echdc1 (echdc1)


Basic Information

Item Value
gene id echdc1
gene name echdc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11392942 ~ 11397308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938002.1
CTCGTGTGTCGGTTCCAGCGAAGTGCAGCTGGCCAAGTTCCTTGTTCACTGGTTCATGTTTCCGGGGGGCGAGGTTTCAATGTAACACCACAACATTGAGCTATCAAACAGCACAGtccctctcctgtctgtttctatccctccatccttctctcctacCTTTCCCTGGTAGCAGCATGGTTCTGTCTGCAGCCAGGCAGCACCTCCTCGGGGGCATTCGGCTTGGTGCCTGTGGGCAGCACCTCCTCGGGGGCAGTCGGCCTGGTGCCTGGGGGCAGAACCTCCTCAGGGGGATTGGATCAGTTTACACCGCTGCCAAGGGGTTCCAGGAGAAGGAGATCAGAGAGAAACTCCAAGCTTTCCCTGGGGGATCTATAGACCTTGTCAAACAGGAGTCGGGCATCGCGGTACTGACCGTCAACAACCCTGCTCGCATGAACGCTTTCTCTGGTTCCATGATggtggagctggaggagagggtgtcCCAGCTAGAGGAGTGGACGGAGGGCAAAGGTCTCATCATCCAGGGGGCTGCTGGGACATTCTGCTCTGGGTCAGACCTCAACGCAGTCAGGGCTATATCCAATCCTCAGGATGGGATGAAGATGTGTACGTTCATGCAGAATGCCCTGACCAGACTACTGAGGCTACCTCTGTTGTCTGTAGCTCTGGTGGAAGGGAACGCACTGGGGGGAGGAGCTGAACTCACTACTGCCTGTGACTTTAGGTTGATGGCGCCGGGCGGTGTGATCCAGTTTGTCCATAAACACATGGGTCTGGTCCCTGGTTGGGGCGGTGCAGCTAGATTGGTACGCATCGTAGGCGGCCAGAACGCCCTGAAGATGCTGGGTGGCGCTTTGAAAATAGACCCAGAGATGGGGCTTCAGATTGGGCTTGCGGACAGGGTCCTGGAAGGTTCCCTGGCTGGGTCTGGAGCCAATGCCCTCCTGGAGGCAGAGCAGTGGTTGGGATGCTACACCGCGGGTCCAGCCCCGGTCATCAGAGCCATAAAGAGCGTGGTGGTGTCTGGGAGAGAGCTCCCCCTGGAGGTGGCCCTGGGGACTGAGAGGGACGTGTTCGGGACAGTGTGGGGAGGACCGGCTAACCTACAGGCTCTGGCCACTAAGGCCAAACACAAGTGAATTGACTAGTCTTGCGATTACATTGTA

Function

symbol description
echdc1 Predicted to enable carboxy-lyase activity. Predicted to be located in cytosol. Orthologous to human ECHDC1 (ethylmalonyl-CoA decarboxylase 1).

NR:

description
ethylmalonyl-CoA decarboxylase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K18426 ECHDC1; ethylmalonyl-CoA/methylmalonyl-CoA decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938002.1 True 1169 mRNA 0.57 6 11392942 11397308

Neighbor

gene id symbol gene type direction distance location
soga3a LOC106593623 coding upstream 19942 11328026 ~ 11373000 (+)
LOC110520740 LOC106592347 coding upstream 68135 11307174 ~ 11324807 (+)
LOC118944054 NA coding upstream 115385 11274681 ~ 11277557 (+)
elovl4a LOC106606161 coding upstream 117462 11260912 ~ 11275480 (+)
fbxo32 fbxo32 coding upstream 149868 11227497 ~ 11243074 (+)
fbxo43 fbxo43 coding downstream 5635 11402943 ~ 11413713 (+)
LOC110510416 LOC106596421 coding downstream 18898 11416206 ~ 11459325 (+)
LOC110511179 NA coding downstream 902231 12299517 ~ 12300453 (+)
LOC118944185 NA coding downstream 1074932 12430935 ~ 12555437 (+)
LOC110513835 nipal2 coding downstream 1165029 12562337 ~ 12616197 (+)
G113282 NA non-coding upstream 1359 11390836 ~ 11391583 (+)
G113281 NA non-coding upstream 8556 11384098 ~ 11384386 (+)
G113279 NA non-coding upstream 13503 11379135 ~ 11379439 (+)
G113278 NA non-coding upstream 16782 11375950 ~ 11376160 (+)
G113286 NA non-coding downstream 18200 11415508 ~ 11415786 (+)
G113292 NA non-coding downstream 24855 11422163 ~ 11422955 (+)
G113305 LOC106595260 non-coding downstream 50294 11447602 ~ 11448392 (+)
G113288 NA non-coding downstream 55488 11452796 ~ 11455854 (+)
G112697 NA other upstream 566879 10811518 ~ 10826063 (+)
LOC118937659 NA other upstream 1616491 9773574 ~ 9776807 (+)
LOC110506952 LOC106606100 other upstream 1669071 9701990 ~ 9742723 (+)
G113285 NA other downstream 17623 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 80668 11477976 ~ 11482741 (+)
G113396 NA other downstream 311295 11708603 ~ 11709777 (+)
G114243 NA other downstream 1323100 12720408 ~ 12720693 (+)
G114244 NA other downstream 1323422 12720730 ~ 12721315 (+)

Expression


Co-expression Network