XLOC_002053 (atp6v1b2)


Basic Information

Item Value
gene id XLOC_002053
gene name atp6v1b2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19554604 ~ 19566474 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003977
ACGTAGCTCCTAGTGCGCATGTGCATTTGTGCTTTCACACTTTAGCTTGCAGTAGTGATTTTTGTGTAGAGTAGTCATCATGAAGGCTCTTAGGGGAATGGTGAGCGGAGCCGTGAGCGAAATATCATCTTCTCTTACTGGGACTAAACAGGTCGCCGTTCGGGAAAATGTCCTTGCCGTGACTCGTGACTACATTTCTCAGCCGAGATTAACATATAAAACTGTGGCTGGTGTTAATGGACCCCTGGTGATTTTGGATCAAGTGAAGTTTCCCAGGTATGCTGAGATCGTCCATCTCACTCTCCCTGATGGCACTAAGAGGAGTGGACAAGTGCTGGAGGTCACAGGCTCCAAAGCTGTGGTTCAGgTGTTTGAGGGAACATCTGGTATTGATGCCAAAAAAACGACCTGCGAATTTACAGGGGACATTTTGCGCACACCTGTGTCTGAGGACATGCTGGGTCGTGTTTTCAATGGATCAGGAAAGCCAATTGATCGAGGACCTGCGGTGCTGGCAGAGGACTACTTAGACATTATGGGACAGCCAATTAATCCTCAATGTCGTATTTATCCTGAGGAAATGATCCAAACTGGCATCTCTGCCATTGATGGCATGAACAGTATTGCCAGAGGCCAAAAAATTCCCATTTTCTCTGCAGCTGGTCTACCACACAATGAGATTGCTGCACAGATCTGTCGCCAGGCAGGTTTGGTAAAGAAGTCTAAAGATGTGATGGATTACAGTGAGGATAACTTTGCCATTGTGTTTGCTGCCATGGGGGTCAACATGGAGACtgcaagattttttaaatcagacTTTGAAGAGAACGGGTCCATGGACAATGTGTGCCTTTTTTTAAATCTGGCCAATGATCCCACGATTGAACGTATCATCACCCCTCGCCTTGCACTTACCTCAGCTGAGTTCCTGGCTTACCAGTGTGAGAAACACGTGCTGGTCATATTGACTGACATGAGCTCTTATGCCGAGGCCTTACGTGAGGTGTCTGCTGCTAGAGAAGAGGTTCCCGGTCGACGTGGATTTCCAGGTTACATGTACACAGATCTGGCTACAATATATGAGAGGGCTGGACGTGTGGAAGGACGCAATGGATCCATCACTCAAATCCCAATCCTCACTATGCCCAATGATGatattACTCATCCTATTCCTGATTTAACCGGCTATATCACTGAAGGTCAAATTTATGTGGATAGACAGCTTCATAACAGACAGATTTATCCTCCCATCAATGTACTACCCTCTTTGTCTCGATTGATGAAATCAGCCATTGGTGAGGGAATGACACGTAAAGACCACTCGGATGTCTCTAATCAGCTTTATGCTTGCTATGCTATTGGGAAAGATGTGCAGGCAATGAAGGCTGTGGTTGGAGAAGAAGCACTGACATCAGATGACTTGTTGTACTTGGAGTTCTTACAGAAATTTGAGAGGAACTTTATTTCCCAGGGTGCATATGAGAACCGGACTGTGTTTGAGACGTTGGACATTGGCTGGCAGCTCCTGCGAATCTTCCCCAAGGAGATGCTGAAGAGGATTCCTCAGAGCACTCTGGCTGAGTTTTACCCCCGAGACTCCAAACATTAGTCTTACTTCCTTGTTCATTCACTTTGTCTCTCAATCAACCGTGAATCTGTCATCTACACTTCTAGATGTTTTTCAGTCTCTGAAATCAAGTACACACAGCCTAGATTGGTGGAATACAAAGCTGTTTTTCATTGCTGCTCTGAGTATTTGCTTATTATGTAAGTGTTGCTAAATAGTGAAGCCAATGTAGTATGAATAGTGTCGCTACActtctgtgtggatgtttttttttgtgtgtggctcAGTGTGACAACAGTGTGGTAAAGGCCAGACAGAGTTTACACTTTAGAGCAAGTGGCTACTAGTGTGTATTACAAAACAATCTGTTTCTTTATTTCAGAAGTGCTAAGATTATAGATTAATGTATTGTATGGATTTGTACTTATTACAATCTTTTCACtgtatatttaaaagagaaaatgttCTATAAATGATGAAGAGTAGCCAGATGTTCATTAAAATGCATAAACTGCAGTGGCCATATCAATTTAGGAGCAGTTGTTTACTATAGCAAGAGGAAAGCCAAACACTGagcaatttatttttgttcattttttttctcacatTATTTTATGAGTTGTATCGAAAAGTGTGATGTATGGTTGtggcaatatatttatttattatttattttggtgcaaTAAATGTATGTACTGTGTAAAGTGTGCTATATCATGTTCATAAAGAAGTGATTGACCTCTTAATGCatgaaaactataaaaaatatgtatgtgaCCACTTGCTTTGTGAAATAAACATTGATGTGGTGTAATTT

Function

symbol description
atp6v1b2 Predicted to enable ATP binding activity. Predicted to act upstream of or within ATP metabolic process and proton transmembrane transport. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Human ortholog(s) of this gene implicated in autosomal dominant congenital deafness with onychodystrophy. Orthologous to human ATP6V1B2 (ATPase H+ transporting V1 subunit B2).

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006811 ion transport biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030711-4 Predicted to enable ATP binding activity. Predicted to act upstream of or within ATP metabolic process and proton transmembrane transport. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Human ortholog(s) of this gene implicated in autosomal dominant congenital deafness with onychodystrophy. Orthologous to human ATP6V1B2 (ATPase H+ transporting V1 subunit B2).

Ensembl:

ensembl_id ENSDARG00000043465

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003977 True 2384 mRNA 0.42 14 19554604 19566474

Neighbor

gene id symbol gene type direction distance location
XLOC_002052 vsig8a coding upstream 3486 19525839 ~ 19551118 (+)
XLOC_002051 lrrtm4l1 coding upstream 160113 19310688 ~ 19394491 (+)
XLOC_002050 igsf9a coding upstream 460796 19026988 ~ 19093808 (+)
XLOC_002049 tmem230a coding upstream 533028 19017146 ~ 19021576 (+)
XLOC_002048 dpysl2b coding upstream 562133 18952271 ~ 18992471 (+)
XLOC_002054 CABZ01059627.1 coding downstream 2578 19569052 ~ 19570346 (+)
XLOC_002055 CABZ01059627.2 coding downstream 7317 19573791 ~ 19575962 (+)
XLOC_002056 CABZ01059627.3 coding downstream 16815 19583289 ~ 19589733 (+)
XLOC_002057 zgc:173837 coding downstream 28535 19595009 ~ 19598009 (+)
XLOC_002058 CABZ01059623.1 coding downstream 35860 19602334 ~ 19725594 (+)
XLOC_002045 AL928714.1 non-coding upstream 752169 18798927 ~ 18802435 (+)
XLOC_002043 NA non-coding upstream 1272169 18240550 ~ 18282435 (+)
XLOC_002042 NA non-coding upstream 1483098 18007123 ~ 18071506 (+)
XLOC_002040 BX927277.1 non-coding upstream 1664401 17890089 ~ 17890203 (+)
XLOC_002035 dre-mir-218b non-coding upstream 1859264 17695265 ~ 17695340 (+)
XLOC_002063 NA non-coding downstream 810614 20377088 ~ 20381313 (+)
XLOC_002065 NA non-coding downstream 881993 20448467 ~ 20452630 (+)
XLOC_002066 NA non-coding downstream 935302 20501776 ~ 20502178 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G423009 NA unknown CI01000304 null 8234441 ~ 8234534 (+)
bowfin (Amia calva) AMCG00020972 atp6v1b2,LOC108277294,LOC106563054,LOC103034689,LOC105890663 coding CM030127.1 CM030127.1 39012711 ~ 39027527 (+)