LOC118944185


Basic Information

Item Value
gene id LOC118944185
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12430935 ~ 12555437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039499.1
atcgcttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcccctaTCTGGGGACcatatattaaattgatttttgGAATAGGGAGATGGAataggggcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggAACGGTGCACCCCCT
>TU130820
tggggtatgtctctatcagttttgcacatcgagagcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcccctaTCTGGGGACcatatattaaattgatttttgGAATAGGGAGATGGAataggggcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggatgcagtaataaccaacaagtaatc

Function

NR:

description
LOC569167 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039499.1 False 191 mRNA 0.47 1 12472240 12472430
TU130820 True 227 lncRNA 0.46 3 12430935 12555437

Neighbor

gene id symbol gene type direction distance location
LOC110511179 NA coding upstream 172283 12299517 ~ 12300453 (+)
LOC110510416 LOC106596421 coding upstream 1013809 11416206 ~ 11459325 (+)
fbxo43 fbxo43 coding upstream 1058527 11402943 ~ 11413713 (+)
echdc1 echdc1 coding upstream 1074932 11392942 ~ 11397308 (+)
soga3a LOC106593623 coding upstream 1099240 11328026 ~ 11373000 (+)
LOC110513835 nipal2 coding downstream 89907 12562337 ~ 12616197 (+)
LOC110510520 rida coding downstream 201655 12674085 ~ 12680150 (+)
spag1b LOC106592835 coding downstream 244144 12716574 ~ 12776832 (+)
LOC110525149 LOC106589684 coding downstream 441201 12913631 ~ 12916798 (+)
LOC118937726 NA coding downstream 454391 12926821 ~ 12927702 (+)
G114144 NA non-coding upstream 57315 12412044 ~ 12414925 (+)
G114140 NA non-coding upstream 63320 12407008 ~ 12408920 (+)
G114135 NA non-coding upstream 87174 12382810 ~ 12385066 (+)
G114125 NA non-coding upstream 114048 12357865 ~ 12358192 (+)
G114105 NA non-coding upstream 134109 12337877 ~ 12338131 (+)
G114161 NA non-coding downstream 1942 12474372 ~ 12475714 (+)
G114167 NA non-coding downstream 58422 12530852 ~ 12535346 (+)
G114191 NA non-coding downstream 130456 12602886 ~ 12603535 (+)
G114192 NA non-coding downstream 146175 12618605 ~ 12619236 (+)
G113396 NA other upstream 762463 11708603 ~ 11709777 (+)
G113313 LOC102781083 other upstream 989499 11477976 ~ 11482741 (+)
G113285 NA other upstream 1057062 11414931 ~ 11415178 (+)
elovl4a LOC106606161 other upstream 1199240 11260912 ~ 11275480 (+)
fbxo32 fbxo32 other upstream 1229171 11227497 ~ 11243074 (+)
G114243 NA other downstream 247978 12720408 ~ 12720693 (+)
G114244 NA other downstream 248300 12720730 ~ 12721315 (+)
G114263 NA other downstream 289802 12762232 ~ 12762827 (+)
G114323 NA other downstream 476930 12949360 ~ 12964930 (+)
LOC110520769 LOC106593286 other downstream 1149547 13604304 ~ 13623972 (+)
G114193 NA non-coding downstream 67871 12623308 ~ 12624145 (+)
G114194 NA non-coding downstream 68745 12624182 ~ 12624405 (+)

Expression


Co-expression Network