Gene
RNA
| Item | Value |
|---|---|
| gene id | spag1b |
| gene name | LOC106592835 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 12716574 ~ 12776832 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| sperm-associated antigen 1A-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036938201.1 | False | 4577 | mRNA | 0.51 | 19 | 12716574 | 12776832 |
| XR_005035119.1 | False | 4540 | mRNA | 0.51 | 20 | 12716574 | 12776832 |
| XR_005035120.1 | False | 4479 | mRNA | 0.51 | 20 | 12716574 | 12776832 |
| XR_005035122.1 | False | 4546 | mRNA | 0.51 | 20 | 12716574 | 12776832 |
| XR_005035124.1 | False | 4540 | mRNA | 0.51 | 20 | 12716574 | 12776832 |
| XR_005035125.1 | False | 4540 | mRNA | 0.51 | 20 | 12716574 | 12776832 |
| XR_005035126.1 | False | 4503 | mRNA | 0.51 | 20 | 12716574 | 12776832 |
| TU131039 | True | 457 | lncRNA | 0.46 | 1 | 12727123 | 12727579 |
12,710,000
12,720,000
12,730,000
12,740,000
12,750,000
12,760,000
12,770,000
12,780,000
12,790,000
12,800,000
12,810,000
12,820,000
12,830,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110510520 | rida | coding | upstream | 36424 | 12674085 ~ 12680150 (+) |
| LOC110513835 | nipal2 | coding | upstream | 100377 | 12562337 ~ 12616197 (+) |
| LOC118944185 | NA | coding | upstream | 244144 | 12430935 ~ 12555437 (+) |
| LOC110511179 | NA | coding | upstream | 416617 | 12299517 ~ 12300453 (+) |
| LOC110510416 | LOC106596421 | coding | upstream | 1258143 | 11416206 ~ 11459325 (+) |
| LOC110525149 | LOC106589684 | coding | downstream | 136799 | 12913631 ~ 12916798 (+) |
| LOC118937726 | NA | coding | downstream | 149989 | 12926821 ~ 12927702 (+) |
| LOC110507515 | LOC106575761 | coding | downstream | 270047 | 13046879 ~ 13061306 (+) |
| LOC118936508 | ano10 | coding | downstream | 416313 | 13193145 ~ 13241855 (+) |
| LOC110507612 | NA | coding | downstream | 548105 | 13324937 ~ 13330676 (+) |
| G114234 | NA | non-coding | upstream | 385 | 12715933 ~ 12716189 (+) |
| G114228 | NA | non-coding | upstream | 20141 | 12696180 ~ 12696433 (+) |
| G114221 | NA | non-coding | upstream | 30707 | 12682744 ~ 12685867 (+) |
| G114220 | NA | non-coding | upstream | 33888 | 12681433 ~ 12682686 (+) |
| G114217 | NA | non-coding | upstream | 42656 | 12673659 ~ 12673918 (+) |
| G114271 | NA | non-coding | downstream | 3479 | 12780311 ~ 12780669 (+) |
| G114272 | NA | non-coding | downstream | 33090 | 12809922 ~ 12810124 (+) |
| G114235 | NA | non-coding | downstream | 36848 | 12813680 ~ 12817484 (+) |
| G114238 | NA | non-coding | downstream | 44625 | 12821457 ~ 12822074 (+) |
| G114237 | LOC106529126 | non-coding | downstream | 46148 | 12822980 ~ 12823190 (+) |
| G113396 | NA | other | upstream | 1006797 | 11708603 ~ 11709777 (+) |
| G113313 | LOC102781083 | other | upstream | 1233833 | 11477976 ~ 11482741 (+) |
| G113285 | NA | other | upstream | 1301396 | 11414931 ~ 11415178 (+) |
| elovl4a | LOC106606161 | other | upstream | 1443574 | 11260912 ~ 11275480 (+) |
| fbxo32 | fbxo32 | other | upstream | 1473505 | 11227497 ~ 11243074 (+) |
| G114323 | NA | other | downstream | 172528 | 12949360 ~ 12964930 (+) |
| LOC110520769 | LOC106593286 | other | downstream | 845145 | 13604304 ~ 13623972 (+) |
| LOC110520780 | LOC106574729 | other | downstream | 924778 | 13663839 ~ 13756558 (+) |
| LOC110535330 | LOC106574784 | other | downstream | 1184429 | 13961020 ~ 13976561 (+) |
| G115190 | NA | other | downstream | 1365050 | 14141882 ~ 14144267 (+) |
| G114248 | NA | non-coding | downstream | 3091 | 12730670 ~ 12731081 (+) |
| G114259 | NA | non-coding | downstream | 23269 | 12750848 ~ 12751314 (+) |
| G114268 | NA | non-coding | downstream | 41766 | 12769345 ~ 12769763 (+) |
| G114270 | NA | non-coding | downstream | 44604 | 12772183 ~ 12772913 (+) |
| G114244 | NA | other | upstream | 5808 | 12720730 ~ 12721315 (+) |
| G114243 | NA | other | upstream | 6430 | 12720408 ~ 12720693 (+) |
| G114263 | NA | other | downstream | 34653 | 12762232 ~ 12762827 (+) |
