCGGGGCGGCTGCAGACCGGGCCAAGGTGGAGGTCCTGCAGGAGGAGCTAAAGGCTGCCAGGCTGCAGATCAACGAGCTGAGTGGCAAGGTGATGCAGATGCAGTATGAGAACCGGGTCCTGCTGTCCAACATGCAGCGCTACGACCTGGCGTCACACCTGGGCATCAGGGCCAGCCCCCGGGAAAGTGACGCAGAGAGTGACGGAGGAGATGACGCCTCCACCTCATCGCGCTTCCCACCCCACCGTAAACGAGAAGGCCCCATCGGAGGGGAGAGCGACTCGGATGAGGTGCGTAACATCCGGTGCCTGACCCCAACCCGCACCCTCTACTCCCCCGAGGGCCGTTTCCTCCCTCGCAGCCTGAAGGACCGGCAGCAGATGGTAGACATCCGTATAGAAGCAGAGCGGCTGGGCCGGACCGTCGACAGGCTGATAGCAGACACCAGCACCATCATGGCCGAGGCCCGGGTCTATATGGTCTCCAACGGGGAGCTTTACGAGGAGGAAGGGAGCACCGTCAGGGAGCACGAGTTGTTGTACAGGATCACCGCTCAGATGAAGGCCTTCAGGAAGGAGCTGCAGGGTTTTATAGACAGACTGGATGTCCCCAAGCCAGaggacaaagaggaggaggaaccaCTGTCCGTCACAAGTGATACGGGACACTATTCCACGTTTCAGCAGTTACTATTTACAAGCTTTCAAcacacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacacACC
>XM_036937979.1
TTCCGTGCGTGCGGGCTTGTAGCCTAGTCTGATGGTGTTGGGAGATTCAAATGCTGGATTTAGATGGTTTACTTCTACTGCAACCTCATTGTGGGTGGATTGGGCCAGTGTTGTTATGAAGACAGAAGAACACAGCGCAGGGAGGGACTGTCTGGGTGATGTGATGTGGATGTAGACTAGGCTATTGAACTGAACGTCCATCCTCTCTGTATGACACCATGAACCCTGCCTCGGGCGGCGCTGCCGACTCCCGCAGCCAGCTAGACAATAGCAACAGAAAGCAGCAGCAACAGCGCGCTTCCTCCCCGGCTGGCGGCAAAGACATTGGATCTAAAGAGACACCGAAAAGCAGCACTCCGTCAAAGATCATCACGTCAAAGCAGTGCGGAGGAGGGAGAGGCAACCGCGGCAGCTCCCCGGTCTCAACGGCTACCAGCAAAGACAGACTGTCTTCTTCTTCTAAAGGCGCGGCAAGCGCGGCAGGCGCGGCCCCTGTCCAGTCCGATGGTGCTGAAATCCATACGTTGACCAGGGCGGCGGCGGCGGCTGGGAGCGGCAGAGGAGCGGCAGAGGAGCGCAGTAGTCCGTCTGAAGACTCGCGTTGTACTGATATATCGTGTTTGAAGGGGGATACGACACGGGTTGTTTCTGATCAGCCTTGTTCATCCAAATCTCCTAAATTGAAGAACAATAACccgagaggagggggaggagaaggcgAGGCTAGCAGCACAGCGACCGGTAACAAAAAGAGCTCCGGCAAGAGCAGTGTGGGCTGCGGCCCTGGCTTCTGGAGAGAGGGATGTTTGCAGTCGGAGCTGATCCAGTTTCACCTGAATAAAAGCTTAAAGAAAGGAGGAGGAAAGATGAAGGCGAAGACACCGTCTCCCCCGGAGCCGGTCACGGAAACGGCGGAACCAGAGGATCTCTCCCCTGAGGCCATCGTTAACGAGCCCGAACCGGTACCTGAGCCCGACCAGCTATTTCAGGAGGAGATAGAGAAACTGGAGGATGAAAACGATGAACTAAAGACTGAGATAGAGGAGATGAGAGCGGAGATGGACGAGATGAGAGACACGTTCTACGAAGAGGACGCGTGCCAGCTGCAGGACATGCGTCGCGAGCTGGAGCGAGCCAATAAGAACTGCCGGATTCTCCAGTACCGTCTGAGGAAGgcggagaggaagaggatgcgGTTCGCTCAGACCGGAGAGGTAGACGGAGAGCTACTGAGGGCCCTGGAGCAGGACTTGAAGgtAGCGAAGGACGTGTCAGTGCGTCTGCACCATGAGTTGGAGAATGTGGAGGAGAAAAGGACGAAGACGGAGGAGGAGAACGAGAAACTAAGGCAAAAGCTGATAGAGGTGGAGGTGACCAAACAGGCCCTGCACAACCAACTGGAGAAGGCCAAGGAGCTGTcactgaagaggagaggaggcagggatGTTCAGAAGGAGAAAAGGATTCCACAGACTCCAATAGAGgAGGACAACGAAGATCTGAAATGCCAGCTAGCGTTCATCAAGGAGGAAGCCATTTTAATGAGGAAAAAAATGGCTAAAATTGACAAGGAGAAGGACCGGCTGGAACACGAGCTGCAGAAGTACCGCTCTTTCTACGGGGATGTGGACAGCCCTGGGCCCAAGGGAGAGGCTGGAGGACCAGCCACCACCCGGGAGTCAGAGCTGaaactgagactgagactggtgGAGGAGGAAGCCAACATCCTGGGGAGGAAGATCgtagagctggaggtggagaatAGAGGACTGAAGGCTGAACTGGAGGACATGAGAGACAGGGATGAGGTGGCAGGAGGCTCGGCTGAGCATGGCTgcagcagggagcagggagaggaacTCAGGGAGCTGAGACAGCAGCTACAGCTGGTGGAGGACGAGGCAGAGCTACTTAGGAGGAACCTGCAGGACGCAGAGGAGGACAACAACAAGGTGACGGGGGAGCTGAACAAGCTGAAGTACAAGGAGGGCTCCAGGCACGGCGCCGGGGGTGGAGGAGGTGGCGCCGGGGCGGCTGCAGACCGGGCCAAGGTGGAGGTCCTGCAGGAGGAGCTAAAGGCTGCCAGGCTGCAGATCAACGAGCTGAGTGGCAAGGTGATGCAGATGCAGTATGAGAACCGGGTCCTGCTGTCCAACATGCAGCGCTACGACCTGGCGTCACACCTGGGCATCAGGGCCAGCCCCCGGGAAAGTGACGCAGAGAGTGACGGAGGAGATGACGCCTCCACCTCATCGCGCTTCCCACCCCACCGTAAACGAGAAGGCCCCATCGGAGGGGAGAGCGACTCGGATGAGGTGCGTAACATCCGGTGCCTGACCCCAACCCGCACCCTCTACTCCCCCGAGGGCCGTTTCCTCCCTCGCAGCCTGAAGGACCGGCAGCAGATGGTAGACATCCGTATAGAAGCAGAGCGGCTGGGCCGGACCGTCGACAGGCTGATAGCAGACACCAGCACCATCATGGCCGAGGCCCGGGTCTATATGGTCTCCAACGGGGAGCTTTACGAGGAGGAAGGGAGCACCGTCAGGGAGCACGAGTTGTTGTACAGGATCACCGCTCAGATGAAGGCCTTCAGGAAGGAGCTGCAGGGTTTTATAGACAGACTGGATGTCCCCAAGCCAGaggacaaagaggaggaggaaccaCTGTCCATGTTTCAGCCCATCATTCTGCTCATCCTCATCCTCGTCCTGTTCTCTTCACTCTCCTACGCCACCATCTTCAAACTCGTCTTCCTCTTCACTCTCTTCTTCGTCCTGTAACGTCCGTCTCACTTTGACATAGACACATATTTTTGTTtagtcatattttttatttatttattttatttttattttggaaTATTCCCATCTAAGGTCACAAGTGATACGGGACACTATTCCACGTTTCAGCAGTTACTATTTACAAGCTTTCAAcacacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacac

Function

NR:

description
PREDICTED: protein SOGA3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937977.1 False 3054 mRNA 0.56 11 11307174 11324804
XM_036937987.1 False 3065 mRNA 0.56 10 11307920 11324807
XM_036937979.1 True 3060 mRNA 0.56 11 11307931 11324804

Neighbor

gene id symbol gene type direction distance location
LOC118944054 NA coding upstream 29617 11274681 ~ 11277557 (+)
elovl4a LOC106606161 coding upstream 31694 11260912 ~ 11275480 (+)
fbxo32 fbxo32 coding upstream 64100 11227497 ~ 11243074 (+)
LOC110512016 LOC106564714 coding upstream 95962 11202887 ~ 11211212 (+)
nsmce2 LOC106606151 coding upstream 209710 11084361 ~ 11097464 (+)
soga3a LOC106593623 coding downstream 3219 11328026 ~ 11373000 (+)
echdc1 echdc1 coding downstream 68135 11392942 ~ 11397308 (+)
fbxo43 fbxo43 coding downstream 78136 11402943 ~ 11413713 (+)
LOC110510416 LOC106596421 coding downstream 91399 11416206 ~ 11459325 (+)
LOC110511179 NA coding downstream 974732 12299517 ~ 12300453 (+)
G113256 NA non-coding upstream 1625 11304280 ~ 11305549 (+)
G113197 NA non-coding upstream 6892 11273121 ~ 11300282 (+)
G113241 NA non-coding upstream 47115 11259739 ~ 11260059 (+)
G113238 NA non-coding upstream 52670 11253868 ~ 11254504 (+)
G113200 NA non-coding upstream 59818 11245613 ~ 11247356 (+)
G113265 NA non-coding downstream 11707 11336514 ~ 11337268 (+)
G113276 NA non-coding downstream 36505 11361312 ~ 11368100 (+)
G113278 NA non-coding downstream 51143 11375950 ~ 11376160 (+)
G113279 NA non-coding downstream 54328 11379135 ~ 11379439 (+)
G112697 NA other upstream 481111 10811518 ~ 10826063 (+)
LOC118937659 NA other upstream 1530723 9773574 ~ 9776807 (+)
LOC110506952 LOC106606100 other upstream 1583303 9701990 ~ 9742723 (+)
G113285 NA other downstream 90124 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 153169 11477976 ~ 11482741 (+)
G113396 NA other downstream 383796 11708603 ~ 11709777 (+)
G114243 NA other downstream 1395601 12720408 ~ 12720693 (+)
G114244 NA other downstream 1395923 12720730 ~ 12721315 (+)

Expression


Co-expression Network