Item | Value |
---|---|
gene id | LOC110510416 |
gene name | LOC106596421 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048566.1 |
NCBI id | CM023220.2 |
chromosome length | 103806877 |
location | 11416206 ~ 11459325 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036938029.1 | False | 3687 | mRNA | 0.54 | 21 | 11416206 | 11451916 |
XM_036938016.1 | False | 4068 | mRNA | 0.56 | 22 | 11416206 | 11458431 |
XM_036938019.1 | False | 4065 | mRNA | 0.56 | 22 | 11416206 | 11458431 |
XM_036938025.1 | False | 4059 | mRNA | 0.56 | 22 | 11416206 | 11458431 |
TU129494 | False | 1769 | lncRNA | 0.39 | 3 | 11451371 | 11459325 |
TU129495 | False | 1639 | lncRNA | 0.42 | 5 | 11451371 | 11459325 |
TU129496 | False | 1695 | lncRNA | 0.54 | 4 | 11451371 | 11459325 |
TU129497 | False | 1441 | lncRNA | 0.36 | 5 | 11451371 | 11459325 |
TU129541 | False | 284 | lncRNA | 0.35 | 2 | 11451590 | 11451990 |
TU129542 | True | 278 | lncRNA | 0.35 | 2 | 11451590 | 11451990 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
fbxo43 | fbxo43 | coding | upstream | 2493 | 11402943 ~ 11413713 (+) |
echdc1 | echdc1 | coding | upstream | 18898 | 11392942 ~ 11397308 (+) |
soga3a | LOC106593623 | coding | upstream | 43206 | 11328026 ~ 11373000 (+) |
LOC110520740 | LOC106592347 | coding | upstream | 91399 | 11307174 ~ 11324807 (+) |
LOC118944054 | NA | coding | upstream | 138649 | 11274681 ~ 11277557 (+) |
LOC110511179 | NA | coding | downstream | 841108 | 12299517 ~ 12300453 (+) |
LOC118944185 | NA | coding | downstream | 1013809 | 12430935 ~ 12555437 (+) |
LOC110513835 | nipal2 | coding | downstream | 1103906 | 12562337 ~ 12616197 (+) |
LOC110510520 | rida | coding | downstream | 1215654 | 12674085 ~ 12680150 (+) |
spag1b | LOC106592835 | coding | downstream | 1258143 | 12716574 ~ 12776832 (+) |
G113286 | NA | non-coding | upstream | 420 | 11415508 ~ 11415786 (+) |
G113282 | NA | non-coding | upstream | 24623 | 11390836 ~ 11391583 (+) |
G113281 | NA | non-coding | upstream | 31820 | 11384098 ~ 11384386 (+) |
G113279 | NA | non-coding | upstream | 36767 | 11379135 ~ 11379439 (+) |
G113278 | NA | non-coding | upstream | 40046 | 11375950 ~ 11376160 (+) |
G113311 | LOC106593635 | non-coding | downstream | 11357 | 11469788 ~ 11524208 (+) |
G113323 | NA | non-coding | downstream | 39281 | 11497712 ~ 11498170 (+) |
G113328 | NA | non-coding | downstream | 49008 | 11507439 ~ 11511358 (+) |
G113334 | NA | non-coding | downstream | 67295 | 11525726 ~ 11526083 (+) |
G113339 | LOC106593525 | non-coding | downstream | 86025 | 11544456 ~ 11545199 (+) |
G113285 | NA | other | upstream | 1028 | 11414931 ~ 11415178 (+) |
elovl4a | LOC106606161 | other | upstream | 143206 | 11260912 ~ 11275480 (+) |
fbxo32 | fbxo32 | other | upstream | 173137 | 11227497 ~ 11243074 (+) |
G112697 | NA | other | upstream | 590143 | 10811518 ~ 10826063 (+) |
LOC118937659 | NA | other | upstream | 1639755 | 9773574 ~ 9776807 (+) |
G113313 | LOC102781083 | other | downstream | 19545 | 11477976 ~ 11482741 (+) |
G113396 | NA | other | downstream | 250172 | 11708603 ~ 11709777 (+) |
G114243 | NA | other | downstream | 1261977 | 12720408 ~ 12720693 (+) |
G114244 | NA | other | downstream | 1262299 | 12720730 ~ 12721315 (+) |
G114263 | NA | other | downstream | 1303801 | 12762232 ~ 12762827 (+) |
G113305 | LOC106595260 | non-coding | upstream | 2979 | 11447602 ~ 11448392 (+) |
G113292 | NA | non-coding | upstream | 28416 | 11422163 ~ 11422955 (+) |